vOTU vOTU-098789

vOTU: vOTU-098789

Overview

Genome (FASTA) Annotation Track (GFF) Proteins (FASTA) Protein Annotation (TSV)

Cluster properties
vOTU ID	vOTU-098789
Number of genomes	3
Taxonomy (ICTV)	Bacteria → Firmicutes_A → Clostridia → Oscillospirales → Ruminococcaceae → Angelakisella → Angelakisella sp900547385
Taxonomy (UHGV)	vFAM-00005 → vSUBFAM-00346 → vGENUS-00244 → vOTU-098789
Host lineage	Bacteria → Firmicutes_A → Clostridia → Oscillospirales → Ruminococcaceae → Angelakisella → Angelakisella sp004557855
Host range breadth	Species
Lifestyle	temperate (Evidence: integrase)

Representative genome
Genome ID	UHGV-0182192
Biosample ID	SAMEA3951706
Genome length (bp)	28,098 bps
CheckV completeness	72.35% (Medium-quality)
CDS count	49
CDS density	92.83%
tRNA count	1
Integrase	Yes
Viral confidence	Confident

Host assignment details
Assignment method	CRISPR
CRISPR-predicted host lineage	Bacteria → Firmicutes_A → Clostridia → Oscillospirales → Ruminococcaceae → Angelakisella → Angelakisella sp004557855	Total connections	35	Host agreement	71.43
PHIST-predicted host lineage	Bacteria → Firmicutes_A → Clostridia → Oscillospirales → Ruminococcaceae → Angelakisella → Angelakisella sp900547385	Total connections	9	Host agreement	100

