vOTU vOTU-097056

vOTU: vOTU-097056

Overview

Genome (FASTA) Annotation Track (GFF) Proteins (FASTA) Protein Annotation (TSV)

Cluster properties
vOTU ID	vOTU-097056
Number of genomes	1
Taxonomy (ICTV)	Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes
Taxonomy (UHGV)	vFAM-00006 → vSUBFAM-00134 → vGENUS-00111 → vOTU-097056
Host lineage	Bacteria → Firmicutes_A → Clostridia → Oscillospirales → Acutalibacteraceae → Ruminococcus_E → Ruminococcus_E bromii_B
Host range breadth	Species
Lifestyle	temperate (evidence: integrase)

Representative genome
Genome ID	UHGV-0113899
Biosample ID	SAMEA4378239
Genome length (bp)	30,756 bps
CheckV completeness	87.42% (Medium-quality)
CDS count	38
CDS density	91.77%
tRNA count	0
Integrase	Yes
Viral confidence	Confident

Host assignment details
Assignment method	CRISPR
CRISPR-predicted host lineage	Bacteria → Firmicutes_A → Clostridia → Oscillospirales → Acutalibacteraceae → Ruminococcus_E → Ruminococcus_E bromii_B	Total connections	1801	Host agreement	90.78
PHIST-predicted host lineage	Bacteria → Firmicutes_A → Clostridia → Oscillospirales → Acutalibacteraceae → Ruminococcus_E → Ruminococcus_E bromii_B	Total connections	11	Host agreement	100

