vOTU vOTU-098078

vOTU: vOTU-098078

Overview

Genome (FASTA) Annotation Track (GFF) Proteins (FASTA) Protein Annotation (TSV)

Cluster properties
vOTU ID	vOTU-098078
Number of genomes	1
Taxonomy (ICTV)	Bacteria → Firmicutes_A → Clostridia → Lachnospirales → Lachnospiraceae → Agathobacter → Agathobacter faecis
Taxonomy (UHGV)	vFAM-00007 → vSUBFAM-00040 → vGENUS-00013 → vOTU-098078
Host lineage	Bacteria → Firmicutes_A → Clostridia → Lachnospirales → Lachnospiraceae → Agathobacter
Host range breadth	Genus
Lifestyle	temperate (Evidence: BACPHLIP)

Representative genome
Genome ID	UHGV-1415385
Biosample ID	SAMEA2581889
Genome length (bp)	43,349 bps
CheckV completeness	75.23% (Medium-quality)
CDS count	71
CDS density	85.28%
tRNA count	3
Integrase	No
Viral confidence	Confident

Host assignment details
Assignment method	CRISPR
CRISPR-predicted host lineage	Bacteria → Firmicutes_A → Clostridia → Lachnospirales → Lachnospiraceae → Agathobacter	Total connections	2157	Host agreement	85.49
PHIST-predicted host lineage	Bacteria → Firmicutes_A → Clostridia → Lachnospirales → Lachnospiraceae → Agathobacter → Agathobacter faecis	Total connections	8	Host agreement	87.5

