vOTU vOTU-098189

vOTU: vOTU-098189

Overview

Genome (FASTA) Annotation Track (GFF) Proteins (FASTA) Protein Annotation (TSV)

Cluster properties
vOTU ID	vOTU-098189
Number of genomes	1
Taxonomy (ICTV)	Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes
Taxonomy (UHGV)	vFAM-00005 → vSUBFAM-00633 → vGENUS-01737 → vOTU-098189
Host lineage	Bacteria → Firmicutes_A → Clostridia → Oscillospirales → Oscillospiraceae → Lawsonibacter
Host range breadth	Genus
Lifestyle	temperate (evidence: integrase)

Representative genome
Genome ID	UHGV-0095249
Biosample ID	SAMEA3708579
Genome length (bp)	19,954 bps
CheckV completeness	53.50% (Medium-quality)
CDS count	39
CDS density	89.23%
tRNA count	0
Integrase	Yes
Viral confidence	Confident

Host assignment details
Assignment method	PHIST
CRISPR-predicted host lineage	Bacteria → Firmicutes_A → Clostridia → Oscillospirales → Oscillospiraceae	Total connections	11	Host agreement	100
PHIST-predicted host lineage	Bacteria → Firmicutes_A → Clostridia → Oscillospirales → Oscillospiraceae → Lawsonibacter	Total connections	35	Host agreement	94.29