Representative genome content

Select to view: Genome Viewer Functional Annotation

Genome view (completeness: 87.42)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
KOfam	UHGV-0113899_1	K14059	100.1	3.5e-29	int; integrase	N/A
PHROG	UHGV-0113899_1	phrog_1	120.3	2.3e-35	integrase	integration and excision
UniRef90	UHGV-0113899_1	UniRef90_A0A1G5CL52	786.0	0	Phage integrase family protein	N/A
eggNOG-mapper	UHGV-0113899_1	693746.OBV_41260	186.0	0	Belongs to the 'phage' integrase family	N/A
Pfam	UHGV-0113899_1	PF00589	N/A	N/A	Phage integrase family	Phage_integrase
COG	UHGV-0113899_1	COG4974	N/A	N/A	Site-specific recombinase XerD	N/A
structural_annotation	UHGV-0113899_1	PF00589,MF_01808,NF007246,COG4974	N/A	N/A	N/A	N/A
UniRef90	UHGV-0113899_2	UniRef90_UPI000E52DA24	533.0	0	zinc ribbon domain-containing protein	N/A
Pfam	UHGV-0113899_2	PF12773	N/A	N/A	Double zinc ribbon	DZR
structural_annotation	UHGV-0113899_2	PF18933,PF02883,MF_02248,NF008627,COG5435,COG2847	N/A	N/A	N/A	N/A
PHROG	UHGV-0113899_3	phrog_1914	143.6	1.19951e-42	N/A	unknown function
UniRef90	UHGV-0113899_3	UniRef90_UPI000E543E50	348.0	0	ImmA/IrrE family metallo-endopeptidase	N/A
eggNOG-mapper	UHGV-0113899_3	1160721.RBI_I01604	168.0	0	N/A	N/A
Pfam	UHGV-0113899_3	PF06114	N/A	N/A	IrrE N-terminal-like domain	Peptidase_M78
COG	UHGV-0113899_3	COG2856	N/A	N/A	Zn-dependent peptidase ImmA, M78 family	N/A
structural_annotation	UHGV-0113899_3	PF06114,COG2856	N/A	N/A	N/A	N/A
UniRef90	UHGV-0113899_4	UniRef90_A0A373XLN2	158.0	0	XRE family transcriptional regulator	N/A
eggNOG-mapper	UHGV-0113899_4	1408823.AXUS01000025_gene2653	58.9	0.00000000852	N/A	N/A
structural_annotation	UHGV-0113899_4	PF05339,NF007257,COG3655	N/A	N/A	N/A	N/A
UniRef90	UHGV-0113899_5	UniRef90_A0A374DVN3	161.0	0	DNA-binding protein	N/A
eggNOG-mapper	UHGV-0113899_5	1219626.HMPREF1639_07045	47.8	0.00000322	N/A	N/A
PHROG	UHGV-0113899_10	phrog_6058	42.1	0.000000000011	N/A	unknown function
structural_annotation	UHGV-0113899_10	NF033787	N/A	N/A	N/A	N/A
KOfam	UHGV-0113899_12	K03497	157.5	0	parB, spo0J; ParB family transcriptional regulator, chromosome partitioning protein	N/A
PHROG	UHGV-0113899_12	phrog_6218	244.1	0	ParB-like partition protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0113899_12	UniRef90_A0A3D3D7T1	726.0	0	ParB domain-containing protein	N/A
eggNOG-mapper	UHGV-0113899_12	394503.Ccel_3306	255.0	0	Belongs to the ParB family	N/A
Pfam	UHGV-0113899_12	PF02195	N/A	N/A	ParB/Sulfiredoxin domain	ParBc
NCBIFam	UHGV-0113899_12	TIGR00180.1	N/A	N/A	ParB/RepB/Spo0J family partition protein	N/A
COG	UHGV-0113899_12	COG0710	N/A	N/A	3-dehydroquinate dehydratase	N/A
structural_annotation	UHGV-0113899_12	PF18579,MF_02015,TIGR00180,COG1475	N/A	N/A	N/A	N/A
KOfam	UHGV-0113899_13	K03427	40.7	0.000000000027	hsdM; type I restriction enzyme M protein [EC:2.1.1.72]	N/A
PHROG	UHGV-0113899_13	phrog_5696	217.3	0	N/A	unknown function
UniRef90	UHGV-0113899_13	UniRef90_UPI001B3C9C54	253.0	0	N-6 DNA methylase	N/A
eggNOG-mapper	UHGV-0113899_13	397291.C804_06560	150.0	7.62026e-42	N-6 DNA Methylase	N/A
Pfam	UHGV-0113899_13	PF02384	N/A	N/A	N-6 DNA Methylase	N6_Mtase
