vOTU vOTU-098715

vOTU: vOTU-098715

Overview

Genome (FASTA) Annotation Track (GFF) Proteins (FASTA) Protein Annotation (TSV)

Cluster properties
vOTU ID	vOTU-098715
Number of genomes	1
Taxonomy (ICTV)	Bacteria → Firmicutes_A → Clostridia → Oscillospirales → Ruminococcaceae
Taxonomy (UHGV)	vFAM-00026 → vSUBFAM-01646 → vOTU-098715
Host lineage	Bacteria → Firmicutes_A → Clostridia → Oscillospirales → Ruminococcaceae
Host range breadth	Family
Lifestyle	lytic (Evidence: BACPHLIP)

Representative genome
Genome ID	UHGV-0019122
Biosample ID	SAMEA4765618
Genome length (bp)	33,227 bps
CheckV completeness	87.31% (Medium-quality)
CDS count	47
CDS density	93.56%
tRNA count	0
Integrase	No
Viral confidence	Confident

Host assignment details
Assignment method	CRISPR
CRISPR-predicted host lineage	Bacteria → Firmicutes_A → Clostridia → Oscillospirales → Ruminococcaceae	Total connections	180	Host agreement	100
PHIST-predicted host lineage	Bacteria → Firmicutes_A → Clostridia → Oscillospirales → Ruminococcaceae	Total connections	14	Host agreement	100

