vOTU vOTU-097542

vOTU: vOTU-097542

Overview

Genome (FASTA) Annotation Track (GFF) Proteins (FASTA) Protein Annotation (TSV)

Cluster properties
vOTU ID	vOTU-097542
Number of genomes	1
Taxonomy (ICTV)
Taxonomy (UHGV)	vFAM-00004 → vSUBFAM-01590 → vGENUS-01902 → vOTU-097542
Host lineage	Bacteria → Firmicutes_A → Clostridia → Oscillospirales → Oscillospiraceae
Host range breadth	Family
Lifestyle	temperate (Evidence: BACPHLIP)

Representative genome
Genome ID	UHGV-0613671
Biosample ID	SAMEA3444265
Genome length (bp)	37,337 bps
CheckV completeness	88.26% (Medium-quality)
CDS count	60
CDS density	92.82%
tRNA count	1
Integrase	No
Viral confidence	Confident

Host assignment details
Assignment method	CRISPR
CRISPR-predicted host lineage	Bacteria → Firmicutes_A → Clostridia → Oscillospirales → Oscillospiraceae	Total connections	22	Host agreement	86.36
PHIST-predicted host lineage		Total connections		Host agreement

Representative genome content

Select to view: Genome Viewer Functional Annotation

Genome view (completeness: 88.26)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
KOfam	UHGV-0613671_2	K03465	194.9	0	thyX, thy1; thymidylate synthase (FAD) [EC:2.1.1.148]	N/A
PHROG	UHGV-0613671_2	phrog_85	143.7	8.29569e-43	thymidylate synthase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0613671_2	UniRef90_A0A2A7B932	314.0	0	Thymidylate synthase (FAD)	N/A
eggNOG-mapper	UHGV-0613671_2	397290.C810_05227	254.0	0	Catalyzes the reductive methylation of 2'-deoxyuridine- 5'-monophosphate (dUMP) to 2'-deoxythymidine-5'-monophosphate (dTMP) while utilizing 5,10-methylenetetrahydrofolate (mTHF) as the methyl donor, and NADPH and FADH(2) as the reductant	N/A
Pfam	UHGV-0613671_2	PF02511	N/A	N/A	Thymidylate synthase complementing protein	Thy1
NCBIFam	UHGV-0613671_2	TIGR02170.1	N/A	N/A	FAD-dependent thymidylate synthase	N/A
COG	UHGV-0613671_2	COG1351	N/A	N/A	Thymidylate synthase ThyX, FAD-dependent family	N/A
structural_annotation	UHGV-0613671_2	PF02511,MF_01408,TIGR02170,COG1351	N/A	N/A	N/A	N/A
PHROG	UHGV-0613671_3	phrog_474	106.7	3.4e-31	phosphofructokinase	other
UniRef90	UHGV-0613671_3	UniRef90_UPI00103054B4	96.7	4.71e-24	N/A	N/A
eggNOG-mapper	UHGV-0613671_3	1095750.HMPREF9970_1026	87.8	2.6e-21	N/A	N/A
Pfam	UHGV-0613671_3	PF19905	N/A	N/A	N/A	DUF6378
structural_annotation	UHGV-0613671_3	PF19905	N/A	N/A	N/A	N/A
PHROG	UHGV-0613671_5	phrog_799	144.8	5.395e-43	DNA methyltransferase	other
UniRef90	UHGV-0613671_5	UniRef90_UPI000AAF359D	225.0	0	SAM-dependent DNA methyltransferase	N/A
eggNOG-mapper	UHGV-0613671_5	1519439.JPJG01000060_gene1874	225.0	0	site-specific DNA-methyltransferase (adenine-specific) activity	N/A