COG	UHGV-0113899_13	COG0286	N/A	N/A	Type I restriction-modification system, DNA methylase subunit	N/A
structural_annotation	UHGV-0113899_13	COG0286	N/A	N/A	N/A	N/A
KOfam	UHGV-0113899_14	K04763	170.9	0	xerD; integrase/recombinase XerD	N/A
PHROG	UHGV-0113899_14	phrog_1	110.6	2.2e-32	integrase	integration and excision
UniRef90	UHGV-0113899_14	UniRef90_A0A3D0XCX4	360.0	0	Integrase	N/A
eggNOG-mapper	UHGV-0113899_14	484018.BACPLE_03294	194.0	0	Belongs to the 'phage' integrase family	N/A
Pfam	UHGV-0113899_14	PF13495	N/A	N/A	Phage integrase, N-terminal SAM-like domain	Phage_int_SAM_4
Pfam	UHGV-0113899_14	PF00589	N/A	N/A	Phage integrase family	Phage_integrase
COG	UHGV-0113899_14	COG0582	N/A	N/A	Integrase/recombinase, includes phage integrase	N/A
structural_annotation	UHGV-0113899_14	PF00589,PF13495,MF_02055,NF040815,COG4974	N/A	N/A	N/A	N/A
PHROG	UHGV-0113899_15	phrog_323	82.9	1.4e-27	endonuclease	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0113899_15	UniRef90_UPI001C01CFF8	308.0	0	SANT/Myb domain-containing protein	N/A
eggNOG-mapper	UHGV-0113899_15	394503.Ccel_3305	337.0	0	SANT SWI3, ADA2, N-CoR and TFIIIB'' DNA-binding domains	N/A
Pfam	UHGV-0113899_15	PF00249	N/A	N/A	Myb-like DNA-binding domain	Myb_DNA-binding
dbAPIS	UHGV-0113899_15	APIS006	N/A	N/A	Trigger programmed cell death (PCD) by P4 prophage.	N/A
structural_annotation	UHGV-0113899_15	PF11112,NF040595	N/A	N/A	N/A	N/A
KOfam	UHGV-0113899_18	K18830	50.9	0.000000000000042	pezA; HTH-type transcriptional regulator / antitoxin PezA	N/A
PHROG	UHGV-0113899_18	phrog_8	63.0	7.6e-18	transcriptional regulator	transcription regulation
UniRef90	UHGV-0113899_18	UniRef90_A0A374N9T4	122.0	2.33e-35	XRE family transcriptional regulator	N/A
eggNOG-mapper	UHGV-0113899_18	717605.Theco_0106	75.1	2.07e-16	Cro/C1-type HTH DNA-binding domain	N/A
Pfam	UHGV-0113899_18	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
COG	UHGV-0113899_18	COG1476	N/A	N/A	DNA-binding transcriptional regulator, XRE-family HTH domain	N/A
structural_annotation	UHGV-0113899_18	PF01381,NF041951,COG1396	N/A	N/A	N/A	N/A
PHROG	UHGV-0113899_21	phrog_3584	147.3	1.09301e-43	replication initiation protein	DNA, RNA and nucleotide metabolism
eggNOG-mapper	UHGV-0113899_21	1235800.C819_00515	70.1	0.0000000000184	N/A	N/A
structural_annotation	UHGV-0113899_21	PF21578,NF041486	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0113899_22	394503.Ccel_3053	53.5	0.000000349	N/A	N/A
structural_annotation	UHGV-0113899_22	TIGR01636	N/A	N/A	N/A	N/A
PHROG	UHGV-0113899_23	phrog_119	66.8	3.4e-19	HNH endonuclease	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0113899_23	UniRef90_A0A412ULY9	207.0	0	HNH endonuclease	N/A
eggNOG-mapper	UHGV-0113899_23	1158607.UAU_01026	99.4	1.18e-25	HNH endonuclease	N/A
Pfam	UHGV-0113899_23	PF01844	N/A	N/A	HNH endonuclease	HNH
COG	UHGV-0113899_23	COG1403	N/A	N/A	5-methylcytosine-specific restriction endonuclease McrA	N/A
PHROG	UHGV-0113899_24	phrog_5110	83.0	2.5e-24	terminase small subunit	head and packaging
UniRef90	UHGV-0113899_24	UniRef90_A0A1M5U1D5	113.0	1.2e-30	Phage terminase, small subunit	N/A