Representative genome content

Select to view: Genome Viewer Functional Annotation

Genome view (completeness: 72.35)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
KOfam	UHGV-0182192_1	K14059	208.6	0	int; integrase	N/A
PHROG	UHGV-0182192_1	phrog_1	173.3	0	integrase	integration and excision
UniRef90	UHGV-0182192_1	UniRef90_A0A810Q7Y9	519.0	0	Tyr recombinase domain-containing protein	N/A
eggNOG-mapper	UHGV-0182192_1	877414.ATWA01000005_gene699	471.0	0	Phage integrase family	N/A
Pfam	UHGV-0182192_1	PF00589	N/A	N/A	Phage integrase family	Phage_integrase
COG	UHGV-0182192_1	COG0582	N/A	N/A	Integrase/recombinase, includes phage integrase	N/A
structural_annotation	UHGV-0182192_1	PF00589,MF_02055,NF040815,COG4974	N/A	N/A	N/A	N/A
KOfam	UHGV-0182192_2	K14059	181.4	0	int; integrase	N/A
PHROG	UHGV-0182192_2	phrog_1	159.0	0	integrase	integration and excision
UniRef90	UHGV-0182192_2	UniRef90_A0A8D9PE11	433.0	0	Integrase	N/A
eggNOG-mapper	UHGV-0182192_2	1507.HMPREF0262_00307	185.0	0	Phage integrase family	N/A
Pfam	UHGV-0182192_2	PF00589	N/A	N/A	Phage integrase family	Phage_integrase
COG	UHGV-0182192_2	COG0582	N/A	N/A	Integrase/recombinase, includes phage integrase	N/A
structural_annotation	UHGV-0182192_2	PF00589,PF14659,MF_02055,TIGR02224,COG4974	N/A	N/A	N/A	N/A
PHROG	UHGV-0182192_3	phrog_2158	220.1	0	abortive infection resistance protein	moron, auxiliary metabolic gene and host takeover
UniRef90	UHGV-0182192_3	UniRef90_A0A374NCP5	316.0	0	Abi family protein	N/A
eggNOG-mapper	UHGV-0182192_3	1045858.Bint_2390	286.0	0	Abi-like protein	N/A
PADLOC	UHGV-0182192_3	AbiD	325.6	0	AbiD	Abi
Pfam	UHGV-0182192_3	PF07751	N/A	N/A	Abi-like protein	Abi_2
COG	UHGV-0182192_3	COG4823	N/A	N/A	Abortive infection bacteriophage resistance protein	N/A
structural_annotation	UHGV-0182192_3	PF07751,COG4823	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0182192_4	756499.Desde_3141	56.6	0.000000486	Bacterial Ig-like domain 2	N/A
NCBIFam	UHGV-0182192_4	NF033223.2	N/A	N/A	YHYH domain-containing protein	N/A
COG	UHGV-0182192_4	COG5492	N/A	N/A	N/A	N/A
UniRef90	UHGV-0182192_5	UniRef90_A0A8D9PDX9	164.0	0	Histone H3.3 finger-like protein	N/A
PHROG	UHGV-0182192_6	phrog_8	40.1	0.000000000069	transcriptional regulator	transcription regulation
UniRef90	UHGV-0182192_6	UniRef90_A0A372V3Y4	91.7	7.87e-22	XRE family transcriptional regulator	N/A
eggNOG-mapper	UHGV-0182192_6	1378168.N510_01712	77.8	5.62e-16	N/A	N/A
UniRef90	UHGV-0182192_7	UniRef90_A0A372V3V8	68.2	0.0000000000000911	XRE family transcriptional regulator	N/A
structural_annotation	UHGV-0182192_7	PF13560,NF041951,COG1396	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0182192_12	PF12728,NF040990	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0182192_13	NF041588	N/A	N/A	N/A	N/A
PHROG	UHGV-0182192_17	phrog_14970	193.6	0	N/A	unknown function
UniRef90	UHGV-0182192_17	UniRef90_UPI00123F00F5	174.0	0	Rad52/Rad22 family DNA repair protein	N/A
eggNOG-mapper	UHGV-0182192_17	428127.EUBDOL_01248	155.0	5.60519e-45	double-strand break repair protein	N/A
Pfam	UHGV-0182192_17	PF04098	N/A	N/A	Rad52/22 family double-strand break repair protein	Rad52_Rad22
COG	UHGV-0182192_17	COG4712	N/A	N/A	Predicted ssDNA annealing protein, contains HHH motif, Rad42/Rad22/RecT/erf family	N/A
structural_annotation	UHGV-0182192_17	PF04098,TIGR00607,COG4712	N/A	N/A	N/A	N/A
PHROG	UHGV-0182192_18	phrog_72	53.2	0.0000000000000036	NinB/ Orf homologous recombination mediator	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0182192_18	UniRef90_A0A8D9PDS2	160.0	0	NinB protein	N/A
eggNOG-mapper	UHGV-0182192_18	445972.ANACOL_01825	142.0	1.15e-40	N/A	N/A
structural_annotation	UHGV-0182192_18	PF05772	N/A	N/A	N/A	N/A
PHROG	UHGV-0182192_19	phrog_7566	51.8	0.000000000000011	N/A	unknown function
eggNOG-mapper	UHGV-0182192_19	693746.OBV_24070	69.7	0.0000000000000683	N/A	N/A
