vOTU vOTU-098845

vOTU: vOTU-098845

Overview

Genome (FASTA) Annotation Track (GFF) Proteins (FASTA) Protein Annotation (TSV)

Cluster properties
vOTU ID	vOTU-098845
Number of genomes	1
Taxonomy (ICTV)
Taxonomy (UHGV)	vFAM-00003 → vSUBFAM-02447 → vOTU-098845
Host lineage
Host range breadth
Lifestyle	temperate (Evidence: integrase)

Representative genome
Genome ID	UHGV-0017849
Biosample ID	SAMEA4765845
Genome length (bp)	32,767 bps
CheckV completeness	80.55% (Medium-quality)
CDS count	45
CDS density	95.91%
tRNA count	0
Integrase	Yes
Viral confidence	Confident

Host assignment details
Assignment method
CRISPR-predicted host lineage	Total connections	Host agreement
PHIST-predicted host lineage	Total connections	Host agreement

Representative genome content

Select to view: Genome Viewer Functional Annotation

Genome view (completeness: 80.55)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
KOfam	UHGV-0017849_1	K14059	153.4	2.8026e-45	int; integrase	N/A
PHROG	UHGV-0017849_1	phrog_1	183.4	0	integrase	integration and excision
UniRef90	UHGV-0017849_1	UniRef90_Q9CI63	417.0	0	Prophage ps2 probable integrase	N/A
eggNOG-mapper	UHGV-0017849_1	272623.L102735	417.0	0	Phage integrase family	N/A
Pfam	UHGV-0017849_1	PF14659	N/A	N/A	Phage integrase, N-terminal SAM-like domain	Phage_int_SAM_3
Pfam	UHGV-0017849_1	PF00589	N/A	N/A	Phage integrase family	Phage_integrase
COG	UHGV-0017849_1	COG0582	N/A	N/A	Integrase/recombinase, includes phage integrase	N/A
structural_annotation	UHGV-0017849_1	PF00589,PF14659,MF_02055,TIGR02224,COG4974	N/A	N/A	N/A	N/A
PHROG	UHGV-0017849_3	phrog_3374	115.2	6.4e-34	N/A	unknown function
UniRef90	UHGV-0017849_3	UniRef90_D2BQB0	120.0	1.17e-34	N/A	N/A
eggNOG-mapper	UHGV-0017849_3	1394176.AWUO01000014_gene691	116.0	1.33e-33	N/A	N/A
PHROG	UHGV-0017849_4	phrog_87	79.3	2.5e-23	metallo-protease	other
UniRef90	UHGV-0017849_4	UniRef90_H5T0J5	309.0	0	Prophage pi3 protein 58	N/A
eggNOG-mapper	UHGV-0017849_4	272623.L53979	296.0	0	N/A	N/A
KOfam	UHGV-0017849_5	K22300	41.5	0.000000000021	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	N/A
PHROG	UHGV-0017849_5	phrog_2967	95.6	4.1e-28	transcriptional regulator	transcription regulation
UniRef90	UHGV-0017849_5	UniRef90_A0A0V8E346	239.0	0	Phage repressor	N/A
eggNOG-mapper	UHGV-0017849_5	114416.Q8LTS6_9CAUD	218.0	0	sequence-specific DNA binding	N/A
Pfam	UHGV-0017849_5	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
Pfam	UHGV-0017849_5	PF06543	N/A	N/A	Lactococcus bacteriophage repressor	Lac_bphage_repr
UniRef90	UHGV-0017849_6	UniRef90_A0A199YTI3	143.0	2.87266e-43	Repressor	N/A
eggNOG-mapper	UHGV-0017849_6	272623.L39394	132.0	6e-40	N/A	N/A
Pfam	UHGV-0017849_6	PF05339	N/A	N/A	N/A	DUF739
COG	UHGV-0017849_6	COG3655	N/A	N/A	DNA-binding transcriptional regulator, XRE family	N/A
structural_annotation	UHGV-0017849_6	PF05339,NF002773,COG1476	N/A	N/A	N/A	N/A
KOfam	UHGV-0017849_10	K03546	59.6	3.6e-17	sbcC, rad50; DNA repair protein SbcC/Rad50	N/A