eggNOG-mapper	UHGV-0113899_24	1211817.CCAT010000053_gene2128	100.0	3.14e-26	N/A	N/A
Pfam	UHGV-0113899_24	PF05119	N/A	N/A	Phage terminase, small subunit	Terminase_4
structural_annotation	UHGV-0113899_24	PF05119,TIGR01558,COG3747	N/A	N/A	N/A	N/A
PHROG	UHGV-0113899_25	phrog_9	299.6	0	terminase large subunit	head and packaging
UniRef90	UHGV-0113899_25	UniRef90_A0A412UM03	1021.0	0	Terminase large subunit	N/A
eggNOG-mapper	UHGV-0113899_25	86416.Clopa_0337	637.0	0	Phage Terminase	N/A
Pfam	UHGV-0113899_25	PF03354	N/A	N/A	Terminase large subunit, ATPase domain	TerL_ATPase
Pfam	UHGV-0113899_25	PF20441	N/A	N/A	Terminase large subunit, endonuclease domain	TerL_nuclease
COG	UHGV-0113899_25	COG4626	N/A	N/A	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	N/A
structural_annotation	UHGV-0113899_25	PF20441,PF03354,MF_04146,TIGR01547,COG4626	N/A	N/A	N/A	N/A
PHROG	UHGV-0113899_26	phrog_12	94.3	1e-27	portal protein	head and packaging
UniRef90	UHGV-0113899_26	UniRef90_A0A412ULV9	743.0	0	Phage portal protein	N/A
eggNOG-mapper	UHGV-0113899_26	1415774.U728_1254	257.0	0	Phage portal protein	N/A
Pfam	UHGV-0113899_26	PF04860	N/A	N/A	Phage portal protein	Phage_portal
NCBIFam	UHGV-0113899_26	TIGR01537.1	N/A	N/A	phage portal protein	N/A
COG	UHGV-0113899_26	COG4695	N/A	N/A	Phage portal protein BeeE	N/A
structural_annotation	UHGV-0113899_26	PF04860,MF_04135,TIGR01537,COG4695	N/A	N/A	N/A	N/A
KOfam	UHGV-0113899_27	K01358	141.7	7.40026e-42	clpP, CLPP; ATP-dependent Clp protease, protease subunit [EC:3.4.21.92]	N/A
PHROG	UHGV-0113899_27	phrog_94	206.8	0	head maturation protease	head and packaging
UniRef90	UHGV-0113899_27	UniRef90_A0A412ULU1	442.0	0	ATP-dependent Clp protease proteolytic subunit	N/A
eggNOG-mapper	UHGV-0113899_27	86416.Clopa_0340	172.0	0	Belongs to the peptidase S14 family	N/A
Pfam	UHGV-0113899_27	PF00574	N/A	N/A	Clp protease	CLP_protease
COG	UHGV-0113899_27	COG0740	N/A	N/A	ATP-dependent protease ClpP, protease subunit	N/A
structural_annotation	UHGV-0113899_27	PF00574,MF_00444,NF011090,COG0740	N/A	N/A	N/A	N/A
PHROG	UHGV-0113899_28	phrog_10	120.9	1.3e-35	major head protein	head and packaging
UniRef90	UHGV-0113899_28	UniRef90_A0A412ULW9	695.0	0	Phage major capsid protein	N/A
eggNOG-mapper	UHGV-0113899_28	1211817.CCAT010000053_gene2132	323.0	0	Phage capsid family	N/A
Pfam	UHGV-0113899_28	PF05065	N/A	N/A	Phage capsid family	Phage_capsid
NCBIFam	UHGV-0113899_28	TIGR01554.2	N/A	N/A	phage major capsid protein	N/A
COG	UHGV-0113899_28	COG4653	N/A	N/A	Predicted phage phi-C31 gp36 major capsid-like protein	N/A
structural_annotation	UHGV-0113899_28	PF05065,MF_04119,TIGR01554,COG4653	N/A	N/A	N/A	N/A
PHROG	UHGV-0113899_29	phrog_749	56.0	6.5e-16	N/A	unknown function
UniRef90	UHGV-0113899_29	UniRef90_A0A1G5CMX8	107.0	2.14e-28	Phage gp6-like head-tail connector protein	N/A
eggNOG-mapper	UHGV-0113899_29	1211817.CCAT010000053_gene2133	59.7	0.000000000292	N/A	N/A
PHROG	UHGV-0113899_30	phrog_19734	71.7	9.4e-21	N/A	unknown function
UniRef90	UHGV-0113899_30	UniRef90_UPI00057FE645	57.8	0.000000018	phage head closure protein	N/A
eggNOG-mapper	UHGV-0113899_30	86416.Clopa_0343	59.7	0.000000000649	N/A	N/A