Representative genome content

Select to view: Genome Viewer Functional Annotation

Genome view (completeness: 75.23)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
PHROG	UHGV-1415385_1	phrog_18361	127.4	4.6e-38	N/A	unknown function
UniRef90	UHGV-1415385_1	UniRef90_A0A4P6LRJ9	135.0	1.23e-37	ASCH domain-containing protein	N/A
eggNOG-mapper	UHGV-1415385_1	411468.CLOSCI_00298	135.0	2.65e-38	N/A	N/A
PHROG	UHGV-1415385_3	phrog_424	95.2	6.7e-28	phosphoadenosine phosphosulfate reductase	moron, auxiliary metabolic gene and host takeover
UniRef90	UHGV-1415385_3	UniRef90_A0A6L6XK67	417.0	0	Phosphoadenosine phosphosulfate reductase	N/A
eggNOG-mapper	UHGV-1415385_3	903814.ELI_3131	257.0	0	sulfate reduction	N/A
PADLOC	UHGV-1415385_3	SspD_00001	40.6	0.000000000067	SspD	SSP
COG	UHGV-1415385_3	COG0175	N/A	N/A	3'-phosphoadenosine 5'-phosphosulfate sulfotransferase (PAPS reductase)/FAD synthetase or related enzyme	N/A
structural_annotation	UHGV-1415385_3	PF01507,MF_00063,NF002537,COG0175	N/A	N/A	N/A	N/A
KOfam	UHGV-1415385_4	K00571	112.2	4.9e-33	E2.1.1.72; site-specific DNA-methyltransferase (adenine-specific) [EC:2.1.1.72]	N/A
PHROG	UHGV-1415385_4	phrog_23224	205.6	0	DNA methyltransferase	other
UniRef90	UHGV-1415385_4	UniRef90_UPI000462F5E4	369.0	0	site-specific DNA-methyltransferase	N/A
eggNOG-mapper	UHGV-1415385_4	1345695.CLSA_c30050	261.0	0	DNA methylase	N/A
PADLOC	UHGV-1415385_4	MTase_II_00172	98.4	5.8e-31	Type II methyltransferase	RM
Pfam	UHGV-1415385_4	PF01555	N/A	N/A	DNA methylase	N6_N4_Mtase
COG	UHGV-1415385_4	COG0863	N/A	N/A	DNA modification methylase	N/A
structural_annotation	UHGV-1415385_4	PF01555,NF010253,COG0863	N/A	N/A	N/A	N/A
PHROG	UHGV-1415385_5	phrog_757	69.6	2.8e-20	DNA methyltransferase	other
eggNOG-mapper	UHGV-1415385_5	658655.HMPREF0988_00884	300.0	0	N/A	N/A
AcrCatalog	UHGV-1415385_5	cluster_47493	197.0	0	NA	N/A
structural_annotation	UHGV-1415385_5	PF00145,MF_00341,COG0270	N/A	N/A	N/A	N/A
UniRef90	UHGV-1415385_6	UniRef90_A0A173RE24	149.0	1.4013e-45	Bacterial regulatory proteins, luxR family	N/A
Pfam	UHGV-1415385_6	PF00196	N/A	N/A	Bacterial regulatory proteins, luxR family	GerE
structural_annotation	UHGV-1415385_6	PF00196,MF_00245,NF001067,COG2771	N/A	N/A	N/A	N/A
KOfam	UHGV-1415385_7	K14059	114.2	1.7e-33	int; integrase	N/A
PHROG	UHGV-1415385_7	phrog_1	115.2	6.8e-34	integrase	integration and excision
UniRef90	UHGV-1415385_7	UniRef90_A0A173REA3	783.0	0	Site-specific tyrosine recombinase XerD	N/A
eggNOG-mapper	UHGV-1415385_7	97139.C824_00125	327.0	0	Phage integrase family	N/A
Pfam	UHGV-1415385_7	PF00589	N/A	N/A	Phage integrase family	Phage_integrase
COG	UHGV-1415385_7	COG0582	N/A	N/A	Integrase/recombinase, includes phage integrase	N/A
structural_annotation	UHGV-1415385_7	PF00589,PF02920,MF_02055,TIGR02224,COG4974	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-1415385_9	658655.HMPREF0988_00919	89.7	2.03e-20	N/A	N/A
eggNOG-mapper	UHGV-1415385_10	658655.HMPREF0988_00918	89.0	1.85e-22	N/A	N/A
PHROG	UHGV-1415385_11	phrog_16490	197.5	0	N/A	unknown function
eggNOG-mapper	UHGV-1415385_11	397290.C810_01328	185.0	0	N/A	N/A
PHROG	UHGV-1415385_12	phrog_20016	231.6	0	N/A	unknown function
UniRef90	UHGV-1415385_12	UniRef90_A0A285PT46	164.0	0	Tumour necrosis factor-like domain	N/A
eggNOG-mapper	UHGV-1415385_12	397290.C810_05214	231.0	0	N/A	N/A
structural_annotation	UHGV-1415385_12	PF18573,NF033147	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-1415385_13	658655.HMPREF0988_00915	105.0	3.72e-25	N/A	N/A
PHROG	UHGV-1415385_14	phrog_1233	51.9	0.000000000000014	N/A	unknown function