COG	UHGV-0613671_5	COG0286	N/A	N/A	Type I restriction-modification system, DNA methylase subunit	N/A
structural_annotation	UHGV-0613671_5	PF05869,MF_01872,NF000058,COG0286	N/A	N/A	N/A	N/A
PHROG	UHGV-0613671_6	phrog_924	45.0	0.0000000000012	N/A	unknown function
UniRef90	UHGV-0613671_6	UniRef90_U2SKB7	115.0	9.17e-31	N/A	N/A
Pfam	UHGV-0613671_6	PF04448	N/A	N/A	N/A	DUF551
structural_annotation	UHGV-0613671_6	NF041588	N/A	N/A	N/A	N/A
PHROG	UHGV-0613671_10	phrog_38832	80.8	1.2e-23	N/A	unknown function
eggNOG-mapper	UHGV-0613671_10	665956.HMPREF1032_03087	84.0	2.71e-18	N/A	N/A
structural_annotation	UHGV-0613671_10	PF11717,TIGR02450	N/A	N/A	N/A	N/A
PHROG	UHGV-0613671_11	phrog_599	41.7	0.000000000019	Lar-like restriction alleviation protein	moron, auxiliary metabolic gene and host takeover
UniRef90	UHGV-0613671_11	UniRef90_Q5YA82	95.5	5.55e-24	28	N/A
Pfam	UHGV-0613671_11	PF14354	N/A	N/A	Restriction alleviation protein Lar	Lar_restr_allev
dbAPIS	UHGV-0613671_11	APIS033	N/A	N/A	Lar is functionally similar to RaI, is able to alleviate restriction and enhance modification by EcoKI. And the nucleotide sequences of their genes share 47% identity, indicating a common origin.	N/A
UniRef90	UHGV-0613671_12	UniRef90_A0A8D9PDK2	57.0	0.0000000135	Zinc-ribbon containing domain	N/A
UniRef90	UHGV-0613671_14	UniRef90_A0A1Q9JGI6	136.0	1.95e-38	RHH_1 domain-containing protein	N/A
eggNOG-mapper	UHGV-0613671_14	1118055.CAGU01000028_gene99	109.0	1.38e-28	N/A	N/A
structural_annotation	UHGV-0613671_14	PF03869,NF041793,COG4691	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0613671_16	1297617.JPJD01000059_gene2640	85.9	1.37e-19	N/A	N/A
structural_annotation	UHGV-0613671_16	PF06530,TIGR01636	N/A	N/A	N/A	N/A
KOfam	UHGV-0613671_17	K03497	51.2	0.000000000000026	parB, spo0J; ParB family transcriptional regulator, chromosome partitioning protein	N/A
PHROG	UHGV-0613671_17	phrog_620	132.4	2.8e-39	ParB-like partition protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0613671_17	UniRef90_A0A3D3Y046	334.0	0	Chromosome partitioning protein ParB	N/A
eggNOG-mapper	UHGV-0613671_17	1211035.CD30_13045	113.0	3.94e-27	Belongs to the N(4) N(6)-methyltransferase family	N/A
PADLOC	UHGV-0613671_17	MTase_II_00015	84.7	1.7e-24	Type II methyltransferase	RM
Pfam	UHGV-0613671_17	PF02195	N/A	N/A	ParB/Sulfiredoxin domain	ParBc
COG	UHGV-0613671_17	COG0863	N/A	N/A	DNA modification methylase	N/A
structural_annotation	UHGV-0613671_17	PF02195,TIGR00180,COG5119	N/A	N/A	N/A	N/A
KOfam	UHGV-0613671_18	K21527	150.7	5.60519e-45	mom; adenine modification enzyme [EC:2.3.1.-]	N/A
PHROG	UHGV-0613671_18	phrog_1384	154.4	0	Mom-like DNA modification protein	other
