vOTU vOTU-097942

vOTU: vOTU-097942

Overview

Genome (FASTA) Annotation Track (GFF) Proteins (FASTA) Protein Annotation (TSV)

Cluster properties
vOTU ID	vOTU-097942
Number of genomes	1
Taxonomy (ICTV)	Bacteria → Firmicutes_A → Clostridia → Clostridiales → Clostridiaceae → Clostridium → Clostridium saudiense
Taxonomy (UHGV)	vFAM-00114 → vSUBFAM-04596 → vOTU-097942
Host lineage	Bacteria → Firmicutes_A → Clostridia → Clostridiales → Clostridiaceae → Clostridium → Clostridium saudiense
Host range breadth	Species
Lifestyle	temperate (Evidence: integrase)

Representative genome
Genome ID	UHGV-1908893
Biosample ID	N/A
Genome length (bp)	34,044 bps
CheckV completeness	62.00% (Medium-quality)
CDS count	42
CDS density	87.28%
tRNA count	0
Integrase	Yes
Viral confidence	Confident

Host assignment details
Assignment method	PHIST
CRISPR-predicted host lineage		Total connections		Host agreement
PHIST-predicted host lineage	Bacteria → Firmicutes_A → Clostridia → Clostridiales → Clostridiaceae → Clostridium → Clostridium saudiense	Total connections	7	Host agreement	85.71