PHROG	UHGV-0017849_10	phrog_1499	472.5	0	N/A	unknown function
UniRef90	UHGV-0017849_10	UniRef90_A0A514Z6Z4	666.0	0	AAA family ATPase	N/A
eggNOG-mapper	UHGV-0017849_10	1231377.C426_1294	640.0	0	AAA domain	N/A
Pfam	UHGV-0017849_10	PF02463	N/A	N/A	RecF/RecN/SMC N terminal domain	SMC_N
COG	UHGV-0017849_10	COG1196	N/A	N/A	Chromosome segregation ATPase Smc	N/A
structural_annotation	UHGV-0017849_10	PF11398,MF_00365,TIGR00634,COG0497	N/A	N/A	N/A	N/A
PHROG	UHGV-0017849_11	phrog_59	73.4	2.7e-21	HNH endonuclease	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0017849_11	UniRef90_A0A1V0NHW7	347.0	0	Phage-related HNH endonuclease family protein	N/A
eggNOG-mapper	UHGV-0017849_11	1262538.R9R2G3_9CAUD	54.3	0.000000982	HNH endonuclease	N/A
PADLOC	UHGV-0017849_11	HEase_00016	46.9	0.00000000000079	homing endonuclease	RM
Pfam	UHGV-0017849_11	PF13392	N/A	N/A	HNH endonuclease	HNH_3
PHROG	UHGV-0017849_13	phrog_124	221.7	0	Sak4-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0017849_13	UniRef90_A0A552YZ00	572.0	0	ATP-binding protein	N/A
eggNOG-mapper	UHGV-0017849_13	1231377.C426_1297	481.0	0	AAA domain	N/A
Pfam	UHGV-0017849_13	PF13479	N/A	N/A	AAA domain	AAA_24
structural_annotation	UHGV-0017849_13	PF13479,MF_00268,TIGR01618,COG0468	N/A	N/A	N/A	N/A
PHROG	UHGV-0017849_14	phrog_2698	160.1	0	N/A	unknown function
UniRef90	UHGV-0017849_14	UniRef90_A0A1V0NHY2	284.0	0	N/A	N/A
eggNOG-mapper	UHGV-0017849_14	1231377.C426_1298	158.0	0	N/A	N/A
structural_annotation	UHGV-0017849_14	PF17426,NF005674	N/A	N/A	N/A	N/A
PHROG	UHGV-0017849_15	phrog_997	142.0	2.20004e-42	replication terminator	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0017849_15	UniRef90_A0A2Z3KP46	139.0	5.11999e-40	Replication terminator protein	N/A
eggNOG-mapper	UHGV-0017849_15	1231377.C426_1299	213.0	0	N/A	N/A
PHROG	UHGV-0017849_16	phrog_1029	258.9	0	N/A	unknown function
UniRef90	UHGV-0017849_16	UniRef90_K2PV78	356.0	0	Phage-like protein	N/A
eggNOG-mapper	UHGV-0017849_16	1231377.C426_1300	356.0	0	N/A	N/A
structural_annotation	UHGV-0017849_16	PF10065,COG5532	N/A	N/A	N/A	N/A
KOfam	UHGV-0017849_17	K17677	388.0	0	IRC3; ATP-dependent helicase IRC3 [EC:5.6.2.-]	N/A
PHROG	UHGV-0017849_17	phrog_16	296.7	0	DNA helicase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0017849_17	UniRef90_A0A0V8E9A4	992.0	0	DNA helicase phage-associated Type III restriction enzme	N/A
eggNOG-mapper	UHGV-0017849_17	1231377.C426_1301	934.0	0	helicase	N/A
PADLOC	UHGV-0017849_17	mREase_IV_00005	148.6	4.90454e-44	Type IV methyl-directed restriction enzyme	RM
Pfam	UHGV-0017849_17	PF04851	N/A	N/A	Type III restriction enzyme, res subunit	ResIII
Pfam	UHGV-0017849_17	PF00271	N/A	N/A	Helicase conserved C-terminal domain	Helicase_C
COG	UHGV-0017849_17	COG1061	N/A	N/A	Superfamily II DNA or RNA helicase	N/A
structural_annotation	UHGV-0017849_17	PF04851,PF16203,MF_01489,NF008521,COG1061	N/A	N/A	N/A	N/A
KOfam	UHGV-0017849_18	K07505	365.6	0	repA; regulatory protein RepA	N/A