UniRef90	UHGV-0613671_18	UniRef90_A0A516MP09	248.0	0	Putative adenine modification enzyme	N/A
eggNOG-mapper	UHGV-0613671_18	619693.HMPREF6745_2515	277.0	0	N/A	N/A
structural_annotation	UHGV-0613671_18	PF16092,MF_02210,NF007025,COG3818	N/A	N/A	N/A	N/A
KOfam	UHGV-0613671_20	K06909	387.4	0	xtmB; phage terminase large subunit	N/A
PHROG	UHGV-0613671_20	phrog_3717	163.5	0	terminase large subunit	head and packaging
UniRef90	UHGV-0613671_20	UniRef90_A0A2U1BEH4	728.0	0	PBSX family phage terminase large subunit	N/A
eggNOG-mapper	UHGV-0613671_20	33035.JPJF01000106_gene3136	475.0	0	Terminase small subunit	N/A
Pfam	UHGV-0613671_20	PF04466	N/A	N/A	Phage terminase large subunit	Terminase_3
Pfam	UHGV-0613671_20	PF17288	N/A	N/A	Terminase RNAseH like domain	Terminase_3C
NCBIFam	UHGV-0613671_20	TIGR01547.1	N/A	N/A	PBSX family phage terminase large subunit	N/A
COG	UHGV-0613671_20	COG1783	N/A	N/A	Phage terminase large subunit	N/A
structural_annotation	UHGV-0613671_20	PF04466,PF17288,MF_04145,TIGR01547,COG1783	N/A	N/A	N/A	N/A
PHROG	UHGV-0613671_21	phrog_533	380.8	0	portal protein	head and packaging
UniRef90	UHGV-0613671_21	UniRef90_A0A1C5N775	705.0	0	Phage portal protein, putative, A118 family	N/A
eggNOG-mapper	UHGV-0613671_21	1226322.HMPREF1545_00044	677.0	0	N/A	N/A
Pfam	UHGV-0613671_21	PF05133	N/A	N/A	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
structural_annotation	UHGV-0613671_21	PF05133,MF_04120,TIGR01542,COG5511	N/A	N/A	N/A	N/A
PHROG	UHGV-0613671_23	phrog_8680	232.2	0	N/A	unknown function
UniRef90	UHGV-0613671_23	UniRef90_A0A3R6D7I3	266.0	0	N/A	N/A
eggNOG-mapper	UHGV-0613671_23	411470.RUMGNA_02208	238.0	0	N/A	N/A
Pfam	UHGV-0613671_23	PF14386	N/A	N/A	N/A	DUF4417
structural_annotation	UHGV-0613671_23	PF14386	N/A	N/A	N/A	N/A
PHROG	UHGV-0613671_24	phrog_581	285.6	0	minor head protein	head and packaging
UniRef90	UHGV-0613671_24	UniRef90_A0A1C5N7V1	483.0	0	Phage minor capsid protein 2	N/A
eggNOG-mapper	UHGV-0613671_24	1226322.HMPREF1545_00046	331.0	0	Phage minor capsid protein 2	N/A
Pfam	UHGV-0613671_24	PF06152	N/A	N/A	Phage minor capsid protein 2	Phage_min_cap2
COG	UHGV-0613671_24	COG2369	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0613671_24	PF06152	N/A	N/A	N/A	N/A
PHROG	UHGV-0613671_25	phrog_2303	56.8	3.5e-16	head scaffolding protein	head and packaging
eggNOG-mapper	UHGV-0613671_25	1226322.HMPREF1545_00049	184.0	0	N/A	N/A
PHROG	UHGV-0613671_26	phrog_10	165.1	0	major head protein	head and packaging
UniRef90	UHGV-0613671_26	UniRef90_A0A2U1BEF2	531.0	0	HK97 family phage major capsid protein	N/A
eggNOG-mapper	UHGV-0613671_26	1226322.HMPREF1545_00050	473.0	0	Phage capsid family	N/A
Pfam	UHGV-0613671_26	PF05065	N/A	N/A	Phage capsid family	Phage_capsid
