vOTU vOTU-099588

vOTU: vOTU-099588

Overview

Genome (FASTA) Annotation Track (GFF) Proteins (FASTA) Protein Annotation (TSV)

Cluster properties
vOTU ID	vOTU-099588
Number of genomes	1
Taxonomy (ICTV)	Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes
Taxonomy (UHGV)	vFAM-00003 → vOTU-099588
Host lineage
Host range breadth
Lifestyle	temperate (evidence: integrase)

Representative genome
Genome ID	UHGV-1515831
Biosample ID	SAMN04126236
Genome length (bp)	32,039 bps
CheckV completeness	50.99% (Medium-quality)
CDS count	43
CDS density	82.42%
tRNA count	0
Integrase	Yes
Viral confidence	Confident

Host assignment details
Assignment method
CRISPR-predicted host lineage	Total connections	Host agreement
PHIST-predicted host lineage	Total connections	Host agreement

Representative genome content

Select to view: Genome Viewer Functional Annotation

Genome view (completeness: 50.99)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
KOfam	UHGV-1515831_1	K14059	132.0	7.7e-39	int; integrase	N/A
PHROG	UHGV-1515831_1	phrog_1	139.4	3.30006e-41	integrase	integration and excision
UniRef90	UHGV-1515831_1	UniRef90_A0A133N4J1	185.0	0	Site-specific recombinase, phage integrase family	N/A
eggNOG-mapper	UHGV-1515831_1	1111134.HMPREF1253_0411	135.0	6.61e-34	Belongs to the 'phage' integrase family	N/A
Pfam	UHGV-1515831_1	PF00589	N/A	N/A	Phage integrase family	Phage_integrase
COG	UHGV-1515831_1	COG0582	N/A	N/A	Integrase/recombinase, includes phage integrase	N/A
structural_annotation	UHGV-1515831_1	PF00589,MF_01808,NF007246,COG4974	N/A	N/A	N/A	N/A
KOfam	UHGV-1515831_4	K22300	45.1	0.000000000002	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	N/A
PHROG	UHGV-1515831_4	phrog_3	40.3	0.00000000012	transcriptional repressor	transcription regulation
UniRef90	UHGV-1515831_4	UniRef90_A0A6N7W6K0	56.2	0.000000169	Helix-turn-helix domain-containing protein	N/A
Pfam	UHGV-1515831_4	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
COG	UHGV-1515831_4	COG1396	N/A	N/A	Transcriptional regulator, contains XRE-family HTH domain	N/A
PHROG	UHGV-1515831_5	phrog_5968	91.8	3.1e-27	replisome organizer	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1515831_5	UniRef90_UPI000DE2F474	124.0	1.25e-30	phage replisome organizer N-terminal domain-containing protein	N/A
eggNOG-mapper	UHGV-1515831_5	768706.Desor_0679	81.3	0.0000000000000048	N/A	N/A
Pfam	UHGV-1515831_5	PF09681	N/A	N/A	N-terminal phage replisome organiser (Phage_rep_org_N)	Phage_rep_org_N
NCBIFam	UHGV-1515831_5	TIGR01714.1	N/A	N/A	phage replisome organizer, putative, N-terminal region	N/A
KOfam	UHGV-1515831_6	K17680	91.5	6.6e-27	PEO1; twinkle protein [EC:5.6.2.3]	N/A
PHROG	UHGV-1515831_6	phrog_239	92.2	6.3e-27	DNA primase/helicase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1515831_6	UniRef90_A0A8J6J2A5	101.0	4.33e-20	AAA family ATPase	N/A
eggNOG-mapper	UHGV-1515831_6	1256908.HMPREF0373_00663	135.0	9.47e-33	N/A	N/A
Pfam	UHGV-1515831_6	PF06745	N/A	N/A	KaiC	ATPase
COG	UHGV-1515831_6	COG0305	N/A	N/A	Replicative DNA helicase	N/A
structural_annotation	UHGV-1515831_6	PF03796,MF_04154,NF006443,COG0305	N/A	N/A	N/A	N/A
PHROG	UHGV-1515831_8	phrog_36	48.8	0.00000000000014	transcriptional regulator	transcription regulation
COG	UHGV-1515831_8	COG1191	N/A	N/A	DNA-directed RNA polymerase specialized sigma subunit	N/A
PHROG	UHGV-1515831_14	phrog_244	109.4	3.3e-32	RusA-like Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1515831_14	UniRef90_F8WQ18	57.8	0.000000104	Resolvase	N/A
eggNOG-mapper	UHGV-1515831_14	1540091.A0A0A0RSK7_9CAUD	67.0	0.00000000000625	N/A	N/A
