vOTU vOTU-098655

vOTU: vOTU-098655

Overview

Genome (FASTA) Annotation Track (GFF) Proteins (FASTA) Protein Annotation (TSV)

Cluster properties
vOTU ID	vOTU-098655
Number of genomes	1
Taxonomy (ICTV)	Bacteria → Firmicutes_A → Clostridia → Oscillospirales → Oscillospiraceae
Taxonomy (UHGV)	vFAM-00005 → vSUBFAM-00317 → vGENUS-00274 → vOTU-098655
Host lineage	Bacteria → Firmicutes_A → Clostridia → Oscillospirales → Oscillospiraceae → Limivicinus
Host range breadth	Genus
Lifestyle	lytic (Evidence: BACPHLIP)

Representative genome
Genome ID	UHGV-0021334
Biosample ID	SAMEA4765911
Genome length (bp)	20,335 bps
CheckV completeness	56.14% (Medium-quality)
CDS count	32
CDS density	96.57%
tRNA count	0
Integrase	No
Viral confidence	Confident

Host assignment details
Assignment method	CRISPR
CRISPR-predicted host lineage	Bacteria → Firmicutes_A → Clostridia → Oscillospirales → Oscillospiraceae → Limivicinus	Total connections	33	Host agreement	100
PHIST-predicted host lineage	Bacteria → Firmicutes_A → Clostridia → Oscillospirales → Oscillospiraceae	Total connections	4	Host agreement	100