NCBIFam	UHGV-0613671_26	TIGR01554.2	N/A	N/A	phage major capsid protein	N/A
COG	UHGV-0613671_26	COG4653	N/A	N/A	Predicted phage phi-C31 gp36 major capsid-like protein	N/A
structural_annotation	UHGV-0613671_26	PF05065,PF13620,MF_04119,TIGR01554,COG4653	N/A	N/A	N/A	N/A
PHROG	UHGV-0613671_27	phrog_541	103.9	1e-30	head-tail adaptor	connector
eggNOG-mapper	UHGV-0613671_27	1120998.AUFC01000030_gene2237	77.4	2.13e-16	N/A	N/A
PHROG	UHGV-0613671_28	phrog_3366	95.6	4.3e-28	N/A	unknown function
eggNOG-mapper	UHGV-0613671_28	1226322.HMPREF1545_00053	192.0	0	N/A	N/A
structural_annotation	UHGV-0613671_28	PF20536,TIGR01563	N/A	N/A	N/A	N/A
PHROG	UHGV-0613671_29	phrog_556	68.8	6e-20	minor head protein	head and packaging
UniRef90	UHGV-0613671_29	UniRef90_A0A1C5N8K8	125.0	4.68e-34	Minor capsid protein	N/A
eggNOG-mapper	UHGV-0613671_29	1226322.HMPREF1545_00054	104.0	8.62e-27	Minor capsid protein	N/A
Pfam	UHGV-0613671_29	PF11114	N/A	N/A	Minor capsid protein	Minor_capsid_2
structural_annotation	UHGV-0613671_29	PF11114,TIGR01725	N/A	N/A	N/A	N/A
PHROG	UHGV-0613671_30	phrog_3266	51.3	0.000000000000016	tail completion	connector
eggNOG-mapper	UHGV-0613671_30	1232443.BAIA02000078_gene24	181.0	0	N/A	N/A
structural_annotation	UHGV-0613671_30	PF12691	N/A	N/A	N/A	N/A
PHROG	UHGV-0613671_31	phrog_3099	104.2	1.2e-30	N/A	unknown function
eggNOG-mapper	UHGV-0613671_31	1232443.BAIA02000078_gene23	275.0	0	N/A	N/A
structural_annotation	UHGV-0613671_31	PF10772,TIGR02126,COG3499	N/A	N/A	N/A	N/A
PHROG	UHGV-0613671_32	phrog_11299	78.7	8.2e-23	N/A	unknown function
eggNOG-mapper	UHGV-0613671_32	693746.OBV_18160	200.0	0	N/A	N/A
structural_annotation	UHGV-0613671_32	PF10666	N/A	N/A	N/A	N/A
PHROG	UHGV-0613671_33	phrog_706	120.2	1.6e-35	N/A	unknown function
UniRef90	UHGV-0613671_33	UniRef90_UPI000682A80B	218.0	0	Gp15 family bacteriophage protein	N/A
eggNOG-mapper	UHGV-0613671_33	693746.OBV_18170	203.0	0	Bacteriophage Gp15 protein	N/A
Pfam	UHGV-0613671_33	PF06854	N/A	N/A	Bacteriophage Gp15 protein	Phage_Gp15
structural_annotation	UHGV-0613671_33	PF06854	N/A	N/A	N/A	N/A
PHROG	UHGV-0613671_34	phrog_8545	51.4	0.000000000000017	superinfection exclusion Sie-like	moron, auxiliary metabolic gene and host takeover
UniRef90	UHGV-0613671_34	UniRef90_A0A1V5ZUI6	58.9	0.00000044	tRNA_anti-like protein	N/A
eggNOG-mapper	UHGV-0613671_34	1266909.AUAG01000020_gene233	60.1	0.00000000599	tRNA_anti-like	N/A
Pfam	UHGV-0613671_34	PF13240	N/A	N/A	zinc-ribbon domain	zinc_ribbon_2
Pfam	UHGV-0613671_34	PF12869	N/A	N/A	tRNA_anti-like	tRNA_anti-like
structural_annotation	UHGV-0613671_34	PF12869,PF10571,MF_01959,TIGR03943,COG5235	N/A	N/A	N/A	N/A
PHROG	UHGV-0613671_35	phrog_1535	100.3	1e-38	tail length tape measure protein	tail
