vOTU vOTU-098350

vOTU: vOTU-098350

Overview

Genome (FASTA) Annotation Track (GFF) Proteins (FASTA) Protein Annotation (TSV)

Cluster properties
vOTU ID	vOTU-098350
Number of genomes	1
Taxonomy (ICTV)	Bacteria → Firmicutes_A → Clostridia → Oscillospirales → Oscillospiraceae → CAG-83
Taxonomy (UHGV)	vFAM-00006 → vSUBFAM-00227 → vGENUS-00348 → vOTU-098350
Host lineage	Bacteria → Firmicutes_A → Clostridia → Oscillospirales → Oscillospiraceae → CAG-83 → CAG-83 sp000435975
Host range breadth	Species
Lifestyle	temperate (Evidence: BACPHLIP)

Representative genome
Genome ID	UHGV-0040249
Biosample ID	SAMEA4969126
Genome length (bp)	34,782 bps
CheckV completeness	77.89% (Medium-quality)
CDS count	51
CDS density	88.73%
tRNA count	1
Integrase	No
Viral confidence	Confident

Host assignment details
Assignment method	CRISPR
CRISPR-predicted host lineage	Bacteria → Firmicutes_A → Clostridia → Oscillospirales → Oscillospiraceae → CAG-83 → CAG-83 sp000435975	Total connections	505	Host agreement	77.43
PHIST-predicted host lineage	Bacteria → Firmicutes_A → Clostridia → Oscillospirales → Oscillospiraceae → CAG-83	Total connections	3	Host agreement	100