PHROG	UHGV-0017849_18	phrog_2597	1096.0	0	DNA primase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0017849_18	UniRef90_A0A1V0NHV4	1459.0	0	N/A	N/A
eggNOG-mapper	UHGV-0017849_18	1231377.C426_1302	1231.0	0	Primase C terminal 2 (PriCT-2)	N/A
Pfam	UHGV-0017849_18	PF08707	N/A	N/A	Primase C terminal 2 (PriCT-2)	PriCT_2
Pfam	UHGV-0017849_18	PF13481	N/A	N/A	AAA domain	AAA_25
COG	UHGV-0017849_18	COG3598	N/A	N/A	RecA-family ATPase	N/A
structural_annotation	UHGV-0017849_18	PF13481,PF16793,PF08220,MF_00350,MF_00700,NF006606,NF001641,COG3598,COG3285	N/A	N/A	N/A	N/A
PHROG	UHGV-0017849_19	phrog_3745	89.0	2e-26	N/A	unknown function
UniRef90	UHGV-0017849_19	UniRef90_A0A0V8E9C3	129.0	1.31e-37	N/A	N/A
eggNOG-mapper	UHGV-0017849_19	1158614.I592_02276	53.9	0.0000000109	N/A	N/A
PHROG	UHGV-0017849_21	phrog_190	129.5	2e-38	Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0017849_21	UniRef90_A0A0V8E8R5	228.0	0	N/A	N/A
eggNOG-mapper	UHGV-0017849_21	1231377.C426_1307	223.0	0	N/A	N/A
Pfam	UHGV-0017849_21	PF06356	N/A	N/A	N/A	DUF1064
structural_annotation	UHGV-0017849_21	PF06356,NF033179	N/A	N/A	N/A	N/A
PHROG	UHGV-0017849_24	phrog_22905	79.9	2.6e-23	N/A	unknown function
UniRef90	UHGV-0017849_25	UniRef90_K8MR92	118.0	2.94e-31	RinA family phage transcriptional regulator	N/A
structural_annotation	UHGV-0017849_25	PF05263,TIGR01636	N/A	N/A	N/A	N/A
KOfam	UHGV-0017849_26	K07474	116.7	3.9e-34	xtmA; phage terminase small subunit	N/A
PHROG	UHGV-0017849_26	phrog_51	128.8	3.2e-38	terminase small subunit	head and packaging
UniRef90	UHGV-0017849_26	UniRef90_A0A0V8BLX9	281.0	0	Phage terminase small subunit	N/A
eggNOG-mapper	UHGV-0017849_26	1260356.D920_01729	153.0	2.8026e-45	Terminase small subunit	N/A
Pfam	UHGV-0017849_26	PF03592	N/A	N/A	Terminase small subunit	Terminase_2
COG	UHGV-0017849_26	COG3728	N/A	N/A	Phage terminase, small subunit	N/A
structural_annotation	UHGV-0017849_26	PF03592,COG3728	N/A	N/A	N/A	N/A
KOfam	UHGV-0017849_27	K06909	52.8	0.0000000000000053	xtmB; phage terminase large subunit	N/A
PHROG	UHGV-0017849_27	phrog_29775	211.4	0	N/A	unknown function
UniRef90	UHGV-0017849_27	UniRef90_A0A0B8R1H3	819.0	0	Large extracellular alpha-helical protein	N/A
eggNOG-mapper	UHGV-0017849_27	1229517.AMFD01000018_gene188	813.0	0	Phage terminase, large subunit, PBSX family	N/A
NCBIFam	UHGV-0017849_27	TIGR01547.1	N/A	N/A	PBSX family phage terminase large subunit	N/A
COG	UHGV-0017849_27	COG1783	N/A	N/A	Phage terminase large subunit	N/A
structural_annotation	UHGV-0017849_27	PF04466,PF20441,MF_04148,TIGR01547,COG1783	N/A	N/A	N/A	N/A
PHROG	UHGV-0017849_28	phrog_533	579.3	0	portal protein	head and packaging
UniRef90	UHGV-0017849_28	UniRef90_A0A0V8BM65	785.0	0	Phage minor capsid protein	N/A
eggNOG-mapper	UHGV-0017849_28	1229517.AMFD01000018_gene187	737.0	0	portal protein	N/A
Pfam	UHGV-0017849_28	PF05133	N/A	N/A	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
NCBIFam	UHGV-0017849_28	TIGR01542.1	N/A	N/A	phage portal protein	N/A
structural_annotation	UHGV-0017849_28	PF05133,MF_04120,TIGR01542,COG5511	N/A	N/A	N/A	N/A