Representative genome content

Select to view: Genome Viewer Functional Annotation

Genome view (completeness: 56.14)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
structural_annotation	UHGV-0021334_1	PF18573,NF033147	N/A	N/A	N/A	N/A
PHROG	UHGV-0021334_3	phrog_22984	47.5	0.00000000000031	N/A	unknown function
structural_annotation	UHGV-0021334_4	PF20477,NF033819	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0021334_6	NF010256	N/A	N/A	N/A	N/A
PHROG	UHGV-0021334_8	phrog_1129	67.9	1.1e-19	holin	lysis
UniRef90	UHGV-0021334_8	UniRef90_UPI00189DD88C	124.0	1.71e-35	phage holin family protein	N/A
eggNOG-mapper	UHGV-0021334_8	1226322.HMPREF1545_00069	127.0	2.53e-37	Phage holin family Hol44, in holin superfamily V	N/A
Pfam	UHGV-0021334_8	PF16079	N/A	N/A	Phage holin family Hol44, in holin superfamily V	Phage_holin_5_2
structural_annotation	UHGV-0021334_8	PF06946	N/A	N/A	N/A	N/A
PHROG	UHGV-0021334_9	phrog_1863	52.3	0.0000000000000037	N/A	unknown function
eggNOG-mapper	UHGV-0021334_9	1226322.HMPREF1545_04027	70.9	0.00000000000000388	N/A	N/A
PHROG	UHGV-0021334_10	phrog_14030	164.2	0	N/A	unknown function
UniRef90	UHGV-0021334_10	UniRef90_A0A173XSJ1	196.0	0	Autolytic lysozyme	N/A
eggNOG-mapper	UHGV-0021334_10	33035.JPJF01000093_gene2240	189.0	0	NlpC/P60 family	N/A
Pfam	UHGV-0021334_10	PF00877	N/A	N/A	NlpC/P60 family	NLPC_P60
Pfam	UHGV-0021334_10	PF01471	N/A	N/A	Putative peptidoglycan binding domain	PG_binding_1
COG	UHGV-0021334_10	COG0791	N/A	N/A	Cell wall-associated hydrolase, NlpC_P60 family	N/A
structural_annotation	UHGV-0021334_10	PF01471,PF05382,NF038080,NF033742,COG3409,COG0791	N/A	N/A	N/A	N/A
PHROG	UHGV-0021334_11	phrog_27545	84.4	1.4e-24	N/A	unknown function
eggNOG-mapper	UHGV-0021334_11	1122971.BAME01000151_gene6566	96.3	1.03e-22	N/A	N/A
eggNOG-mapper	UHGV-0021334_13	742733.HMPREF9469_05009	61.6	0.0000000109	N/A	N/A
structural_annotation	UHGV-0021334_13	PF07210,TIGR03000	N/A	N/A	N/A	N/A
PHROG	UHGV-0021334_14	phrog_13589	171.4	0	N/A	unknown function
eggNOG-mapper	UHGV-0021334_14	742733.HMPREF9469_05009	229.0	0	N/A	N/A
structural_annotation	UHGV-0021334_16	PF10651,NF038186	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0021334_17	PF18614,MF_00085,NF003082,COG0361	N/A	N/A	N/A	N/A
PHROG	UHGV-0021334_18	phrog_26795	119.0	2.7e-35	N/A	unknown function
eggNOG-mapper	UHGV-0021334_18	796940.HMPREF9628_00133	87.8	1.13e-16	N/A	N/A
structural_annotation	UHGV-0021334_18	PF14594,NF033848,COG4379	N/A	N/A	N/A	N/A
PHROG	UHGV-0021334_19	phrog_37549	57.3	5.1e-22	virion structural protein	head and packaging
UniRef90	UHGV-0021334_19	UniRef90_A0A3D0W045	214.0	0	Fibronectin type-III domain-containing protein	N/A
eggNOG-mapper	UHGV-0021334_19	1161901.I1TLF2_9CAUD	89.0	0.00000000000000264	N/A	N/A
structural_annotation	UHGV-0021334_19	PF02010,PF06848,PF19266,MF_04116,NF033679,NF032891,TIGR01633,TIGR04488,COG3401,COG3499	N/A	N/A	N/A	N/A
PHROG	UHGV-0021334_20	phrog_33680	112.0	2.8e-33	N/A	unknown function
UniRef90	UHGV-0021334_20	UniRef90_UPI00098F054B	216.0	0	phage tail protein	N/A
eggNOG-mapper	UHGV-0021334_20	1408415.JHXL01000001_gene400	199.0	0	phage tail tape measure protein	N/A
COG	UHGV-0021334_20	COG5280	N/A	N/A	Phage-related minor tail protein	N/A
structural_annotation	UHGV-0021334_20	TIGR01760,COG5280	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0021334_21	PF11836	N/A	N/A	N/A	N/A
PHROG	UHGV-0021334_22	phrog_88	40.4	0.000000000038	major tail protein	tail
COG	UHGV-0021334_22	COG5492	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0021334_22	PF06488,TIGR01603,COG3498	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0021334_23	1203606.HMPREF1526_00974	92.8	6.06e-22	N/A	N/A
structural_annotation	UHGV-0021334_23	TIGR01725	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0021334_24	1203606.HMPREF1526_00975	66.6	0.00000000000123	N/A	N/A