Representative genome content

Select to view: Genome Viewer Functional Annotation

Genome view (completeness: 77.89)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
PHROG	UHGV-0040249_1	phrog_4433	166.5	0	N/A	unknown function
UniRef90	UHGV-0040249_1	UniRef90_A0A6M5C839	76.6	0.0000000000000846	Putative ADP-ribosyltransferase	N/A
eggNOG-mapper	UHGV-0040249_1	573061.Clocel_3578	113.0	8.02e-27	regulation of DNA-templated transcription, elongation	N/A
Pfam	UHGV-0040249_1	PF01391	N/A	N/A	Collagen triple helix repeat (20 copies)	Collagen
COG	UHGV-0040249_1	COG5164	N/A	N/A	Transcription elongation factor SPT5	N/A
UniRef90	UHGV-0040249_2	UniRef90_A0A8D9PDM8	67.4	0.000000000000201	Pyocin activator protein	N/A
KOfam	UHGV-0040249_3	K22300	46.9	0.00000000000052	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	N/A
UniRef90	UHGV-0040249_3	UniRef90_A0A3D3Y6C1	68.6	0.0000000000000553	XRE family transcriptional regulator	N/A
eggNOG-mapper	UHGV-0040249_3	796942.HMPREF9623_00878	55.1	0.0000000494	N/A	N/A
Pfam	UHGV-0040249_3	PF13560	N/A	N/A	Helix-turn-helix domain	HTH_31
COG	UHGV-0040249_3	COG1476	N/A	N/A	DNA-binding transcriptional regulator, XRE-family HTH domain	N/A
structural_annotation	UHGV-0040249_3	PF01381,NF041951,COG1476	N/A	N/A	N/A	N/A
UniRef90	UHGV-0040249_4	UniRef90_UPI00196819D3	53.9	0.000000631	helix-turn-helix domain-containing protein	N/A
structural_annotation	UHGV-0040249_4	PF12844,MF_00535,NF007257,COG1476	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0040249_5	COG1321	N/A	N/A	N/A	N/A
Pfam	UHGV-0040249_8	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
COG	UHGV-0040249_8	COG1396	N/A	N/A	Transcriptional regulator, contains XRE-family HTH domain	N/A
structural_annotation	UHGV-0040249_8	PF12844,MF_00535,NF041951,COG3655	N/A	N/A	N/A	N/A
KOfam	UHGV-0040249_9	K14059	146.7	2.39622e-43	int; integrase	N/A
PHROG	UHGV-0040249_9	phrog_1	157.0	0	integrase	integration and excision
UniRef90	UHGV-0040249_9	UniRef90_A0A1C5W824	536.0	0	Integrase	N/A
eggNOG-mapper	UHGV-0040249_9	693746.OBV_41260	300.0	0	Belongs to the 'phage' integrase family	N/A
Pfam	UHGV-0040249_9	PF00589	N/A	N/A	Phage integrase family	Phage_integrase
COG	UHGV-0040249_9	COG4974	N/A	N/A	Site-specific recombinase XerD	N/A
structural_annotation	UHGV-0040249_9	PF00589,MF_01807,TIGR02224,COG4973	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0040249_11	1408437.JNJN01000043_gene801	67.8	0.00000000000945	N/A	N/A
structural_annotation	UHGV-0040249_12	PF18573,NF033147	N/A	N/A	N/A	N/A
PHROG	UHGV-0040249_13	phrog_16490	53.2	0.0000000000000063	N/A	unknown function
eggNOG-mapper	UHGV-0040249_13	397290.C810_05212	60.1	0.0000000358	N/A	N/A
KOfam	UHGV-0040249_17	K22300	59.9	5.4e-17	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	N/A
PHROG	UHGV-0040249_17	phrog_8	44.9	0.0000000000027	transcriptional regulator	transcription regulation
UniRef90	UHGV-0040249_17	UniRef90_A0A502JGY5	53.5	0.00000167	XRE family transcriptional regulator	N/A
eggNOG-mapper	UHGV-0040249_17	1297617.JPJD01000051_gene1860	56.6	0.0000000174	DNA-binding helix-turn-helix protein	N/A
Pfam	UHGV-0040249_17	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
COG	UHGV-0040249_17	COG1396	N/A	N/A	Transcriptional regulator, contains XRE-family HTH domain	N/A
KOfam	UHGV-0040249_18	K01448	51.9	0.000000000000011	amiABC; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]	N/A
PHROG	UHGV-0040249_18	phrog_435	88.4	1e-25	endolysin	lysis
UniRef90	UHGV-0040249_18	UniRef90_UPI001BF1661D	446.0	0	N-acetylmuramoyl-L-alanine amidase	N/A
eggNOG-mapper	UHGV-0040249_18	994573.T472_0210960	145.0	1.95e-40	n-acetylmuramoyl-l-alanine amidase	N/A