Representative genome content

Select to view: Genome Viewer Functional Annotation

Genome view (completeness: 87.31)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
UniRef90	UHGV-0019122_4	UniRef90_E6UJK8	68.6	0.000000000000038	HTH cro/C1-type domain-containing protein	N/A
eggNOG-mapper	UHGV-0019122_4	1410631.JHWZ01000002_gene1263	72.0	4.72e-16	sequence-specific DNA binding	N/A
Pfam	UHGV-0019122_4	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
COG	UHGV-0019122_4	COG2944	N/A	N/A	DNA-binding transcriptional regulator YiaG, XRE-type HTH domain	N/A
structural_annotation	UHGV-0019122_4	PF15731,NF007481,COG2944	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0019122_5	742738.HMPREF9460_04058	60.8	0.00000000193	N/A	N/A
KOfam	UHGV-0019122_6	K08640	93.4	3.9e-29	E3.4.17.14; zinc D-Ala-D-Ala carboxypeptidase [EC:3.4.17.14]	N/A
PHROG	UHGV-0019122_6	phrog_894	84.3	1.5e-24	endolysin	lysis
UniRef90	UHGV-0019122_6	UniRef90_R7GQH8	209.0	0	Peptidase M15	N/A
eggNOG-mapper	UHGV-0019122_6	641112.ACOK01000068_gene2796	215.0	0	hydrolase, family 25	N/A
Pfam	UHGV-0019122_6	PF08291	N/A	N/A	Peptidase M15	Peptidase_M15_3
Pfam	UHGV-0019122_6	PF01471	N/A	N/A	Putative peptidoglycan binding domain	PG_binding_1
COG	UHGV-0019122_6	COG3108	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0019122_6	PF05951,PF01471,COG3108,COG3409	N/A	N/A	N/A	N/A
PHROG	UHGV-0019122_7	phrog_199	41.6	0.000000000012	holin	lysis
UniRef90	UHGV-0019122_7	UniRef90_UPI0002E39164	143.0	8.59977e-42	phage holin family protein	N/A
eggNOG-mapper	UHGV-0019122_7	1437610.BREU_1264	52.4	0.000000683	Bacteriophage holin family	N/A
Pfam	UHGV-0019122_7	PF05105	N/A	N/A	Bacteriophage holin family	Phage_holin_4_1
NCBIFam	UHGV-0019122_7	TIGR01593.1	N/A	N/A	toxin secretion/phage lysis holin	N/A
structural_annotation	UHGV-0019122_7	PF05105,TIGR01593,COG4824	N/A	N/A	N/A	N/A
PHROG	UHGV-0019122_9	phrog_1067	122.5	3.3e-36	minor head protein	head and packaging
UniRef90	UHGV-0019122_9	UniRef90_A0A352DNT6	382.0	0	Prophage_tailD1 domain-containing protein	N/A
eggNOG-mapper	UHGV-0019122_9	272562.CA_C0063	117.0	7.72e-25	Prophage endopeptidase tail	N/A
Pfam	UHGV-0019122_9	PF06605	N/A	N/A	Prophage endopeptidase tail	Prophage_tail
NCBIFam	UHGV-0019122_9	TIGR01665.1	N/A	N/A	phage tail spike protein	N/A
COG	UHGV-0019122_9	COG4926	N/A	N/A	Phage-related protein	N/A
PHROG	UHGV-0019122_11	phrog_33	60.9	3.3e-17	distal tail protein Dit	tail
UniRef90	UHGV-0019122_11	UniRef90_A0A110A7B6	75.1	0.00000000000105	Phage tail protein	N/A
structural_annotation	UHGV-0019122_11	PF20195,TIGR01633,COG4722	N/A	N/A	N/A	N/A
KOfam	UHGV-0019122_12	K05636	40.0	0.0000000000000015	LAMB1; laminin, beta 1	N/A
PHROG	UHGV-0019122_12	phrog_19074	454.7	0	N/A	unknown function
UniRef90	UHGV-0019122_12	UniRef90_A0A352DNT9	879.0	0	Phage tail tape measure protein	N/A
eggNOG-mapper	UHGV-0019122_12	1118059.CAHC01000003_gene808	351.0	0	Phage tail tape measure protein, TP901 family	N/A
Pfam	UHGV-0019122_12	PF10145	N/A	N/A	Phage-related minor tail protein	PhageMin_Tail
NCBIFam	UHGV-0019122_12	TIGR01760.1	N/A	N/A	phage tail tape measure protein	N/A
COG	UHGV-0019122_12	COG5283	N/A	N/A	Phage-related tail protein	N/A
structural_annotation	UHGV-0019122_12	PF10145,TIGR01760,COG5280	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0019122_13	665956.HMPREF1032_00110	50.1	0.00000107	N/A	N/A