Representative genome content

Select to view: Genome Viewer Functional Annotation

Genome view (completeness: 53.5)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
KOfam	UHGV-0095249_1	K14059	184.2	0	int; integrase	N/A
PHROG	UHGV-0095249_1	phrog_1	173.7	0	integrase	integration and excision
UniRef90	UHGV-0095249_1	UniRef90_A0A1Y4RLI7	440.0	0	Tyr recombinase domain-containing protein	N/A
eggNOG-mapper	UHGV-0095249_1	1321814.HMPREF9089_00905	158.0	1.61009e-42	Phage integrase, N-terminal SAM-like domain	N/A
Pfam	UHGV-0095249_1	PF14659	N/A	N/A	Phage integrase, N-terminal SAM-like domain	Phage_int_SAM_3
Pfam	UHGV-0095249_1	PF00589	N/A	N/A	Phage integrase family	Phage_integrase
COG	UHGV-0095249_1	COG0582	N/A	N/A	Integrase/recombinase, includes phage integrase	N/A
structural_annotation	UHGV-0095249_1	PF00589,PF14659,MF_01808,TIGR02224,COG4974	N/A	N/A	N/A	N/A
UniRef90	UHGV-0095249_2	UniRef90_UPI000829D46F	90.5	3.57e-17	N/A	N/A
eggNOG-mapper	UHGV-0095249_2	1232453.BAIF02000014_gene3186	80.5	7.73e-16	N/A	N/A
PHROG	UHGV-0095249_3	phrog_38135	68.5	9.2e-20	N/A	unknown function
UniRef90	UHGV-0095249_3	UniRef90_UPI0018F46365	79.3	0.00000000000000194	N/A	N/A
eggNOG-mapper	UHGV-0095249_3	1408303.JNJJ01000047_gene2868	72.8	0.000000000000873	N/A	N/A
Pfam	UHGV-0095249_3	PF14020	N/A	N/A	N/A	DUF4236
KOfam	UHGV-0095249_4	K01356	112.4	7.6e-33	lexA; repressor LexA [EC:3.4.21.88]	N/A
PHROG	UHGV-0095249_4	phrog_4	59.9	6.9e-17	transcriptional repressor	transcription regulation
UniRef90	UHGV-0095249_4	UniRef90_UPI0013DDB973	151.0	2.66247e-44	XRE family transcriptional regulator	N/A
eggNOG-mapper	UHGV-0095249_4	349161.Dred_1183	106.0	2.2e-27	Represses a number of genes involved in the response to DNA damage (SOS response), including recA and lexA. In the presence of single-stranded DNA, RecA interacts with LexA causing an autocatalytic cleavage which disrupts the DNA-binding part of LexA, leading to derepression of the SOS regulon and eventually DNA repair	N/A
Pfam	UHGV-0095249_4	PF00717	N/A	N/A	Peptidase S24-like	Peptidase_S24
COG	UHGV-0095249_4	COG1974	N/A	N/A	SOS-response transcriptional repressor LexA (RecA-mediated autopeptidase)	N/A
UniRef90	UHGV-0095249_5	UniRef90_A0A7X5E0G0	101.0	8.14e-27	XRE family transcriptional regulator	N/A
eggNOG-mapper	UHGV-0095249_5	246199.CUS_5910	77.4	3.89e-18	N/A	N/A
Pfam	UHGV-0095249_5	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
structural_annotation	UHGV-0095249_5	PF21291,NF041951,COG1476	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0095249_7	PF12728,NF040990,COG3311	N/A	N/A	N/A	N/A
PHROG	UHGV-0095249_11	phrog_270	134.9	7.80001e-40	replication initiation protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0095249_11	UniRef90_UPI001F170B82	402.0	0	helix-turn-helix domain-containing protein	N/A
eggNOG-mapper	UHGV-0095249_11	742738.HMPREF9460_00851	169.0	0	Helix-turn-helix domain	N/A
Pfam	UHGV-0095249_11	PF13730	N/A	N/A	Helix-turn-helix domain	HTH_36
COG	UHGV-0095249_11	COG3935	N/A	N/A	DNA replication protein DnaD	N/A
structural_annotation	UHGV-0095249_11	PF13730,MF_01909,TIGR04176,COG3355	N/A	N/A	N/A	N/A
KOfam	UHGV-0095249_12	K02314	388.6	0	dnaB; replicative DNA helicase [EC:5.6.2.3]	N/A
PHROG	UHGV-0095249_12	phrog_19	282.1	0	DnaB-like replicative helicase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0095249_12	UniRef90_UPI001875E60F	479.0	0	replicative DNA helicase	N/A
eggNOG-mapper	UHGV-0095249_12	742738.HMPREF9460_00852	383.0	0	Participates in initiation and elongation during chromosome replication	N/A
Pfam	UHGV-0095249_12	PF00772	N/A	N/A	DnaB-like helicase N terminal domain	DnaB
Pfam	UHGV-0095249_12	PF03796	N/A	N/A	DnaB-like helicase C terminal domain	DnaB_C
COG	UHGV-0095249_12	COG0305	N/A	N/A	Replicative DNA helicase	N/A
structural_annotation	UHGV-0095249_12	PF03796,PF00772,MF_04155,TIGR00665,COG0305	N/A	N/A	N/A	N/A
KOfam	UHGV-0095249_13	K03496	190.5	0	parA, soj; chromosome partitioning protein	N/A
PHROG	UHGV-0095249_13	phrog_164	161.3	0	ParA-like partition protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0095249_13	UniRef90_UPI001F3C1DB2	278.0	0	ParA family protein	N/A
eggNOG-mapper	UHGV-0095249_13	742738.HMPREF9460_00854	231.0	0	4Fe-4S iron sulfur cluster binding proteins, NifH/frxC family	N/A
Pfam	UHGV-0095249_13	PF13614	N/A	N/A	AAA domain	AAA_31
COG	UHGV-0095249_13	COG1192	N/A	N/A	ParA-like ATPase involved in chromosome/plasmid partitioning or cellulose biosynthesis protein BcsQ	N/A
structural_annotation	UHGV-0095249_13	PF13614,MF_00533,TIGR03453,COG1192	N/A	N/A	N/A	N/A
PHROG	UHGV-0095249_14	phrog_15609	219.9	0	N/A	unknown function
eggNOG-mapper	UHGV-0095249_14	1226322.HMPREF1545_00098	187.0	0	N/A	N/A
Pfam	UHGV-0095249_14	PF11300	N/A	N/A	N/A	DUF3102