KOfam	UHGV-0182192_20	K03111	128.4	8.4e-38	ssb; single-strand DNA-binding protein	N/A
PHROG	UHGV-0182192_20	phrog_44	131.3	6.8e-39	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0182192_20	UniRef90_UPI001E2A5A6F	234.0	0	single-stranded DNA-binding protein	N/A
eggNOG-mapper	UHGV-0182192_20	445972.ANACOL_01827	122.0	7.09e-34	Single-stranded DNA-binding protein	N/A
Pfam	UHGV-0182192_20	PF00436	N/A	N/A	Single-strand binding protein family	SSB
NCBIFam	UHGV-0182192_20	TIGR00621.2	N/A	N/A	single-stranded DNA-binding protein	N/A
COG	UHGV-0182192_20	COG0629	N/A	N/A	Single-stranded DNA-binding protein	N/A
HAMAP	UHGV-0182192_20	MF_00984	N/A	N/A	Single-stranded DNA-binding protein	N/A
structural_annotation	UHGV-0182192_20	PF00436,MF_00984,NF005241,COG0629	N/A	N/A	N/A	N/A
PHROG	UHGV-0182192_22	phrog_9474	95.2	7.5e-28	replication initiation protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0182192_22	UniRef90_A0A8B3R1H0	106.0	3.96e-24	Phage replication protein	N/A
eggNOG-mapper	UHGV-0182192_22	203119.Cthe_2466	127.0	4.33e-32	N/A	N/A
structural_annotation	UHGV-0182192_22	PF01475,NF006999,COG0735	N/A	N/A	N/A	N/A
PHROG	UHGV-0182192_23	phrog_9804	167.1	0	N/A	unknown function
UniRef90	UHGV-0182192_23	UniRef90_UPI001E312ACC	354.0	0	replicative helicase loader/inhibitor	N/A
eggNOG-mapper	UHGV-0182192_23	1121344.JHZO01000003_gene981	181.0	0	Loader and inhibitor of phage G40P	N/A
Pfam	UHGV-0182192_23	PF11417	N/A	N/A	Loader and inhibitor of phage G40P	Inhibitor_G39P
structural_annotation	UHGV-0182192_23	PF11417	N/A	N/A	N/A	N/A
KOfam	UHGV-0182192_24	K00390	98.3	7.8e-29	cysH; phosphoadenosine phosphosulfate reductase [EC:1.8.4.8 1.8.4.10]	N/A
PHROG	UHGV-0182192_24	phrog_424	126.3	1.5e-37	phosphoadenosine phosphosulfate reductase	moron, auxiliary metabolic gene and host takeover
UniRef90	UHGV-0182192_24	UniRef90_UPI001D087498	356.0	0	phosphoadenosine phosphosulfate reductase family protein	N/A
eggNOG-mapper	UHGV-0182192_24	1408437.JNJN01000032_gene2312	323.0	0	Phosphoadenosine phosphosulfate reductase	N/A
PADLOC	UHGV-0182192_24	BrxP_00001	61.6	5.5e-18	BrxP	BREX
Pfam	UHGV-0182192_24	PF01507	N/A	N/A	Phosphoadenosine phosphosulfate reductase family	PAPS_reduct
COG	UHGV-0182192_24	COG0175	N/A	N/A	3'-phosphoadenosine 5'-phosphosulfate sulfotransferase (PAPS reductase)/FAD synthetase or related enzyme	N/A
structural_annotation	UHGV-0182192_24	PF01507,MF_00063,NF010369,COG0175	N/A	N/A	N/A	N/A
KOfam	UHGV-0182192_25	K01160	69.5	8.1e-20	rusA; crossover junction endodeoxyribonuclease RusA [EC:3.1.21.10]	N/A
PHROG	UHGV-0182192_25	phrog_34	74.4	1.6e-21	RusA-like Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0182192_25	UniRef90_A0A498CNH4	142.0	7.48013e-42	RusA family crossover junction endodeoxyribonuclease	N/A
COG	UHGV-0182192_25	COG4570	N/A	N/A	Holliday junction resolvase RusA (prophage-encoded endonuclease)	N/A
structural_annotation	UHGV-0182192_25	PF19595,NF007305,COG4570	N/A	N/A	N/A	N/A
KOfam	UHGV-0182192_26	K00558	47.5	0.00000000000015	DNMT1, dcm; DNA (cytosine-5)-methyltransferase 1 [EC:2.1.1.37]	N/A
PHROG	UHGV-0182192_26	phrog_757	120.4	1.1e-35	DNA methyltransferase	other
UniRef90	UHGV-0182192_26	UniRef90_A0A2V2GLN0	407.0	0	DNA methyltransferase (Fragment)	N/A
eggNOG-mapper	UHGV-0182192_26	622312.ROSEINA2194_01264	353.0	0	C-5 cytosine-specific DNA methylase	N/A
Pfam	UHGV-0182192_26	PF00145	N/A	N/A	C-5 cytosine-specific DNA methylase	DNA_methylase
COG	UHGV-0182192_26	COG0270	N/A	N/A	DNA-cytosine methylase	N/A
structural_annotation	UHGV-0182192_26	PF00145,MF_00341,TIGR00675,COG0270	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0182192_28	TIGR04381	N/A	N/A	N/A	N/A
PHROG	UHGV-0182192_32	phrog_599	40.4	0.00000000003	Lar-like restriction alleviation protein	moron, auxiliary metabolic gene and host takeover
UniRef90	UHGV-0182192_32	UniRef90_UPI000EF4F8BA	95.5	5.55e-24	Lar family restriction alleviation protein	N/A