UniRef90	UHGV-0019122_14	UniRef90_A0A3D3FES6	130.0	5.56e-34	S-l_SbsC_C domain-containing protein	N/A
eggNOG-mapper	UHGV-0019122_14	588581.Cpap_1267	163.0	0	N/A	N/A
structural_annotation	UHGV-0019122_14	PF04630,TIGR01603,COG5437	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0019122_15	638301.HMPREF0444_1501	64.3	0.00000000000622	N/A	N/A
structural_annotation	UHGV-0019122_15	PF20765	N/A	N/A	N/A	N/A
UniRef90	UHGV-0019122_16	UniRef90_UPI001CFE163F	75.5	0.00000000000000275	HK97 gp10 family phage protein	N/A
eggNOG-mapper	UHGV-0019122_16	1226322.HMPREF1545_00119	70.5	0.0000000000000531	N/A	N/A
Pfam	UHGV-0019122_16	PF04883	N/A	N/A	Bacteriophage HK97-gp10, putative tail-component	HK97-gp10_like
structural_annotation	UHGV-0019122_16	PF20039,TIGR01725,COG5005	N/A	N/A	N/A	N/A
PHROG	UHGV-0019122_17	phrog_25	56.1	6.5e-16	head closure Hc1	connector
UniRef90	UHGV-0019122_17	UniRef90_A0A315Y1I6	88.2	2.03e-20	SPP1 family predicted phage head-tail adaptor	N/A
eggNOG-mapper	UHGV-0019122_17	1235799.C818_00437	67.0	0.000000000001	Phage head-tail joining protein	N/A
Pfam	UHGV-0019122_17	PF05521	N/A	N/A	Phage head-tail joining protein	Phage_H_T_join
NCBIFam	UHGV-0019122_17	TIGR01563.1	N/A	N/A	phage head closure protein	N/A
COG	UHGV-0019122_17	COG5614	N/A	N/A	Phage head-tail adaptor	N/A
structural_annotation	UHGV-0019122_17	PF05521,TIGR01563,COG5614	N/A	N/A	N/A	N/A
UniRef90	UHGV-0019122_18	UniRef90_A0A315Y307	86.3	4.57e-20	Gp6-like head-tail connector protein	N/A
eggNOG-mapper	UHGV-0019122_18	536233.CLO_1364	69.7	0.0000000000000217	Phage gp6-like head-tail connector protein	N/A
NCBIFam	UHGV-0019122_18	TIGR01560.2	N/A	N/A	head-tail connector protein	N/A
structural_annotation	UHGV-0019122_18	PF05135,TIGR01560	N/A	N/A	N/A	N/A
PHROG	UHGV-0019122_19	phrog_10	223.9	0	major head protein	head and packaging
UniRef90	UHGV-0019122_19	UniRef90_UPI0009511B79	437.0	0	phage major capsid protein	N/A
eggNOG-mapper	UHGV-0019122_19	397288.C806_00073	294.0	0	phage major capsid protein, HK97 family	N/A
Pfam	UHGV-0019122_19	PF05065	N/A	N/A	Phage capsid family	Phage_capsid
NCBIFam	UHGV-0019122_19	TIGR01554.2	N/A	N/A	phage major capsid protein	N/A
COG	UHGV-0019122_19	COG4653	N/A	N/A	Predicted phage phi-C31 gp36 major capsid-like protein	N/A
structural_annotation	UHGV-0019122_19	PF05065,MF_04119,TIGR01554,COG4653	N/A	N/A	N/A	N/A
KOfam	UHGV-0019122_20	K06904	71.7	1.4e-20	N/A	N/A
PHROG	UHGV-0019122_20	phrog_80	96.0	6.3e-28	head maturation protease	head and packaging
UniRef90	UHGV-0019122_20	UniRef90_A0A315Y107	248.0	0	HK97 family phage prohead protease	N/A
eggNOG-mapper	UHGV-0019122_20	1304866.K413DRAFT_1224	164.0	0	Phage prohead protease, HK97 family	N/A
Pfam	UHGV-0019122_20	PF04586	N/A	N/A	Caudovirus prohead serine protease	Peptidase_S78
COG	UHGV-0019122_20	COG3740	N/A	N/A	Phage head maturation protease	N/A
structural_annotation	UHGV-0019122_20	PF04586,TIGR01543,COG3740	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0019122_21	PF12305	N/A	N/A	N/A	N/A
PHROG	UHGV-0019122_22	phrog_12	168.1	0	portal protein	head and packaging
UniRef90	UHGV-0019122_22	UniRef90_A0A315Y4J8	560.0	0	HK97 family phage portal protein	N/A
eggNOG-mapper	UHGV-0019122_22	1304866.K413DRAFT_1223	336.0	0	Phage portal protein, HK97 family	N/A
Pfam	UHGV-0019122_22	PF04860	N/A	N/A	Phage portal protein	Phage_portal
NCBIFam	UHGV-0019122_22	TIGR01537.1	N/A	N/A	phage portal protein	N/A
COG	UHGV-0019122_22	COG4695	N/A	N/A	Phage portal protein BeeE	N/A