eggNOG-mapper	UHGV-1415385_14	397290.C810_01336	92.0	7.83e-23	N/A	N/A
PHROG	UHGV-1415385_18	phrog_31631	40.6	0.000000000029	N/A	unknown function
eggNOG-mapper	UHGV-1415385_18	397290.C810_01351	53.5	0.0000000082	N/A	N/A
PHROG	UHGV-1415385_19	phrog_4608	138.3	5.60001e-41	anti-repressor	transcription regulation
UniRef90	UHGV-1415385_19	UniRef90_A0A1C5WGK5	153.0	1.10983e-42	ORF6N domain	N/A
eggNOG-mapper	UHGV-1415385_19	658655.HMPREF0988_00907	149.0	8.79035e-42	ORF6N domain	N/A
Pfam	UHGV-1415385_19	PF10543	N/A	N/A	ORF6N domain	ORF6N
structural_annotation	UHGV-1415385_19	PF10543,TIGR02681,COG3646	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-1415385_20	658655.HMPREF0988_00895	68.6	0.00000000000562	N/A	N/A
PHROG	UHGV-1415385_21	phrog_229	119.2	2.6e-35	MazG-like pyrophosphatase	other
UniRef90	UHGV-1415385_21	UniRef90_UPI001D02B1F9	275.0	0	nucleoside triphosphate pyrophosphohydrolase family protein	N/A
eggNOG-mapper	UHGV-1415385_21	428125.CLOLEP_01391	103.0	5.13e-27	MazG nucleotide pyrophosphohydrolase domain	N/A
Pfam	UHGV-1415385_21	PF03819	N/A	N/A	MazG nucleotide pyrophosphohydrolase domain	MazG
COG	UHGV-1415385_21	COG1694	N/A	N/A	NTP pyrophosphatase, house-cleaning of non-canonical NTPs	N/A
structural_annotation	UHGV-1415385_21	PF03819,MF_01020,TIGR03188,COG1694	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-1415385_22	411473.RUMCAL_02525	96.3	2.86e-24	N/A	N/A
UniRef90	UHGV-1415385_27	UniRef90_A0A8D9PGN8	92.4	5.74e-23	Acetyl-coA carboxylase zinc finger domain protein	N/A
UniRef90	UHGV-1415385_30	UniRef90_UPI0011072322	83.6	4.5e-18	N/A	N/A
eggNOG-mapper	UHGV-1415385_30	411473.RUMCAL_00360	73.2	0.00000000000000744	N/A	N/A
structural_annotation	UHGV-1415385_30	PF14359,COG3613	N/A	N/A	N/A	N/A
PHROG	UHGV-1415385_31	phrog_38	144.0	9.30462e-43	terminase large subunit	head and packaging
UniRef90	UHGV-1415385_31	UniRef90_A0A8D9PG33	740.0	0	Terminase	N/A
eggNOG-mapper	UHGV-1415385_31	1232453.BAIF02000058_gene1623	423.0	0	TIGRFAM Phage	N/A
COG	UHGV-1415385_31	COG5410	N/A	N/A	N/A	N/A
structural_annotation	UHGV-1415385_31	PF17289,PF02562,MF_04147,NF033889,COG5362,COG5410	N/A	N/A	N/A	N/A
PHROG	UHGV-1415385_32	phrog_36	68.8	9.4e-20	transcriptional regulator	transcription regulation
UniRef90	UHGV-1415385_32	UniRef90_A0A410QFZ6	86.7	5.36e-19	N/A	N/A
eggNOG-mapper	UHGV-1415385_32	994573.T472_0211085	78.2	1.96e-16	sigma factor activity	N/A
COG	UHGV-1415385_32	COG1191	N/A	N/A	DNA-directed RNA polymerase specialized sigma subunit	N/A
structural_annotation	UHGV-1415385_32	PF07374,MF_00674,NF008895,COG1191	N/A	N/A	N/A	N/A
PHROG	UHGV-1415385_33	phrog_64	179.3	0	portal protein	head and packaging
UniRef90	UHGV-1415385_33	UniRef90_A0A173UGW9	937.0	0	Phage portal protein, SPP1 family	N/A
eggNOG-mapper	UHGV-1415385_33	1298920.KI911353_gene2663	454.0	0	Phage portal protein, SPP1 Gp6-like	N/A
Pfam	UHGV-1415385_33	PF05133	N/A	N/A	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
structural_annotation	UHGV-1415385_33	PF05133,MF_04120,TIGR01538,COG5511	N/A	N/A	N/A	N/A
UniRef90	UHGV-1415385_34	UniRef90_R6C0B6	126.0	3.26e-33	Phage capsid scaffolding protein	N/A
PHROG	UHGV-1415385_35	phrog_909	47.8	0.00000000000022	major head protein	head and packaging
eggNOG-mapper	UHGV-1415385_35	1298920.KI911353_gene2661	122.0	1.88e-34	N/A	N/A
PHROG	UHGV-1415385_36	phrog_29	161.7	0	major head protein	head and packaging
UniRef90	UHGV-1415385_36	UniRef90_UPI001D02C54B	680.0	0	major capsid protein	N/A
eggNOG-mapper	UHGV-1415385_36	1298920.KI911353_gene2660	354.0	0	Phage major capsid protein E	N/A