UniRef90	UHGV-0613671_35	UniRef90_A0A810PX76	105.0	9.47e-20	Phage tail tape measure protein	N/A
eggNOG-mapper	UHGV-0613671_35	1235797.C816_04182	149.0	3.02e-34	SLT domain	N/A
COG	UHGV-0613671_35	COG1511	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0613671_35	PF05546,TIGR02559	N/A	N/A	N/A	N/A
PHROG	UHGV-0613671_36	phrog_1194	56.4	4.9e-16	N/A	unknown function
eggNOG-mapper	UHGV-0613671_36	693746.OBV_18200	204.0	0	N/A	N/A
structural_annotation	UHGV-0613671_36	PF20458,TIGR01633,COG3499	N/A	N/A	N/A	N/A
PHROG	UHGV-0613671_37	phrog_13879	252.9	0	N/A	unknown function
eggNOG-mapper	UHGV-0613671_37	693746.OBV_18210	485.0	0	N/A	N/A
structural_annotation	UHGV-0613671_37	PF14594,PF03256,NF033848,COG4379,COG5156	N/A	N/A	N/A	N/A
PHROG	UHGV-0613671_38	phrog_1589	139.7	9.4994e-42	N/A	unknown function
UniRef90	UHGV-0613671_38	UniRef90_UPI001D105CDC	109.0	2.1e-22	glycine-rich protein	N/A
eggNOG-mapper	UHGV-0613671_38	1151292.QEW_2455	105.0	7.42e-22	N/A	N/A
Pfam	UHGV-0613671_38	PF12810	N/A	N/A	Glycine rich protein	Gly_rich
structural_annotation	UHGV-0613671_38	PF12810,PF16893,TIGR04488,COG3979	N/A	N/A	N/A	N/A
KOfam	UHGV-0613671_39	K13276	53.1	0.0000000000000021	bpr; bacillopeptidase F [EC:3.4.21.-]	N/A
PHROG	UHGV-0613671_39	phrog_11157	238.0	0	N/A	unknown function
UniRef90	UHGV-0613671_39	UniRef90_UPI001C10C6DC	419.0	0	Ig-like domain-containing protein	N/A
eggNOG-mapper	UHGV-0613671_39	1286171.EAL2_c11220	300.0	0	amine dehydrogenase activity	N/A
Pfam	UHGV-0613671_39	PF19077	N/A	N/A	Bacterial Ig-like domain	Big_13
Pfam	UHGV-0613671_39	PF09136	N/A	N/A	Glucodextranase, domain B	Glucodextran_B
COG	UHGV-0613671_39	COG3391	N/A	N/A	DNA-binding beta-propeller fold protein YncE	N/A
structural_annotation	UHGV-0613671_39	PF09136,PF13205,PF13754,MF_04116,NF032891,COG2372,COG5456	N/A	N/A	N/A	N/A
PHROG	UHGV-0613671_40	phrog_18725	116.0	1.5e-34	N/A	unknown function
eggNOG-mapper	UHGV-0613671_40	1226322.HMPREF1545_00062	154.0	8.40779e-45	N/A	N/A
structural_annotation	UHGV-0613671_40	PF13754,COG2372	N/A	N/A	N/A	N/A
PHROG	UHGV-0613671_41	phrog_863	61.1	2.9e-17	tail fiber assembly	tail
structural_annotation	UHGV-0613671_41	PF21722	N/A	N/A	N/A	N/A
PHROG	UHGV-0613671_44	phrog_4105	51.4	0.0000000000000078	N/A	unknown function
eggNOG-mapper	UHGV-0613671_44	742733.HMPREF9469_05011	53.5	0.000000123	N/A	N/A
PHROG	UHGV-0613671_46	phrog_13256	61.7	7.8e-18	N/A	unknown function
eggNOG-mapper	UHGV-0613671_46	1226322.HMPREF1545_02800	70.5	0.00000000000000129	N/A	N/A
KOfam	UHGV-0613671_47	K01448	62.7	6.5e-18	amiABC; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]	N/A
PHROG	UHGV-0613671_47	phrog_435	106.4	2.4e-31	endolysin	lysis