Pfam	UHGV-0040249_18	PF01520	N/A	N/A	N-acetylmuramoyl-L-alanine amidase	Amidase_3
Pfam	UHGV-0040249_18	PF05036	N/A	N/A	SPOR domain	SPOR
COG	UHGV-0040249_18	COG0860	N/A	N/A	N-acetylmuramoyl-L-alanine amidase	N/A
structural_annotation	UHGV-0040249_18	PF01520,MF_00562,TIGR02883,COG0860	N/A	N/A	N/A	N/A
PHROG	UHGV-0040249_19	phrog_199	78.8	5.8e-23	holin	lysis
UniRef90	UHGV-0040249_19	UniRef90_UPI001BEFC888	299.0	0	Phage holin family protein	N/A
eggNOG-mapper	UHGV-0040249_19	1160721.RBI_I01565	136.0	4.26e-39	Bacteriophage holin family	N/A
Pfam	UHGV-0040249_19	PF05105	N/A	N/A	Bacteriophage holin family	Phage_holin_4_1
NCBIFam	UHGV-0040249_19	TIGR01593.1	N/A	N/A	toxin secretion/phage lysis holin	N/A
COG	UHGV-0040249_19	COG4824	N/A	N/A	Phage-related holin (Lysis protein)	N/A
structural_annotation	UHGV-0040249_19	PF05105,TIGR01593,COG4824	N/A	N/A	N/A	N/A
KOfam	UHGV-0040249_20	K01104	51.8	0.0000000000000086	E3.1.3.48; protein-tyrosine phosphatase [EC:3.1.3.48]	N/A
UniRef90	UHGV-0040249_20	UniRef90_UPI001BF10870	1140.0	0	Tyrosine-protein phosphatase	N/A
eggNOG-mapper	UHGV-0040249_20	909613.UO65_2741	75.1	0.00000000000243	Tyrosine phosphatase family	N/A
Pfam	UHGV-0040249_20	PF13350	N/A	N/A	Tyrosine phosphatase family	Y_phosphatase3
COG	UHGV-0040249_20	COG2365	N/A	N/A	Protein tyrosine/serine phosphatase Oca4	N/A
PHROG	UHGV-0040249_22	phrog_27545	83.9	1.8e-24	N/A	unknown function
UniRef90	UHGV-0040249_22	UniRef90_A0A3D1XGA4	203.0	0	Chitin-binding type-3 domain-containing protein	N/A
eggNOG-mapper	UHGV-0040249_22	478749.BRYFOR_07638	70.9	0.000000000000376	N/A	N/A
PHROG	UHGV-0040249_24	phrog_372	224.3	0	tail protein	tail
UniRef90	UHGV-0040249_24	UniRef90_UPI001373A0FD	249.0	0	N/A	N/A
eggNOG-mapper	UHGV-0040249_24	1235802.C823_05263	216.0	0	N/A	N/A
Pfam	UHGV-0040249_24	PF05895	N/A	N/A	N/A	DUF859
COG	UHGV-0040249_24	COG4675	N/A	N/A	Phage tail collar domain	N/A
structural_annotation	UHGV-0040249_24	PF05895,MF_04116,NF010681,COG3401,COG4675	N/A	N/A	N/A	N/A
PHROG	UHGV-0040249_25	phrog_6616	104.1	1.4e-31	tail protein	tail
UniRef90	UHGV-0040249_25	UniRef90_R5GWP5	73.9	0.000000000271	KID repeat family protein	N/A
eggNOG-mapper	UHGV-0040249_25	469596.HMPREF9488_01318	290.0	0	N/A	N/A
structural_annotation	UHGV-0040249_25	PF05113,NF033848,COG3500	N/A	N/A	N/A	N/A
PHROG	UHGV-0040249_26	phrog_1194	119.0	2e-35	N/A	unknown function
UniRef90	UHGV-0040249_26	UniRef90_A0A0B3VTI7	104.0	1.11e-26	N/A	N/A
eggNOG-mapper	UHGV-0040249_26	1414720.CBYM010000002_gene561	111.0	4.76e-30	N/A	N/A
Pfam	UHGV-0040249_26	PF20458	N/A	N/A	N/A	DUF6711
structural_annotation	UHGV-0040249_26	PF20458,TIGR02126,COG3499	N/A	N/A	N/A	N/A
PHROG	UHGV-0040249_27	phrog_1535	141.7	0	tail length tape measure protein	tail
UniRef90	UHGV-0040249_27	UniRef90_A0A1C6L0H4	572.0	0	Phage-related protein	N/A
eggNOG-mapper	UHGV-0040249_27	1121866.AUGK01000003_gene1437	287.0	0	phage tail tape measure protein	N/A
COG	UHGV-0040249_27	COG1280	N/A	N/A	Threonine/homoserine/homoserine lactone efflux protein	N/A
structural_annotation	UHGV-0040249_27	PF20155,TIGR01760,COG3941	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0040249_28	1211844.CBLM010000023_gene987	53.5	0.0000000989	N/A	N/A
UniRef90	UHGV-0040249_29	UniRef90_UPI00164D364F	162.0	0	N/A	N/A
eggNOG-mapper	UHGV-0040249_29	469596.HMPREF9488_01311	82.0	8.61e-19	N/A	N/A
Pfam	UHGV-0040249_29	PF16478	N/A	N/A	N/A	DUF5055
structural_annotation	UHGV-0040249_29	PF16478	N/A	N/A	N/A	N/A
PHROG	UHGV-0040249_30	phrog_158	56.7	4.9e-16	major tail protein	tail
UniRef90	UHGV-0040249_30	UniRef90_UPI00164D954A	202.0	0	phage tail protein	N/A
eggNOG-mapper	UHGV-0040249_30	1232453.BAIF02000058_gene1634	103.0	1.94e-26	N/A	N/A