PHROG	UHGV-0019122_23	phrog_9	246.1	0	terminase large subunit	head and packaging
UniRef90	UHGV-0019122_23	UniRef90_A0A352DNQ0	816.0	0	Terminase	N/A
eggNOG-mapper	UHGV-0019122_23	1414720.CBYM010000002_gene575	720.0	0	Terminase	N/A
Pfam	UHGV-0019122_23	PF03354	N/A	N/A	Terminase large subunit, ATPase domain	TerL_ATPase
Pfam	UHGV-0019122_23	PF20441	N/A	N/A	Terminase large subunit, endonuclease domain	TerL_nuclease
COG	UHGV-0019122_23	COG4626	N/A	N/A	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	N/A
structural_annotation	UHGV-0019122_23	PF20441,PF03354,MF_04146,TIGR01547,COG4626	N/A	N/A	N/A	N/A
PHROG	UHGV-0019122_24	phrog_83	74.4	1.4e-21	terminase small subunit	head and packaging
UniRef90	UHGV-0019122_24	UniRef90_UPI000C75D643	150.0	9.24857e-44	phage terminase small subunit P27 family	N/A
eggNOG-mapper	UHGV-0019122_24	536233.CLO_1359	145.0	2.0501e-42	phage terminase small subunit	N/A
Pfam	UHGV-0019122_24	PF05119	N/A	N/A	Phage terminase, small subunit	Terminase_4
COG	UHGV-0019122_24	COG3747	N/A	N/A	Phage terminase, small subunit	N/A
structural_annotation	UHGV-0019122_24	PF05119,TIGR01558,COG3747	N/A	N/A	N/A	N/A
PHROG	UHGV-0019122_26	phrog_36	57.0	3.7e-16	transcriptional regulator	transcription regulation
UniRef90	UHGV-0019122_26	UniRef90_UPI0005D1DECF	57.8	0.0000000728	N/A	N/A
eggNOG-mapper	UHGV-0019122_26	1410624.JNKK01000017_gene1964	53.5	0.000000542	sigma factor activity	N/A
COG	UHGV-0019122_26	COG1191	N/A	N/A	DNA-directed RNA polymerase specialized sigma subunit	N/A
structural_annotation	UHGV-0019122_26	PF07374,MF_00674,TIGR01636,COG2739	N/A	N/A	N/A	N/A
PHROG	UHGV-0019122_30	phrog_2245	84.3	1.4e-24	nucleoside triphosphate pyrophosphohydrolase	other
UniRef90	UHGV-0019122_30	UniRef90_A0A315Y0X2	119.0	1.06e-32	MazG-like nucleotide pyrophosphohydrolase family protein	N/A
eggNOG-mapper	UHGV-0019122_30	428127.EUBDOL_01514	50.1	0.00000208	N/A	N/A
structural_annotation	UHGV-0019122_30	PF01503,MF_01019,NF001613,COG0140	N/A	N/A	N/A	N/A
KOfam	UHGV-0019122_32	K01160	56.6	7.8e-16	rusA; crossover junction endodeoxyribonuclease RusA [EC:3.1.21.10]	N/A
PHROG	UHGV-0019122_32	phrog_140	101.4	8.9e-30	RusA-like Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0019122_32	UniRef90_A0A3D5KWI4	158.0	0	RusA family crossover junction endodeoxyribonuclease	N/A
eggNOG-mapper	UHGV-0019122_32	641112.ACOK01000073_gene2878	173.0	0	endodeoxyribonuclease RusA	N/A
Pfam	UHGV-0019122_32	PF05866	N/A	N/A	Endodeoxyribonuclease RusA	RusA
COG	UHGV-0019122_32	COG4570	N/A	N/A	Holliday junction resolvase RusA (prophage-encoded endonuclease)	N/A
structural_annotation	UHGV-0019122_32	PF05866,NF007305,COG4570	N/A	N/A	N/A	N/A
KOfam	UHGV-0019122_33	K07505	360.5	0	repA; regulatory protein RepA	N/A
PHROG	UHGV-0019122_33	phrog_2597	1116.9	0	DNA primase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0019122_33	UniRef90_A0A3C0IIQ3	983.0	0	DNA primase	N/A
eggNOG-mapper	UHGV-0019122_33	641112.ACOK01000073_gene2877	1234.0	0	Primase C terminal 2 (PriCT-2)	N/A
Pfam	UHGV-0019122_33	PF08707	N/A	N/A	Primase C terminal 2 (PriCT-2)	PriCT_2
Pfam	UHGV-0019122_33	PF13481	N/A	N/A	AAA domain	AAA_25
COG	UHGV-0019122_33	COG3598	N/A	N/A	RecA-family ATPase	N/A
structural_annotation	UHGV-0019122_33	PF13481,PF16793,PF08220,MF_00350,MF_00700,NF006606,NF001641,COG3598,COG3285	N/A	N/A	N/A	N/A
KOfam	UHGV-0019122_34	K17677	349.4	0	IRC3; ATP-dependent helicase IRC3 [EC:5.6.2.-]	N/A