structural_annotation	UHGV-0021334_24	PF05657	N/A	N/A	N/A	N/A
PHROG	UHGV-0021334_25	phrog_25	49.5	0.000000000000068	head closure Hc1	connector
UniRef90	UHGV-0021334_25	UniRef90_A0A845R2W2	72.4	0.0000000000000502	Head-tail adaptor protein	N/A
Pfam	UHGV-0021334_25	PF05521	N/A	N/A	Phage head-tail joining protein	Phage_H_T_join
NCBIFam	UHGV-0021334_25	TIGR01563.1	N/A	N/A	phage head closure protein	N/A
structural_annotation	UHGV-0021334_25	PF05521,TIGR01563,COG5614	N/A	N/A	N/A	N/A
PHROG	UHGV-0021334_26	phrog_40	45.3	0.00000000000095	head-tail adaptor Ad1	connector
UniRef90	UHGV-0021334_26	UniRef90_A0A8J6JAY9	62.8	0.000000000147	Phage gp6-like head-tail connector protein	N/A
eggNOG-mapper	UHGV-0021334_26	1403313.AXBR01000002_gene4324	57.8	0.00000000141	Phage gp6-like head-tail connector protein	N/A
Pfam	UHGV-0021334_26	PF05135	N/A	N/A	Phage gp6-like head-tail connector protein	Phage_connect_1
NCBIFam	UHGV-0021334_26	TIGR01560.2	N/A	N/A	head-tail connector protein	N/A
PHROG	UHGV-0021334_27	phrog_10	69.0	7e-20	major head protein	head and packaging
UniRef90	UHGV-0021334_27	UniRef90_UPI001BB4749F	452.0	0	phage major capsid protein	N/A
eggNOG-mapper	UHGV-0021334_27	742740.HMPREF9474_04304	173.0	0	Phage capsid family	N/A
Pfam	UHGV-0021334_27	PF05065	N/A	N/A	Phage capsid family	Phage_capsid
NCBIFam	UHGV-0021334_27	TIGR01554.2	N/A	N/A	phage major capsid protein	N/A
structural_annotation	UHGV-0021334_27	PF05065,PF14182,MF_04119,TIGR01554,COG4653	N/A	N/A	N/A	N/A
KOfam	UHGV-0021334_28	K01358	99.3	5.3e-29	clpP, CLPP; ATP-dependent Clp protease, protease subunit [EC:3.4.21.92]	N/A
PHROG	UHGV-0021334_28	phrog_94	170.7	0	head maturation protease	head and packaging
UniRef90	UHGV-0021334_28	UniRef90_A0A644ZMQ3	236.0	0	ATP-dependent Clp protease proteolytic subunit	N/A
eggNOG-mapper	UHGV-0021334_28	557436.Lreu_1115	135.0	3.14e-36	Belongs to the peptidase S14 family	N/A
Pfam	UHGV-0021334_28	PF00574	N/A	N/A	Clp protease	CLP_protease
COG	UHGV-0021334_28	COG0740	N/A	N/A	ATP-dependent protease ClpP, protease subunit	N/A
structural_annotation	UHGV-0021334_28	PF00574,MF_00444,NF011090,COG0740	N/A	N/A	N/A	N/A
PHROG	UHGV-0021334_29	phrog_12	287.9	0	portal protein	head and packaging
UniRef90	UHGV-0021334_29	UniRef90_A0A3D4EI33	573.0	0	Phage portal protein	N/A
eggNOG-mapper	UHGV-0021334_29	1120971.AUCA01000066_gene593	222.0	0	Phage portal protein	N/A
Pfam	UHGV-0021334_29	PF04860	N/A	N/A	Phage portal protein	Phage_portal
NCBIFam	UHGV-0021334_29	TIGR01537.1	N/A	N/A	phage portal protein	N/A
COG	UHGV-0021334_29	COG4695	N/A	N/A	Phage portal protein BeeE	N/A
structural_annotation	UHGV-0021334_29	PF04860,MF_04135,TIGR01537,COG4695	N/A	N/A	N/A	N/A
PHROG	UHGV-0021334_31	phrog_9	338.5	0	terminase large subunit	head and packaging
UniRef90	UHGV-0021334_31	UniRef90_A0A3D4EH51	915.0	0	Terminase large subunit	N/A
eggNOG-mapper	UHGV-0021334_31	693746.OBV_20000	858.0	0	Phage terminase-like protein large subunit	N/A
Pfam	UHGV-0021334_31	PF03354	N/A	N/A	Terminase large subunit, ATPase domain	TerL_ATPase
Pfam	UHGV-0021334_31	PF20441	N/A	N/A	Terminase large subunit, endonuclease domain	TerL_nuclease
COG	UHGV-0021334_31	COG4626	N/A	N/A	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	N/A
structural_annotation	UHGV-0021334_31	PF20441,PF03354,MF_04145,TIGR01547,COG4626	N/A	N/A	N/A	N/A
PHROG	UHGV-0021334_32	phrog_83	53.2	0.0000000000000054	terminase small subunit	head and packaging
UniRef90	UHGV-0021334_32	UniRef90_UPI000C77CC02	118.0	1.7e-30	P27 family phage terminase small subunit	N/A
Pfam	UHGV-0021334_32	PF05119	N/A	N/A	Phage terminase, small subunit	Terminase_4
COG	UHGV-0021334_32	COG3747	N/A	N/A	Phage terminase, small subunit	N/A
structural_annotation	UHGV-0021334_32	PF05119,TIGR01558,COG3747	N/A	N/A	N/A	N/A

All viral genomes

ID	Representative?	Length (bps)	% GC Content	CheckV Completeness	geNomad Score
UHGV-0021334	Yes	20,335	59	56	1