PHROG	UHGV-0017849_29	phrog_581	337.2	0	minor head protein	head and packaging
UniRef90	UHGV-0017849_29	UniRef90_UPI001F30CE3A	697.0	0	phage minor capsid protein	N/A
eggNOG-mapper	UHGV-0017849_29	1229517.AMFD01000018_gene186	676.0	0	Phage minor capsid protein 2	N/A
Pfam	UHGV-0017849_29	PF06152	N/A	N/A	Phage minor capsid protein 2	Phage_min_cap2
Pfam	UHGV-0017849_29	PF15542	N/A	N/A	Bacterial toxin 50	Ntox50
PHROG	UHGV-0017849_31	phrog_194	101.6	9.2e-30	head scaffolding protein	head and packaging
UniRef90	UHGV-0017849_31	UniRef90_UPI0003B84097	276.0	0	phage scaffolding protein	N/A
eggNOG-mapper	UHGV-0017849_31	1262449.CP6013_3198	73.6	0.000000000000124	Phage minor structural protein GP20	N/A
Pfam	UHGV-0017849_31	PF06810	N/A	N/A	Phage minor structural protein GP20	Phage_GP20
structural_annotation	UHGV-0017849_31	PF06810	N/A	N/A	N/A	N/A
PHROG	UHGV-0017849_32	phrog_422	225.6	0	major head protein	head and packaging
UniRef90	UHGV-0017849_32	UniRef90_UPI00128E63DB	372.0	0	capsid protein	N/A
eggNOG-mapper	UHGV-0017849_32	768486.EHR_02620	325.0	0	N/A	N/A
structural_annotation	UHGV-0017849_32	PF21703,MF_04119,TIGR04387,COG4834	N/A	N/A	N/A	N/A
PHROG	UHGV-0017849_33	phrog_933	59.6	3.6e-17	N/A	unknown function
PHROG	UHGV-0017849_34	phrog_541	104.1	8.8e-31	head-tail adaptor	connector
UniRef90	UHGV-0017849_34	UniRef90_A0A0V8BM43	202.0	0	Protein gp8	N/A
eggNOG-mapper	UHGV-0017849_34	1229517.AMFD01000018_gene183	204.0	0	N/A	N/A
PHROG	UHGV-0017849_35	phrog_793	62.5	6.7e-18	head-tail adaptor	connector
UniRef90	UHGV-0017849_35	UniRef90_UPI001F06076B	163.0	0	minor capsid protein	N/A
eggNOG-mapper	UHGV-0017849_35	1229517.AMFD01000018_gene182	201.0	0	Minor capsid protein	N/A
Pfam	UHGV-0017849_35	PF10665	N/A	N/A	Minor capsid protein	Minor_capsid_1
structural_annotation	UHGV-0017849_35	PF10665,TIGR01563,COG5614	N/A	N/A	N/A	N/A
PHROG	UHGV-0017849_36	phrog_556	91.7	5.9e-27	minor head protein	head and packaging
UniRef90	UHGV-0017849_36	UniRef90_A0A0V8DV29	205.0	0	Phage minor capsid protein	N/A
eggNOG-mapper	UHGV-0017849_36	1229517.AMFD01000018_gene181	199.0	0	Minor capsid protein	N/A
Pfam	UHGV-0017849_36	PF11114	N/A	N/A	Minor capsid protein	Minor_capsid_2
structural_annotation	UHGV-0017849_36	PF11114,TIGR01725	N/A	N/A	N/A	N/A
PHROG	UHGV-0017849_37	phrog_913	137.1	5.79997e-41	minor head protein	head and packaging
UniRef90	UHGV-0017849_37	UniRef90_A0A0V8DU26	231.0	0	Phage minor capsid protein	N/A
eggNOG-mapper	UHGV-0017849_37	1229517.AMFD01000018_gene180	231.0	0	Minor capsid protein from bacteriophage	N/A
Pfam	UHGV-0017849_37	PF12691	N/A	N/A	Bacteriophage minor capsid protein	Minor_capsid_3
structural_annotation	UHGV-0017849_37	PF12691	N/A	N/A	N/A	N/A
PHROG	UHGV-0017849_38	phrog_820	119.6	1.5e-35	major tail protein	tail
UniRef90	UHGV-0017849_38	UniRef90_A0A0V8DTW6	258.0	0	Phage major tail protein	N/A
eggNOG-mapper	UHGV-0017849_38	1229517.AMFD01000018_gene179	249.0	0	domain, Protein	N/A