Pfam	UHGV-1415385_36	PF03864	N/A	N/A	Phage major capsid protein E	Phage_cap_E
structural_annotation	UHGV-1415385_36	PF03864,MF_04133,NF041162,COG4653	N/A	N/A	N/A	N/A
UniRef90	UHGV-1415385_37	UniRef90_A0A416G2T8	65.9	0.00000000000188	Rho_N domain-containing protein	N/A
structural_annotation	UHGV-1415385_37	PF21169	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-1415385_38	397290.C810_01402	61.6	0.000000000143	N/A	N/A
PHROG	UHGV-1415385_39	phrog_4105	84.3	1e-24	N/A	unknown function
eggNOG-mapper	UHGV-1415385_39	411459.RUMOBE_00911	160.0	0	N/A	N/A
PHROG	UHGV-1415385_40	phrog_443	54.8	0.0000000000000026	holin	lysis
UniRef90	UHGV-1415385_40	UniRef90_UPI000BA3B743	98.6	9.63e-26	holin	N/A
eggNOG-mapper	UHGV-1415385_40	411490.ANACAC_00704	87.8	2.78e-22	Putative lactococcus lactis phage r1t holin	N/A
Pfam	UHGV-1415385_40	PF16945	N/A	N/A	Putative lactococcus lactis phage r1t holin	Phage_r1t_holin
structural_annotation	UHGV-1415385_40	PF16945	N/A	N/A	N/A	N/A
structural_annotation	UHGV-1415385_41	PF07405,TIGR01563,COG5614	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-1415385_42	1298920.KI911353_gene2654	176.0	0	N/A	N/A
AcrCatalog	UHGV-1415385_42	cluster_24841	92.8	9.82e-26	NA	N/A
structural_annotation	UHGV-1415385_43	PF05657	N/A	N/A	N/A	N/A
UniRef90	UHGV-1415385_44	UniRef90_A0A8D9PGN2	184.0	0	Major tail protein	N/A
structural_annotation	UHGV-1415385_44	PF16463,TIGR02126,COG5437	N/A	N/A	N/A	N/A
PHROG	UHGV-1415385_47	phrog_14030	133.4	1.3e-39	N/A	unknown function
UniRef90	UHGV-1415385_47	UniRef90_A0A3R6ARM6	208.0	0	Peptidoglycan-binding protein	N/A
eggNOG-mapper	UHGV-1415385_47	1235793.C809_02691	173.0	0	N-Acetylmuramoyl-L-alanine amidase	N/A
COG	UHGV-1415385_47	COG3023	N/A	N/A	N-acetyl-anhydromuramyl-L-alanine amidase AmpD	N/A
PHROG	UHGV-1415385_48	phrog_1535	170.4	0	tail length tape measure protein	tail
eggNOG-mapper	UHGV-1415385_48	1211844.CBLM010000016_gene1482	211.0	0	tape measure	N/A
COG	UHGV-1415385_48	COG3941	N/A	N/A	Phage tail tape-measure protein, controls tail length	N/A
structural_annotation	UHGV-1415385_48	PF20155,MF_04138	N/A	N/A	N/A	N/A
PHROG	UHGV-1415385_49	phrog_215	50.5	0.000000000000032	structural protein with Ig domain	head and packaging
UniRef90	UHGV-1415385_49	UniRef90_A0A1G5IID5	81.3	0.0000000000000012	Ig-like domain (Group 2) (Fragment)	N/A
eggNOG-mapper	UHGV-1415385_49	445973.CLOBAR_00420	74.7	0.000000000000217	Bacterial Ig-like domain (group 2)	N/A
Pfam	UHGV-1415385_49	PF02368	N/A	N/A	Bacterial Ig-like domain (group 2)	Big_2
COG	UHGV-1415385_49	COG5492	N/A	N/A	N/A	N/A
structural_annotation	UHGV-1415385_49	PF02368,NF041740	N/A	N/A	N/A	N/A
PHROG	UHGV-1415385_50	phrog_806	65.4	1.1e-18	N/A	unknown function
UniRef90	UHGV-1415385_50	UniRef90_UPI001D08E833	114.0	4.71e-27	N/A	N/A
eggNOG-mapper	UHGV-1415385_50	1235802.C823_04880	110.0	5.54e-27	N/A	N/A
Pfam	UHGV-1415385_50	PF11611	N/A	N/A	N/A	DUF4352
structural_annotation	UHGV-1415385_50	PF11611,PF13828,MF_00791,NF003967,COG2967	N/A	N/A	N/A	N/A
PHROG	UHGV-1415385_51	phrog_130	144.8	5.70328e-43	anti-repressor Ant	transcription regulation
UniRef90	UHGV-1415385_51	UniRef90_UPI0009D7969F	234.0	0	transporter	N/A
eggNOG-mapper	UHGV-1415385_51	1443125.Z962_p0009	203.0	0	BRO family, N-terminal domain	N/A
Pfam	UHGV-1415385_51	PF02498	N/A	N/A	BRO family, N-terminal domain	Bro-N
COG	UHGV-1415385_51	COG3617	N/A	N/A	Prophage antirepressor	N/A
structural_annotation	UHGV-1415385_51	PF02498,COG3617	N/A	N/A	N/A	N/A
PHROG	UHGV-1415385_52	phrog_1194	46.8	0.00000000000038	N/A	unknown function