Representative genome content

Select to view: Genome Viewer Functional Annotation

Genome view (completeness: 62)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
KOfam	UHGV-1908893_1	K18640	64.3	2e-18	parM, stbA; plasmid segregation protein ParM	N/A
PHROG	UHGV-1908893_1	phrog_691	51.6	0.00000000000001	partition protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1908893_1	UniRef90_A0A174AJX4	416.0	0	Heat shock protein 70	N/A
eggNOG-mapper	UHGV-1908893_1	748727.CLJU_c16640	195.0	0	cell division	N/A
COG	UHGV-1908893_1	COG0849	N/A	N/A	Cell division ATPase FtsA	N/A
UniRef90	UHGV-1908893_3	UniRef90_UPI0003A7FFFB	93.6	3.33e-24	N/A	N/A
PHROG	UHGV-1908893_4	phrog_8308	337.4	0	N/A	unknown function
UniRef90	UHGV-1908893_4	UniRef90_A0A174AK81	613.0	0	Phage related protein	N/A
eggNOG-mapper	UHGV-1908893_4	86416.Clopa_2811	579.0	0	N/A	N/A
structural_annotation	UHGV-1908893_4	PF05183	N/A	N/A	N/A	N/A
KOfam	UHGV-1908893_6	K07012	42.4	0.0000000000053	cas3; CRISPR-associated endonuclease/helicase Cas3 [EC:3.1.-.- 5.6.2.4]	N/A
PHROG	UHGV-1908893_6	phrog_16	85.0	6.1e-25	DNA helicase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1908893_6	UniRef90_UPI00156FD522	435.0	0	DEAD/DEAH box helicase	N/A
eggNOG-mapper	UHGV-1908893_6	536233.CLO_2535	315.0	0	Type III restriction enzyme, res subunit	N/A
PADLOC	UHGV-1908893_6	PbeA_00005	40.5	0.0000000000011	PbeA	PBE
Pfam	UHGV-1908893_6	PF00270	N/A	N/A	DEAD/DEAH box helicase	DEAD
Pfam	UHGV-1908893_6	PF00271	N/A	N/A	Helicase conserved C-terminal domain	Helicase_C
structural_annotation	UHGV-1908893_6	PF02399,MF_00964,NF003419,COG0513	N/A	N/A	N/A	N/A
KOfam	UHGV-1908893_7	K17677	398.9	0	IRC3; ATP-dependent helicase IRC3 [EC:5.6.2.-]	N/A
PHROG	UHGV-1908893_7	phrog_16	258.9	0	DNA helicase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1908893_7	UniRef90_L1QF46	726.0	0	Helicase protein	N/A
eggNOG-mapper	UHGV-1908893_7	545697.HMPREF0216_01756	726.0	0	helicase superfamily c-terminal domain	N/A
PADLOC	UHGV-1908893_7	mREase_IV_00005	89.4	3.6e-26	Type IV methyl-directed restriction enzyme	RM
Pfam	UHGV-1908893_7	PF04851	N/A	N/A	Type III restriction enzyme, res subunit	ResIII
Pfam	UHGV-1908893_7	PF00271	N/A	N/A	Helicase conserved C-terminal domain	Helicase_C
COG	UHGV-1908893_7	COG1061	N/A	N/A	Superfamily II DNA or RNA helicase	N/A
Pfam	UHGV-1908893_13	PF18903	N/A	N/A	N/A	DUF5659
PHROG	UHGV-1908893_15	phrog_2538	71.8	7.7e-21	terminase small subunit	head and packaging
UniRef90	UHGV-1908893_15	UniRef90_A0A7G5NTL4	114.0	9.24e-30	HTH_Tnp_1_2 domain-containing protein	N/A
eggNOG-mapper	UHGV-1908893_15	1345695.CLSA_c30000	141.0	3.16007e-41	N/A	N/A
structural_annotation	UHGV-1908893_15	PF13022,COG3677	N/A	N/A	N/A	N/A
KOfam	UHGV-1908893_16	K14060	115.0	7.4e-34	pinR; putative DNA-invertase from lambdoid prophage Rac	N/A
PHROG	UHGV-1908893_16	phrog_125	147.0	9.94922e-44	DNA invertase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1908893_16	UniRef90_UPI0006C3AFF3	382.0	0	recombinase family protein	N/A
eggNOG-mapper	UHGV-1908893_16	641107.CDLVIII_3183	299.0	0	Resolvase, N terminal domain	N/A
Pfam	UHGV-1908893_16	PF00239	N/A	N/A	Resolvase, N terminal domain	Resolvase
COG	UHGV-1908893_16	COG1961	N/A	N/A	Site-specific DNA recombinase SpoIVCA/DNA invertase PinE	N/A
structural_annotation	UHGV-1908893_16	PF00239,PF02796,NF009949,COG1961	N/A	N/A	N/A	N/A
PHROG	UHGV-1908893_18	phrog_1758	96.4	5.1e-30	acetyltransferase	other
UniRef90	UHGV-1908893_18	UniRef90_A0A060N362	226.0	0	Acetyltransferase, gnat family	N/A