COG	UHGV-0017849_38	COG5492	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0017849_38	PF06199,TIGR02126,COG5437	N/A	N/A	N/A	N/A
PHROG	UHGV-0017849_39	phrog_7440	63.1	3.7e-18	major tail protein	tail
UniRef90	UHGV-0017849_39	UniRef90_UPI001F11BB11	218.0	0	fibronectin type III domain-containing protein	N/A
eggNOG-mapper	UHGV-0017849_39	1231377.C426_2218	152.0	0	N/A	N/A
structural_annotation	UHGV-0017849_39	PF21605	N/A	N/A	N/A	N/A
PHROG	UHGV-0017849_40	phrog_1061	66.2	5.8e-19	N/A	unknown function
eggNOG-mapper	UHGV-0017849_40	1450694.BTS2_2127	50.4	0.00000362	N/A	N/A
Pfam	UHGV-0017849_40	PF20378	N/A	N/A	N/A	DUF6673
structural_annotation	UHGV-0017849_40	PF10666	N/A	N/A	N/A	N/A
PHROG	UHGV-0017849_41	phrog_706	191.0	0	N/A	unknown function
UniRef90	UHGV-0017849_41	UniRef90_A0A0V8DUC6	296.0	0	N/A	N/A
eggNOG-mapper	UHGV-0017849_41	1229517.AMFD01000018_gene176	286.0	0	Bacteriophage Gp15 protein	N/A
Pfam	UHGV-0017849_41	PF06854	N/A	N/A	Bacteriophage Gp15 protein	Phage_Gp15
structural_annotation	UHGV-0017849_41	PF06854	N/A	N/A	N/A	N/A
PHROG	UHGV-0017849_42	phrog_5493	272.7	0	tail length tape measure protein	tail
UniRef90	UHGV-0017849_42	UniRef90_A0A0V8BM61	808.0	0	Phage minor tail protein	N/A
eggNOG-mapper	UHGV-0017849_42	1229517.AMFD01000018_gene175	696.0	0	phage tail tape measure protein	N/A
COG	UHGV-0017849_42	COG5283	N/A	N/A	Phage-related tail protein	N/A
structural_annotation	UHGV-0017849_42	PF20155,COG3941	N/A	N/A	N/A	N/A
PHROG	UHGV-0017849_43	phrog_33	80.4	3.4e-23	distal tail protein Dit	tail
UniRef90	UHGV-0017849_43	UniRef90_A0A0V8D739	390.0	0	Phage-related protein	N/A
eggNOG-mapper	UHGV-0017849_43	1231377.C426_0892	346.0	0	phage tail	N/A
NCBIFam	UHGV-0017849_43	TIGR01633.1	N/A	N/A	distal tail protein Dit	N/A
COG	UHGV-0017849_43	COG4722	N/A	N/A	Phage-related protein YomH	N/A
structural_annotation	UHGV-0017849_43	PF20195,TIGR01633,COG4722	N/A	N/A	N/A	N/A
PHROG	UHGV-0017849_44	phrog_1067	427.6	0	minor head protein	head and packaging
UniRef90	UHGV-0017849_44	UniRef90_V7ZLX3	1007.0	0	Peptidase S74 domain-containing protein	N/A
eggNOG-mapper	UHGV-0017849_44	1158601.I585_01146	858.0	0	Prophage endopeptidase tail	N/A
Pfam	UHGV-0017849_44	PF06605	N/A	N/A	Prophage endopeptidase tail	Prophage_tail
Pfam	UHGV-0017849_44	PF13884	N/A	N/A	Chaperone of endosialidase	Peptidase_S74
NCBIFam	UHGV-0017849_44	TIGR01665.1	N/A	N/A	phage tail spike protein	N/A
COG	UHGV-0017849_44	COG4926	N/A	N/A	Phage-related protein	N/A
structural_annotation	UHGV-0017849_44	PF14594,PF13884,TIGR01665,COG4926	N/A	N/A	N/A	N/A
PHROG	UHGV-0017849_45	phrog_10512	322.3	0	virion structural protein	head and packaging
UniRef90	UHGV-0017849_45	UniRef90_K2PK15	242.0	0	Prophage Lp1 protein 54	N/A
eggNOG-mapper	UHGV-0017849_45	1231377.C426_0890	242.0	0	N/A	N/A
Pfam	UHGV-0017849_45	PF10651	N/A	N/A	BppU N-terminal domain	BppU_N

All viral genomes

ID	Representative?	Length (bps)	% GC Content	CheckV Completeness	geNomad Score
UHGV-0017849	Yes	32,767	37	81	1