NCBIFam	UHGV-0113899_30	TIGR01563.1	N/A	N/A	phage head closure protein	N/A
structural_annotation	UHGV-0113899_30	PF05521,TIGR01563,COG5614	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0113899_31	272623.L59277	53.5	0.000000108	N/A	N/A
structural_annotation	UHGV-0113899_31	PF05657,MF_00281,COG0016	N/A	N/A	N/A	N/A
UniRef90	UHGV-0113899_32	UniRef90_UPI000E5564A4	275.0	0	HK97 gp10 family phage protein	N/A
Pfam	UHGV-0113899_32	PF04883	N/A	N/A	Bacteriophage HK97-gp10, putative tail-component	HK97-gp10_like
structural_annotation	UHGV-0113899_32	TIGR01725	N/A	N/A	N/A	N/A
PHROG	UHGV-0113899_33	phrog_88	69.7	4.4e-20	major tail protein	tail
UniRef90	UHGV-0113899_33	UniRef90_A0A1G5CNS8	150.0	2.90069e-42	Phage major tail protein, phi13 family	N/A
eggNOG-mapper	UHGV-0113899_33	397290.C810_01261	61.6	0.00000000614	phage major tail protein, phi13 family	N/A
NCBIFam	UHGV-0113899_33	TIGR01603.1	N/A	N/A	major tail protein	N/A
structural_annotation	UHGV-0113899_33	PF06488,TIGR01603,COG3498	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0113899_34	PF11836	N/A	N/A	N/A	N/A
KOfam	UHGV-0113899_35	K20283	69.9	5.1e-21	GOLGA4; golgin subfamily A member 4	N/A
PHROG	UHGV-0113899_35	phrog_1272	234.9	0	tail length tape measure protein	tail
UniRef90	UHGV-0113899_35	UniRef90_A0A412ULX0	1726.0	0	PhageMin_Tail domain-containing protein	N/A
eggNOG-mapper	UHGV-0113899_35	588581.Cpap_1264	215.0	0	Tail tape measure protein, TP901 family	N/A
Pfam	UHGV-0113899_35	PF10145	N/A	N/A	Phage-related minor tail protein	PhageMin_Tail
COG	UHGV-0113899_35	COG5280	N/A	N/A	Phage-related minor tail protein	N/A
structural_annotation	UHGV-0113899_35	PF10145,TIGR01760,COG5280	N/A	N/A	N/A	N/A
PHROG	UHGV-0113899_36	phrog_33	74.0	3.7e-21	distal tail protein Dit	tail
UniRef90	UHGV-0113899_36	UniRef90_A0A1G5CPA2	135.0	4.31e-35	Phage-related protein	N/A
eggNOG-mapper	UHGV-0113899_36	1160721.RBI_I01575	87.8	6.9e-18	Phage tail protein	N/A
COG	UHGV-0113899_36	COG4722	N/A	N/A	Phage-related protein YomH	N/A
structural_annotation	UHGV-0113899_36	PF20195,TIGR01633,COG4722	N/A	N/A	N/A	N/A
PHROG	UHGV-0113899_37	phrog_1067	92.1	2.3e-27	minor head protein	head and packaging
UniRef90	UHGV-0113899_37	UniRef90_A0A1G5CPD2	141.0	1.48e-34	Phage minor structural protein, N-terminal region	N/A
eggNOG-mapper	UHGV-0113899_37	1160721.RBI_I01574	98.2	3.28e-19	Prophage endopeptidase tail	N/A
NCBIFam	UHGV-0113899_37	TIGR01665.1	N/A	N/A	phage tail spike protein	N/A
COG	UHGV-0113899_37	COG4926	N/A	N/A	Phage-related protein	N/A
structural_annotation	UHGV-0113899_37	PF14594,TIGR01665,COG4926	N/A	N/A	N/A	N/A
PHROG	UHGV-0113899_38	phrog_5302	263.1	0	tail protein	tail
UniRef90	UHGV-0113899_38	UniRef90_A0A373XLZ6	998.0	0	N/A	N/A
eggNOG-mapper	UHGV-0113899_38	742740.HMPREF9474_02337	306.0	0	cellulose 1,4-beta-cellobiosidase activity	N/A
COG	UHGV-0113899_38	COG5301	N/A	N/A	Phage-related tail fiber protein	N/A
structural_annotation	UHGV-0113899_38	COG1262	N/A	N/A	N/A	N/A

All viral genomes

ID	Representative?	Length (bps)	% GC Content	CheckV Completeness	geNomad Score
UHGV-0113899	Yes	30,756	40	87	1