UniRef90	UHGV-0613671_47	UniRef90_UPI0015FC0193	64.7	0.000000168	N-acetylmuramoyl-L-alanine amidase	N/A
eggNOG-mapper	UHGV-0613671_47	999413.HMPREF1094_01993	115.0	5.1e-26	N-acetylmuramoyl-L-alanine amidase	N/A
Pfam	UHGV-0613671_47	PF01520	N/A	N/A	N-acetylmuramoyl-L-alanine amidase	Amidase_3
Pfam	UHGV-0613671_47	PF09992	N/A	N/A	Phosphodiester glycosidase	NAGPA
COG	UHGV-0613671_47	COG0860	N/A	N/A	N-acetylmuramoyl-L-alanine amidase	N/A
structural_annotation	UHGV-0613671_47	PF01520,PF01832,NF038016,NF038140,NF041850,COG1705,COG0860,COG3807	N/A	N/A	N/A	N/A
UniRef90	UHGV-0613671_48	UniRef90_UPI001C037734	85.9	8.19e-21	LuxR C-terminal-related transcriptional regulator	N/A
Pfam	UHGV-0613671_48	PF04545	N/A	N/A	Sigma-70, region 4	Sigma70_r4
structural_annotation	UHGV-0613671_48	PF04545,MF_00245,NF001067,COG2771	N/A	N/A	N/A	N/A
PHROG	UHGV-0613671_50	phrog_3754	91.9	7.1e-27	N/A	unknown function
eggNOG-mapper	UHGV-0613671_50	476272.RUMHYD_01764	160.0	0	N/A	N/A
PHROG	UHGV-0613671_51	phrog_21718	115.2	4.2e-34	N/A	unknown function
eggNOG-mapper	UHGV-0613671_51	397290.C810_05210	101.0	2.4e-25	N/A	N/A
PHROG	UHGV-0613671_52	phrog_22984	78.0	5.8e-23	N/A	unknown function
PHROG	UHGV-0613671_53	phrog_16490	146.6	1.79366e-43	N/A	unknown function
eggNOG-mapper	UHGV-0613671_53	1408437.JNJN01000043_gene803	104.0	3.42e-24	N/A	N/A
PHROG	UHGV-0613671_55	phrog_20016	211.1	0	N/A	unknown function
UniRef90	UHGV-0613671_55	UniRef90_A0A285PT46	197.0	0	Tumour necrosis factor-like domain	N/A
eggNOG-mapper	UHGV-0613671_55	397290.C810_05214	178.0	0	N/A	N/A
structural_annotation	UHGV-0613671_55	PF18573,NF033147	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0613671_56	476272.RUMHYD_01772	65.5	0.0000000000205	N/A	N/A
structural_annotation	UHGV-0613671_56	PF12510	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0613671_57	1226322.HMPREF1545_00079	75.1	3.61e-16	N/A	N/A
KOfam	UHGV-0613671_58	K14059	228.5	0	int; integrase	N/A
PHROG	UHGV-0613671_58	phrog_1	222.4	0	integrase	integration and excision
UniRef90	UHGV-0613671_58	UniRef90_R5HDB9	325.0	0	Integrase family protein	N/A
eggNOG-mapper	UHGV-0613671_58	1321814.HMPREF9089_00905	191.0	0	Phage integrase, N-terminal SAM-like domain	N/A
Pfam	UHGV-0613671_58	PF14659	N/A	N/A	Phage integrase, N-terminal SAM-like domain	Phage_int_SAM_3
Pfam	UHGV-0613671_58	PF00589	N/A	N/A	Phage integrase family	Phage_integrase
COG	UHGV-0613671_58	COG0582	N/A	N/A	Integrase/recombinase, includes phage integrase	N/A
structural_annotation	UHGV-0613671_58	PF00589,PF14659,MF_02055,TIGR02224,COG4974	N/A	N/A	N/A	N/A

All viral genomes

ID	Representative?	Length (bps)	% GC Content	CheckV Completeness	geNomad Score
UHGV-0613671	Yes	37,337	56	88	1