eggNOG-mapper	UHGV-1908893_18	717606.PaecuDRAFT_2625	169.0	0	acetyltransferase	N/A
Pfam	UHGV-1908893_18	PF13673	N/A	N/A	Acetyltransferase (GNAT) domain	Acetyltransf_10
COG	UHGV-1908893_18	COG0454	N/A	N/A	N-acetyltransferase, GNAT superfamily (includes histone acetyltransferase HPA2)	N/A
structural_annotation	UHGV-1908893_18	PF13673,MF_00824,NF010241,COG3153	N/A	N/A	N/A	N/A
PHROG	UHGV-1908893_19	phrog_38	221.0	0	terminase large subunit	head and packaging
UniRef90	UHGV-1908893_19	UniRef90_UPI0006C4E0BD	1028.0	0	terminase	N/A
eggNOG-mapper	UHGV-1908893_19	1443125.Z962_07895	729.0	0	TIGRFAM Phage	N/A
COG	UHGV-1908893_19	COG5362	N/A	N/A	Phage terminase large subunit	N/A
structural_annotation	UHGV-1908893_19	PF17289,PF03354,MF_04147,NF033889,COG5410,COG5362	N/A	N/A	N/A	N/A
PHROG	UHGV-1908893_20	phrog_64	256.7	0	portal protein	head and packaging
UniRef90	UHGV-1908893_20	UniRef90_UPI0006C08419	879.0	0	phage portal protein	N/A
eggNOG-mapper	UHGV-1908893_20	1415774.U728_1093	503.0	0	portal protein, SPP1 Gp6-like	N/A
Pfam	UHGV-1908893_20	PF05133	N/A	N/A	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
structural_annotation	UHGV-1908893_20	PF05133,MF_04120,TIGR01538,COG5511	N/A	N/A	N/A	N/A
PHROG	UHGV-1908893_21	phrog_115	172.4	0	minor head protein	head and packaging
UniRef90	UHGV-1908893_21	UniRef90_UPI0006C641A8	545.0	0	minor capsid protein	N/A
eggNOG-mapper	UHGV-1908893_21	1499683.CCFF01000005_gene66	248.0	0	Phage Mu protein F like protein	N/A
Pfam	UHGV-1908893_21	PF04233	N/A	N/A	Phage Mu protein F like protein	Phage_Mu_F
NCBIFam	UHGV-1908893_21	TIGR01641.1	N/A	N/A	minor capsid protein	N/A
COG	UHGV-1908893_21	COG2369	N/A	N/A	N/A	N/A
structural_annotation	UHGV-1908893_21	PF04233,TIGR01641,COG2369	N/A	N/A	N/A	N/A
PHROG	UHGV-1908893_22	phrog_172	79.6	5.1e-23	head scaffolding protein	head and packaging
UniRef90	UHGV-1908893_22	UniRef90_UPI0006C20523	308.0	0	N/A	N/A
eggNOG-mapper	UHGV-1908893_22	1499683.CCFF01000017_gene2146	159.0	0	N/A	N/A
Pfam	UHGV-1908893_22	PF14265	N/A	N/A	N/A	DUF4355
structural_annotation	UHGV-1908893_22	PF14265	N/A	N/A	N/A	N/A
PHROG	UHGV-1908893_23	phrog_422	309.9	0	major head protein	head and packaging
UniRef90	UHGV-1908893_23	UniRef90_A0A3P6KSI0	324.0	0	N/A	N/A
eggNOG-mapper	UHGV-1908893_23	536233.CLO_1567	318.0	0	N/A	N/A
structural_annotation	UHGV-1908893_23	PF21703,MF_04119,TIGR04387,COG4834	N/A	N/A	N/A	N/A
UniRef90	UHGV-1908893_24	UniRef90_A0A6B4N3Y5	56.6	0.0000000243	Phage head-tail connector protein	N/A
eggNOG-mapper	UHGV-1908893_24	1415774.U728_720	58.5	0.000000000722	N/A	N/A
eggNOG-mapper	UHGV-1908893_25	1321778.HMPREF1982_03552	54.3	0.0000000371	N/A	N/A
structural_annotation	UHGV-1908893_25	PF07405,TIGR01563,COG5614	N/A	N/A	N/A	N/A
PHROG	UHGV-1908893_26	phrog_5	43.8	0.0000000000061	tail completion or Neck1 protein	connector
UniRef90	UHGV-1908893_26	UniRef90_UPI0006BFDA1B	194.0	0	HK97 gp10 family phage protein	N/A
Pfam	UHGV-1908893_26	PF04883	N/A	N/A	Bacteriophage HK97-gp10, putative tail-component	HK97-gp10_like
structural_annotation	UHGV-1908893_26	PF04883,TIGR01725	N/A	N/A	N/A	N/A
structural_annotation	UHGV-1908893_27	PF20765	N/A	N/A	N/A	N/A
PHROG	UHGV-1908893_28	phrog_885	43.7	0.0000000000025	major tail protein	tail
structural_annotation	UHGV-1908893_28	PF06488,TIGR01603,COG5437	N/A	N/A	N/A	N/A
PHROG	UHGV-1908893_29	phrog_1021	44.1	0.0000000000011	N/A	unknown function
PHROG	UHGV-1908893_31	phrog_17020	117.8	1.2e-38	N/A	unknown function