Pfam	UHGV-1415385_52	PF20458	N/A	N/A	N/A	DUF6711
structural_annotation	UHGV-1415385_52	PF20458,TIGR01633,COG3499	N/A	N/A	N/A	N/A
PHROG	UHGV-1415385_53	phrog_18190	475.6	0	N/A	unknown function
UniRef90	UHGV-1415385_53	UniRef90_A0A173UFM3	1278.0	0	Peptidase S74 domain-containing protein	N/A
eggNOG-mapper	UHGV-1415385_53	397290.C810_05239	293.0	0	N/A	N/A
Pfam	UHGV-1415385_53	PF13884	N/A	N/A	Chaperone of endosialidase	Peptidase_S74
structural_annotation	UHGV-1415385_53	PF05113,NF033848,COG3500	N/A	N/A	N/A	N/A
PHROG	UHGV-1415385_54	phrog_17196	135.1	3.4e-40	kinase	other
eggNOG-mapper	UHGV-1415385_54	483218.BACPEC_01141	184.0	0	N/A	N/A
structural_annotation	UHGV-1415385_54	PF19537,PF13619,COG3536	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-1415385_56	1232452.BAIB02000007_gene1607	80.5	1.29e-17	N/A	N/A
NCBIFam	UHGV-1415385_57	NF040910.1	N/A	N/A	CD1375 family protein	N/A
structural_annotation	UHGV-1415385_57	NF040910	N/A	N/A	N/A	N/A
PHROG	UHGV-1415385_61	phrog_8	55.2	0.0000000000000015	transcriptional regulator	transcription regulation
UniRef90	UHGV-1415385_61	UniRef90_A0A1C5WLU7	117.0	5.86e-32	Helix-turn-helix domain	N/A
eggNOG-mapper	UHGV-1415385_61	411462.DORLON_00819	72.8	0.00000000000000518	Cro/C1-type HTH DNA-binding domain	N/A
COG	UHGV-1415385_61	COG1476	N/A	N/A	DNA-binding transcriptional regulator, XRE-family HTH domain	N/A
structural_annotation	UHGV-1415385_61	PF12844,NF041951,COG3655	N/A	N/A	N/A	N/A
UniRef90	UHGV-1415385_62	UniRef90_A0A3R6TRW8	65.1	0.00000000000118	XRE family transcriptional regulator	N/A
COG	UHGV-1415385_62	COG1476	N/A	N/A	DNA-binding transcriptional regulator, XRE-family HTH domain	N/A
structural_annotation	UHGV-1415385_62	PF01381,NF041951,COG1396	N/A	N/A	N/A	N/A
PHROG	UHGV-1415385_65	phrog_4608	138.5	4.90006e-41	anti-repressor	transcription regulation
UniRef90	UHGV-1415385_65	UniRef90_A0A173RD24	343.0	0	ORF6N domain	N/A
eggNOG-mapper	UHGV-1415385_65	1408823.AXUS01000024_gene2689	147.0	1.59005e-41	ORF6C domain	N/A
Pfam	UHGV-1415385_65	PF10543	N/A	N/A	ORF6N domain	ORF6N
COG	UHGV-1415385_65	COG3646	N/A	N/A	Phage regulatory protein Rha	N/A
KOfam	UHGV-1415385_67	K07741	121.0	2.2e-35	antB; anti-repressor protein	N/A
PHROG	UHGV-1415385_67	phrog_130	241.7	0	anti-repressor Ant	transcription regulation
UniRef90	UHGV-1415385_67	UniRef90_A0A1T5K3B0	310.0	0	Phage antirepressor protein YoqD, KilAC domain	N/A
eggNOG-mapper	UHGV-1415385_67	1123263.AUKY01000072_gene2107	251.0	0	BRO family, N-terminal domain	N/A
Pfam	UHGV-1415385_67	PF02498	N/A	N/A	BRO family, N-terminal domain	Bro-N
Pfam	UHGV-1415385_67	PF03374	N/A	N/A	Phage antirepressor protein KilAC domain	ANT
COG	UHGV-1415385_67	COG3617	N/A	N/A	Prophage antirepressor	N/A
structural_annotation	UHGV-1415385_67	PF03374,PF02498,TIGR02681,COG3645	N/A	N/A	N/A	N/A
PHROG	UHGV-1415385_70	phrog_26861	94.1	2.6e-28	N/A	unknown function
UniRef90	UHGV-1415385_70	UniRef90_A0A173RCS5	343.0	0	Single-stranded DNA-binding protein	N/A
eggNOG-mapper	UHGV-1415385_70	483218.BACPEC_01931	108.0	1.62e-26	Single-strand binding protein family	N/A
Pfam	UHGV-1415385_70	PF00436	N/A	N/A	Single-strand binding protein family	SSB
COG	UHGV-1415385_70	COG0629	N/A	N/A	Single-stranded DNA-binding protein	N/A
structural_annotation	UHGV-1415385_70	PF00436,PF13567,MF_00984,NF004476,COG0629	N/A	N/A	N/A	N/A
COG	UHGV-1415385_71	COG1196	N/A	N/A	Chromosome segregation ATPase Smc	N/A

All viral genomes

ID	Representative?	Length (bps)	% GC Content	CheckV Completeness	geNomad Score
UHGV-1415385	Yes	43,349	40	75	1