COG	UHGV-0095249_14	COG2433	N/A	N/A	Possible nuclease of RNase H fold, RuvC/YqgF family	N/A
KOfam	UHGV-0095249_16	K03111	140.4	1.99993e-41	ssb; single-strand DNA-binding protein	N/A
PHROG	UHGV-0095249_16	phrog_44	133.8	1.3e-39	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0095249_16	UniRef90_UPI0012489F18	220.0	0	single-stranded DNA-binding protein	N/A
eggNOG-mapper	UHGV-0095249_16	411467.BACCAP_02389	170.0	0	Single-strand binding protein family	N/A
Pfam	UHGV-0095249_16	PF00436	N/A	N/A	Single-strand binding protein family	SSB
NCBIFam	UHGV-0095249_16	TIGR00621.2	N/A	N/A	single-stranded DNA-binding protein	N/A
COG	UHGV-0095249_16	COG0629	N/A	N/A	Single-stranded DNA-binding protein	N/A
HAMAP	UHGV-0095249_16	MF_00984	N/A	N/A	Single-stranded DNA-binding protein	N/A
structural_annotation	UHGV-0095249_16	PF00436,MF_00984,NF005241,COG0629	N/A	N/A	N/A	N/A
KOfam	UHGV-0095249_18	K23779	50.1	0.000000000000062	sutR; XRE family transcriptional regulator, regulator of sulfur utilization	N/A
PHROG	UHGV-0095249_18	phrog_8	47.5	0.00000000000039	transcriptional regulator	transcription regulation
UniRef90	UHGV-0095249_18	UniRef90_A0A0Q9TXC4	51.6	0.00000177	HTH cro/C1-type domain-containing protein	N/A
eggNOG-mapper	UHGV-0095249_18	1101188.KI912156_gene4173	53.1	0.000000299	Cupin domain	N/A
Pfam	UHGV-0095249_18	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
COG	UHGV-0095249_18	COG1396	N/A	N/A	Transcriptional regulator, contains XRE-family HTH domain	N/A
PHROG	UHGV-0095249_19	phrog_31029	137.5	2.59997e-41	N/A	unknown function
PHROG	UHGV-0095249_21	phrog_22543	40.6	0.000000000046	N/A	unknown function
PHROG	UHGV-0095249_22	phrog_774	61.5	1.8e-17	N/A	unknown function
eggNOG-mapper	UHGV-0095249_22	397290.C810_05225	75.5	1.32e-16	N/A	N/A
structural_annotation	UHGV-0095249_29	PF19070	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0095249_31	NF041677	N/A	N/A	N/A	N/A
PHROG	UHGV-0095249_32	phrog_3584	176.7	0	replication initiation protein	DNA, RNA and nucleotide metabolism
eggNOG-mapper	UHGV-0095249_32	1203606.HMPREF1526_00985	219.0	0	N/A	N/A
structural_annotation	UHGV-0095249_32	PF01446,NF041486	N/A	N/A	N/A	N/A
UniRef90	UHGV-0095249_33	UniRef90_UPI001F309B22	100.0	2.33e-26	cysteine-rich KTR domain-containing protein	N/A
eggNOG-mapper	UHGV-0095249_33	1226322.HMPREF1545_00110	58.5	0.0000000000994	Cysteine-rich KTR	N/A
Pfam	UHGV-0095249_33	PF14205	N/A	N/A	Cysteine-rich KTR	Cys_rich_KTR
structural_annotation	UHGV-0095249_33	PF14205,COG4416	N/A	N/A	N/A	N/A
PHROG	UHGV-0095249_34	phrog_144	88.4	8.5e-26	HNH endonuclease	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0095249_34	UniRef90_UPI001031C755	210.0	0	HNH endonuclease	N/A
eggNOG-mapper	UHGV-0095249_34	742738.HMPREF9460_00869	182.0	0	HNH endonuclease	N/A
COG	UHGV-0095249_34	COG1403	N/A	N/A	5-methylcytosine-specific restriction endonuclease McrA	N/A
structural_annotation	UHGV-0095249_34	PF01844,COG1403	N/A	N/A	N/A	N/A
PHROG	UHGV-0095249_35	phrog_83	72.8	5.9e-21	terminase small subunit	head and packaging
UniRef90	UHGV-0095249_35	UniRef90_UPI001F1C7CBA	277.0	0	phage terminase small subunit P27 family	N/A
eggNOG-mapper	UHGV-0095249_35	742738.HMPREF9460_00871	133.0	1.63e-37	phage terminase, small subunit	N/A
Pfam	UHGV-0095249_35	PF05119	N/A	N/A	Phage terminase, small subunit	Terminase_4
NCBIFam	UHGV-0095249_35	TIGR01558.1	N/A	N/A	phage terminase small subunit P27 family	N/A
COG	UHGV-0095249_35	COG3747	N/A	N/A	Phage terminase, small subunit	N/A
structural_annotation	UHGV-0095249_35	PF05119,TIGR01558,COG3747	N/A	N/A	N/A	N/A
PHROG	UHGV-0095249_36	phrog_9	332.1	0	terminase large subunit	head and packaging
UniRef90	UHGV-0095249_36	UniRef90_UPI001245DB37	1059.0	0	terminase large subunit	N/A
eggNOG-mapper	UHGV-0095249_36	742738.HMPREF9460_00872	864.0	0	Phage Terminase	N/A
Pfam	UHGV-0095249_36	PF03354	N/A	N/A	Terminase large subunit, ATPase domain	TerL_ATPase
Pfam	UHGV-0095249_36	PF20441	N/A	N/A	Terminase large subunit, endonuclease domain	TerL_nuclease
COG	UHGV-0095249_36	COG4626	N/A	N/A	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	N/A
structural_annotation	UHGV-0095249_36	PF20441,PF03354,MF_04145,TIGR01547,COG4626	N/A	N/A	N/A	N/A
PHROG	UHGV-0095249_39	phrog_12	207.0	0	portal protein	head and packaging
UniRef90	UHGV-0095249_39	UniRef90_UPI000B38DE26	566.0	0	phage portal protein	N/A
eggNOG-mapper	UHGV-0095249_39	1501230.ET33_02290	183.0	0	Phage portal protein	N/A
Pfam	UHGV-0095249_39	PF04860	N/A	N/A	Phage portal protein	Phage_portal
NCBIFam	UHGV-0095249_39	TIGR01537.1	N/A	N/A	phage portal protein	N/A
COG	UHGV-0095249_39	COG4695	N/A	N/A	Phage portal protein BeeE	N/A

All viral genomes

ID	Representative?	Length (bps)	% GC Content	CheckV Completeness	geNomad Score
UHGV-0095249	Yes	19,954	60	54	1