UniRef90	UHGV-1908893_31	UniRef90_UPI0006C020C3	1034.0	0	tape measure protein	N/A
eggNOG-mapper	UHGV-1908893_31	1499683.CCFF01000005_gene78	639.0	0	phage tail tape measure protein	N/A
Pfam	UHGV-1908893_31	PF20155	N/A	N/A	Tape measure protein	TMP_3
NCBIFam	UHGV-1908893_31	TIGR02675.1	N/A	N/A	tape measure protein	N/A
COG	UHGV-1908893_31	COG3941	N/A	N/A	Phage tail tape-measure protein, controls tail length	N/A
structural_annotation	UHGV-1908893_31	PF20155,COG3941	N/A	N/A	N/A	N/A
PHROG	UHGV-1908893_32	phrog_33	83.9	2.9e-24	distal tail protein Dit	tail
UniRef90	UHGV-1908893_32	UniRef90_UPI0006C51AB9	502.0	0	phage tail family protein	N/A
eggNOG-mapper	UHGV-1908893_32	1499683.CCFF01000017_gene2156	201.0	0	tail component	N/A
COG	UHGV-1908893_32	COG4722	N/A	N/A	Phage-related protein YomH	N/A
structural_annotation	UHGV-1908893_32	PF20195,TIGR01633,COG4722	N/A	N/A	N/A	N/A
UniRef90	UHGV-1908893_33	UniRef90_A0A1C6CWB5	313.0	0	Phage tail protein	N/A
Pfam	UHGV-1908893_33	PF20753	N/A	N/A	Phage tail C-terminal domain	DUF6558_C
PHROG	UHGV-1908893_34	phrog_7043	313.2	0	tail protein	tail
UniRef90	UHGV-1908893_34	UniRef90_UPI000AB4EEF7	1220.0	0	phage tail protein	N/A
eggNOG-mapper	UHGV-1908893_34	1499683.CCFF01000017_gene2158	477.0	0	Phage minor structural protein	N/A
Pfam	UHGV-1908893_34	PF06605	N/A	N/A	Prophage endopeptidase tail	Prophage_tail
NCBIFam	UHGV-1908893_34	TIGR01665.1	N/A	N/A	phage tail spike protein	N/A
COG	UHGV-1908893_34	COG4926	N/A	N/A	Phage-related protein	N/A
structural_annotation	UHGV-1908893_34	PF14594,TIGR01665,COG4926	N/A	N/A	N/A	N/A
PHROG	UHGV-1908893_35	phrog_2429	88.9	3.2e-26	involved in bacteriocin production or immunity	moron, auxiliary metabolic gene and host takeover
UniRef90	UHGV-1908893_35	UniRef90_UPI0018A91C78	137.0	4.52003e-41	BhlA/UviB family holin-like peptide	N/A
eggNOG-mapper	UHGV-1908893_35	536232.CLM_2038	77.4	6.25e-18	BhlA holin family	N/A
Pfam	UHGV-1908893_35	PF10960	N/A	N/A	BhlA holin family	Holin_BhlA
COG	UHGV-1908893_36	COG4263	N/A	N/A	Nitrous oxide reductase	N/A
KOfam	UHGV-1908893_37	K06400	254.2	0	spoIVCA; site-specific DNA recombinase	N/A
PHROG	UHGV-1908893_37	phrog_95	220.5	0	integrase	integration and excision
UniRef90	UHGV-1908893_37	UniRef90_A0A1C6L0Y0	1059.0	0	Recombinase	N/A
eggNOG-mapper	UHGV-1908893_37	536233.CLO_2511	250.0	0	resolvase	N/A
Pfam	UHGV-1908893_37	PF00239	N/A	N/A	Resolvase, N terminal domain	Resolvase
Pfam	UHGV-1908893_37	PF07508	N/A	N/A	Recombinase	Recombinase
Pfam	UHGV-1908893_37	PF13408	N/A	N/A	Recombinase zinc beta ribbon domain	Zn_ribbon_recom
COG	UHGV-1908893_37	COG1961	N/A	N/A	Site-specific DNA recombinase SpoIVCA/DNA invertase PinE	N/A
structural_annotation	UHGV-1908893_37	PF00239,PF07508,PF13408,NF041201,COG1961	N/A	N/A	N/A	N/A
KOfam	UHGV-1908893_38	K06993	46.6	0.00000000000041	K06993; ribonuclease H-related protein	N/A
UniRef90	UHGV-1908893_38	UniRef90_A0A1C6HGW1	200.0	0	Ribonuclease H	N/A
eggNOG-mapper	UHGV-1908893_38	1280689.AUJC01000001_gene2192	51.2	0.00000566	Caulimovirus viroplasmin	N/A
Pfam	UHGV-1908893_38	PF01693	N/A	N/A	Caulimovirus viroplasmin	Cauli_VI
COG	UHGV-1908893_38	COG0328	N/A	N/A	Ribonuclease HI	N/A
UniRef90	UHGV-1908893_42	UniRef90_UPI0018A91A83	97.8	7.97e-26	ribbon-helix-helix protein, CopG family	N/A
Pfam	UHGV-1908893_42	PF07878	N/A	N/A	CopG-like RHH_1 or ribbon-helix-helix domain, RHH_5	RHH_5

All viral genomes

ID	Representative?	Length (bps)	% GC Content	CheckV Completeness	geNomad Score
UHGV-1908893	Yes	34,044	28	62	1