PHROG	UHGV-0019122_34	phrog_16	293.4	0	DNA helicase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0019122_34	UniRef90_R7GUH4	811.0	0	Helicase C-terminal domain protein	N/A
eggNOG-mapper	UHGV-0019122_34	641112.ACOK01000073_gene2876	932.0	0	helicase superfamily c-terminal domain	N/A
PADLOC	UHGV-0019122_34	mREase_IV_00005	133.1	2.5e-39	Type IV methyl-directed restriction enzyme	RM
Pfam	UHGV-0019122_34	PF04851	N/A	N/A	Type III restriction enzyme, res subunit	ResIII
Pfam	UHGV-0019122_34	PF00271	N/A	N/A	Helicase conserved C-terminal domain	Helicase_C
COG	UHGV-0019122_34	COG1061	N/A	N/A	Superfamily II DNA or RNA helicase	N/A
structural_annotation	UHGV-0019122_34	PF04851,PF16203,MF_01489,NF008521,COG1061	N/A	N/A	N/A	N/A
PHROG	UHGV-0019122_35	phrog_2698	173.6	0	N/A	unknown function
UniRef90	UHGV-0019122_35	UniRef90_UPI001D0882DA	130.0	1.79e-34	N/A	N/A
eggNOG-mapper	UHGV-0019122_35	641112.ACOK01000073_gene2875	231.0	0	N/A	N/A
structural_annotation	UHGV-0019122_35	PF17426,NF005674	N/A	N/A	N/A	N/A
PHROG	UHGV-0019122_36	phrog_124	185.7	0	Sak4-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0019122_36	UniRef90_UPI001C0F250F	300.0	0	AAA family ATPase	N/A
eggNOG-mapper	UHGV-0019122_36	641112.ACOK01000073_gene2874	531.0	0	AAA domain	N/A
Pfam	UHGV-0019122_36	PF13479	N/A	N/A	AAA domain	AAA_24
structural_annotation	UHGV-0019122_36	PF13479,MF_00268,TIGR01618,COG0468	N/A	N/A	N/A	N/A
PHROG	UHGV-0019122_38	phrog_374	171.4	0	HNH endonuclease	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0019122_38	UniRef90_A0A0R1VMU2	156.0	1.4013e-45	Pathogenesis-related transcriptional factor and ERF protein	N/A
eggNOG-mapper	UHGV-0019122_38	511437.Lbuc_1541	154.0	2.10195e-44	N/A	N/A
structural_annotation	UHGV-0019122_38	PF17375	N/A	N/A	N/A	N/A
KOfam	UHGV-0019122_39	K03546	70.2	2.4e-20	sbcC, rad50; DNA repair protein SbcC/Rad50	N/A
PHROG	UHGV-0019122_39	phrog_1499	461.7	0	N/A	unknown function
UniRef90	UHGV-0019122_39	UniRef90_A0A3C0II26	530.0	0	Chromosome segregation protein SMC	N/A
eggNOG-mapper	UHGV-0019122_39	641112.ACOK01000073_gene2873	627.0	0	domain protein	N/A
PADLOC	UHGV-0019122_39	AAA_15	41.9	0.00000000002	N/A	N/A
Pfam	UHGV-0019122_39	PF13476	N/A	N/A	AAA domain	AAA_23
COG	UHGV-0019122_39	COG1196	N/A	N/A	Chromosome segregation ATPase Smc	N/A
structural_annotation	UHGV-0019122_39	PF11398,MF_00365,TIGR00634,COG0497	N/A	N/A	N/A	N/A
PHROG	UHGV-0019122_40	phrog_424	81.6	9.2e-24	phosphoadenosine phosphosulfate reductase	moron, auxiliary metabolic gene and host takeover
eggNOG-mapper	UHGV-0019122_40	693746.OBV_43240	461.0	0	N/A	N/A
COG	UHGV-0019122_40	COG0175	N/A	N/A	3'-phosphoadenosine 5'-phosphosulfate sulfotransferase (PAPS reductase)/FAD synthetase or related enzyme	N/A
structural_annotation	UHGV-0019122_40	PF01507,MF_00064,TIGR00434,COG0175	N/A	N/A	N/A	N/A
PHROG	UHGV-0019122_41	phrog_757	189.5	0	DNA methyltransferase	other
UniRef90	UHGV-0019122_41	UniRef90_A0A374BFJ7	406.0	0	DNA cytosine methyltransferase	N/A
eggNOG-mapper	UHGV-0019122_41	397290.C810_01487	275.0	0	DNA (cytosine-5-)-methyltransferase activity	N/A
COG	UHGV-0019122_41	COG0270	N/A	N/A	DNA-cytosine methylase	N/A
structural_annotation	UHGV-0019122_41	PF00145,MF_01872,TIGR00675,COG0270	N/A	N/A	N/A	N/A

All viral genomes

ID	Representative?	Length (bps)	% GC Content	CheckV Completeness	geNomad Score
UHGV-0019122	Yes	33,227	46	87	1