Pfam	UHGV-0040249_30	PF08813	N/A	N/A	Phage tail tube protein, TTP	Phage_tail_3
structural_annotation	UHGV-0040249_30	PF16463,TIGR02241,COG5437	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0040249_31	PF06141,TIGR02367,COG3167	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0040249_32	1298920.KI911353_gene2654	55.8	0.000000268	N/A	N/A
eggNOG-mapper	UHGV-0040249_33	1121866.AUGK01000003_gene1432	72.4	0.0000000000000156	N/A	N/A
UniRef90	UHGV-0040249_34	UniRef90_UPI001898B4B4	142.0	7.66931e-42	phage head-tail connector protein	N/A
eggNOG-mapper	UHGV-0040249_34	1298920.KI911353_gene2658	59.7	0.000000000346	N/A	N/A
Pfam	UHGV-0040249_34	PF05135	N/A	N/A	Phage gp6-like head-tail connector protein	Phage_connect_1
structural_annotation	UHGV-0040249_34	TIGR01560	N/A	N/A	N/A	N/A
PHROG	UHGV-0040249_35	phrog_1328	136.1	2e-40	major head protein	head and packaging
UniRef90	UHGV-0040249_35	UniRef90_UPI00164DD2D5	589.0	0	N/A	N/A
eggNOG-mapper	UHGV-0040249_35	665956.HMPREF1032_03619	234.0	0	N/A	N/A
Pfam	UHGV-0040249_35	PF17236	N/A	N/A	N/A	DUF5309
structural_annotation	UHGV-0040249_35	PF17236,MF_04119,NF041162,COG4653	N/A	N/A	N/A	N/A
PHROG	UHGV-0040249_37	phrog_64	229.0	0	portal protein	head and packaging
UniRef90	UHGV-0040249_37	UniRef90_A0A6I2QXE1	687.0	0	Phage portal protein	N/A
eggNOG-mapper	UHGV-0040249_37	1123263.AUKY01000015_gene1609	410.0	0	Phage portal protein, SPP1 Gp6-like	N/A
Pfam	UHGV-0040249_37	PF05133	N/A	N/A	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
structural_annotation	UHGV-0040249_37	PF05133,MF_04120,TIGR01538,COG5511	N/A	N/A	N/A	N/A
PHROG	UHGV-0040249_38	phrog_38	157.5	0	terminase large subunit	head and packaging
UniRef90	UHGV-0040249_38	UniRef90_A0A6I2QXZ5	896.0	0	Phage terminase large subunit	N/A
eggNOG-mapper	UHGV-0040249_38	1298920.KI911353_gene2682	304.0	0	TIGRFAM Phage	N/A
NCBIFam	UHGV-0040249_38	TIGR01630.1	N/A	N/A	phage terminase large subunit	N/A
COG	UHGV-0040249_38	COG5410	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0040249_38	PF17289,PF02562,MF_04147,NF033889,COG5362,COG5410	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0040249_39	PF19190,MF_00791,NF003967,COG2967	N/A	N/A	N/A	N/A
KOfam	UHGV-0040249_40	K14060	105.3	7.5e-31	pinR; putative DNA-invertase from lambdoid prophage Rac	N/A
PHROG	UHGV-0040249_40	phrog_125	162.1	0	DNA invertase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0040249_40	UniRef90_A0A810Q558	266.0	0	DNA recombinase	N/A
eggNOG-mapper	UHGV-0040249_40	1232453.BAIF02000120_gene129	210.0	0	Resolvase, N terminal domain	N/A
Pfam	UHGV-0040249_40	PF00239	N/A	N/A	Resolvase, N terminal domain	Resolvase
COG	UHGV-0040249_40	COG1961	N/A	N/A	Site-specific DNA recombinase SpoIVCA/DNA invertase PinE	N/A
structural_annotation	UHGV-0040249_40	PF00239,PF02796,NF009949,COG1961	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0040249_41	1232436.CAPF01000086_gene855	58.5	0.0000000752	N/A	N/A
PHROG	UHGV-0040249_42	phrog_434	51.0	0.000000000000022	RecE-like recombination exonuclease	DNA, RNA and nucleotide metabolism
eggNOG-mapper	UHGV-0040249_42	1408437.JNJN01000010_gene1241	91.7	4.15e-23	N/A	N/A
PHROG	UHGV-0040249_43	phrog_606	47.0	0.00000000000032	terminase small subunit	head and packaging
UniRef90	UHGV-0040249_43	UniRef90_UPI001D07B715	217.0	0	DNA-packaging protein	N/A
eggNOG-mapper	UHGV-0040249_45	693746.OBV_18010	129.0	4.94e-36	N/A	N/A
structural_annotation	UHGV-0040249_45	TIGR01636	N/A	N/A	N/A	N/A
UniRef90	UHGV-0040249_49	UniRef90_A0A8D9PDT5	57.4	0.0000000155	Hydrogenase/urease nickel incorporation protein	N/A

All viral genomes

ID	Representative?	Length (bps)	% GC Content	CheckV Completeness	geNomad Score
UHGV-0040249	Yes	34,782	54	78	1