dbAPIS	UHGV-0182192_32	APIS033	N/A	N/A	Lar is functionally similar to RaI, is able to alleviate restriction and enhance modification by EcoKI. And the nucleotide sequences of their genes share 47% identity, indicating a common origin.	N/A
PHROG	UHGV-0182192_33	phrog_22543	40.5	0.000000000044	N/A	unknown function
PHROG	UHGV-0182192_36	phrog_36	41.0	0.000000000034	transcriptional regulator	transcription regulation
UniRef90	UHGV-0182192_36	UniRef90_UPI001D0837DD	117.0	8.8e-31	N/A	N/A
eggNOG-mapper	UHGV-0182192_36	428125.CLOLEP_01806	88.6	2.69e-20	N/A	N/A
structural_annotation	UHGV-0182192_36	PF07374,TIGR01636	N/A	N/A	N/A	N/A
PHROG	UHGV-0182192_38	phrog_7339	102.8	2.9e-30	DNA repair exonuclease	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0182192_38	UniRef90_A0A2V2GLL9	533.0	0	Metallophos_2 domain-containing protein	N/A
eggNOG-mapper	UHGV-0182192_38	1150474.JQJI01000006_gene784	94.4	3.71e-20	metallophosphoesterase	N/A
Pfam	UHGV-0182192_38	PF00149	N/A	N/A	Calcineurin-like phosphoesterase	Metallophos
COG	UHGV-0182192_38	COG1408	N/A	N/A	Predicted phosphohydrolase, MPP superfamily	N/A
structural_annotation	UHGV-0182192_38	PF12850,MF_00325,NF003118,COG1311	N/A	N/A	N/A	N/A
UniRef90	UHGV-0182192_39	UniRef90_A0A8D9UHF6	184.0	0	N/A	N/A
eggNOG-mapper	UHGV-0182192_39	272630.MexAM1_META1p3985	56.6	0.00000000407	N/A	N/A
Pfam	UHGV-0182192_39	PF18932	N/A	N/A	N/A	DUF5681
KOfam	UHGV-0182192_40	K06909	136.4	2.4e-40	xtmB; phage terminase large subunit	N/A
PHROG	UHGV-0182192_40	phrog_979	162.0	0	terminase large subunit	head and packaging
UniRef90	UHGV-0182192_40	UniRef90_A0A8D9UH35	858.0	0	Large subunit terminase	N/A
eggNOG-mapper	UHGV-0182192_40	1232449.BAHV02000016_gene1824	472.0	0	N/A	N/A
Pfam	UHGV-0182192_40	PF04466	N/A	N/A	Phage terminase large subunit	Terminase_3
COG	UHGV-0182192_40	COG1783	N/A	N/A	Phage terminase large subunit	N/A
structural_annotation	UHGV-0182192_40	PF04466,PF20454,MF_04148,TIGR01547,COG1783	N/A	N/A	N/A	N/A
PHROG	UHGV-0182192_42	phrog_156	168.2	0	portal protein	head and packaging
UniRef90	UHGV-0182192_42	UniRef90_A0A8D9UHD1	1120.0	0	Portal protein	N/A
eggNOG-mapper	UHGV-0182192_42	1121091.AUMP01000003_gene2583	367.0	0	N/A	N/A
structural_annotation	UHGV-0182192_42	PF16510,MF_04120,TIGR01538,COG5518	N/A	N/A	N/A	N/A
UniRef90	UHGV-0182192_43	UniRef90_A0A8D9UHD6	128.0	5.95e-38	Ogr/Delta-like zinc finger	N/A
structural_annotation	UHGV-0182192_43	PF20020	N/A	N/A	N/A	N/A
UniRef90	UHGV-0182192_44	UniRef90_A0A8D9UHB9	415.0	0	Non-structural protein 5	N/A
PHROG	UHGV-0182192_45	phrog_1357	242.0	0	major head protein	head and packaging
UniRef90	UHGV-0182192_45	UniRef90_A0A8D9UHB3	596.0	0	Major capsid protein	N/A
eggNOG-mapper	UHGV-0182192_45	696281.Desru_1092	288.0	0	N/A	N/A
NCBIFam	UHGV-0182192_45	TIGR04387.1	N/A	N/A	N4-gp56 family major capsid protein	N/A
structural_annotation	UHGV-0182192_45	PF13252,MF_04119,TIGR04387,COG4653	N/A	N/A	N/A	N/A
PHROG	UHGV-0182192_46	phrog_15239	42.5	0.0000000000092	N/A	unknown function
PHROG	UHGV-0182192_48	phrog_3287	129.6	1.6e-38	virion structural protein	head and packaging
eggNOG-mapper	UHGV-0182192_48	665956.HMPREF1032_03917	483.0	0	N/A	N/A
structural_annotation	UHGV-0182192_48	PF11134,MF_01282,TIGR03300,COG5276	N/A	N/A	N/A	N/A
KOfam	UHGV-0182192_49	K19721	164.7	0	COL5AS; collagen type V/XI/XXIV/XXVII, alpha	N/A
PHROG	UHGV-0182192_49	phrog_819	152.7	0	tail protein	tail
UniRef90	UHGV-0182192_49	UniRef90_A0A8D9PE13	744.0	0	Virion structural protein	N/A
Pfam	UHGV-0182192_49	PF01391	N/A	N/A	Collagen triple helix repeat (20 copies)	Collagen
COG	UHGV-0182192_49	COG4675	N/A	N/A	Phage tail collar domain	N/A

All viral genomes

ID	Representative?	Length (bps)	% GC Content	CheckV Completeness	geNomad Score
UHGV-0182192	Yes	28,098	52	72	1
UHGV-1408667	No	27,380	52	71	1
UHGV-1314213	No	26,928	52	69	1