structural_annotation	UHGV-1515831_14	PF01870,MF_01490,NF040854,COG1591	N/A	N/A	N/A	N/A
PHROG	UHGV-1515831_22	phrog_309	130.8	6.5e-39	terminase small subunit	head and packaging
UniRef90	UHGV-1515831_22	UniRef90_UPI0007B4B4BF	115.0	1.53e-29	helix-turn-helix domain-containing protein	N/A
eggNOG-mapper	UHGV-1515831_22	226185.EF_2018	104.0	3.95e-26	transposase activity	N/A
COG	UHGV-1515831_22	COG2963	N/A	N/A	Transposase InsE and inactivated derivatives	N/A
structural_annotation	UHGV-1515831_22	PF07141	N/A	N/A	N/A	N/A
KOfam	UHGV-1515831_23	K06909	143.2	2.59941e-42	xtmB; phage terminase large subunit	N/A
PHROG	UHGV-1515831_23	phrog_10250	193.0	0	N/A	unknown function
UniRef90	UHGV-1515831_23	UniRef90_A0A1M6RNG9	557.0	0	Phage terminase, large subunit, PBSX family	N/A
eggNOG-mapper	UHGV-1515831_23	642492.Clole_2765	526.0	0	Phage terminase, large subunit, PBSX family	N/A
Pfam	UHGV-1515831_23	PF03237	N/A	N/A	Terminase large subunit, T4likevirus-type, N-terminal	Terminase_6N
Pfam	UHGV-1515831_23	PF17289	N/A	N/A	Terminase RNaseH-like domain	Terminase_6C
NCBIFam	UHGV-1515831_23	TIGR01547.1	N/A	N/A	PBSX family phage terminase large subunit	N/A
COG	UHGV-1515831_23	COG1783	N/A	N/A	Phage terminase large subunit	N/A
structural_annotation	UHGV-1515831_23	PF04466,PF20454,MF_04148,TIGR01547,COG1783	N/A	N/A	N/A	N/A
PHROG	UHGV-1515831_24	phrog_64	324.8	0	portal protein	head and packaging
UniRef90	UHGV-1515831_24	UniRef90_A0A173W966	386.0	0	Phage portal protein, SPP1 family	N/A
eggNOG-mapper	UHGV-1515831_24	877414.ATWA01000001_gene907	301.0	0	Phage portal protein, SPP1 family	N/A
Pfam	UHGV-1515831_24	PF05133	N/A	N/A	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
NCBIFam	UHGV-1515831_24	TIGR01538.1	N/A	N/A	phage portal protein	N/A
structural_annotation	UHGV-1515831_24	PF05133,MF_04120,TIGR01538,COG5518	N/A	N/A	N/A	N/A
PHROG	UHGV-1515831_25	phrog_172	93.5	2.6e-27	head scaffolding protein	head and packaging
UniRef90	UHGV-1515831_25	UniRef90_UPI001E4D8165	92.0	9.69e-20	N/A	N/A
eggNOG-mapper	UHGV-1515831_25	1111134.HMPREF1253_1185	65.9	0.000000000113	N/A	N/A
Pfam	UHGV-1515831_25	PF14265	N/A	N/A	N/A	DUF4355
structural_annotation	UHGV-1515831_25	PF14265	N/A	N/A	N/A	N/A
PHROG	UHGV-1515831_26	phrog_267	173.2	0	major head protein	head and packaging
UniRef90	UHGV-1515831_26	UniRef90_F8UBB7	236.0	0	p22 coat protein	N/A
eggNOG-mapper	UHGV-1515831_26	673376.F2VHW8_9CAUD	228.0	0	viral capsid	N/A
structural_annotation	UHGV-1515831_26	PF19821,MF_04119,TIGR04387,COG4653	N/A	N/A	N/A	N/A
Pfam	UHGV-1515831_29	PF04883	N/A	N/A	Bacteriophage HK97-gp10, putative tail-component	HK97-gp10_like
eggNOG-mapper	UHGV-1515831_30	1121947.AUHK01000002_gene940	55.5	0.0000000326	N/A	N/A
structural_annotation	UHGV-1515831_30	PF05657	N/A	N/A	N/A	N/A
PHROG	UHGV-1515831_31	phrog_158	62.4	1.1e-17	major tail protein	tail
eggNOG-mapper	UHGV-1515831_31	1209989.TepiRe1_1157	70.1	0.000000000000202	Phage tail tube protein, TTP	N/A
Pfam	UHGV-1515831_31	PF08813	N/A	N/A	Phage tail tube protein, TTP	Phage_tail_3
structural_annotation	UHGV-1515831_31	PF16463,TIGR02241,COG5437	N/A	N/A	N/A	N/A
PHROG	UHGV-1515831_34	phrog_1535	236.5	0	tail length tape measure protein	tail
UniRef90	UHGV-1515831_34	UniRef90_A0A3D9GHV1	241.0	0	Phage-related protein	N/A
eggNOG-mapper	UHGV-1515831_34	1121947.AUHK01000002_gene944	274.0	0	Phage tail tape measure protein, TP901 family	N/A
COG	UHGV-1515831_34	COG3941	N/A	N/A	Phage tail tape-measure protein, controls tail length	N/A
structural_annotation	UHGV-1515831_34	PF20155,TIGR01760,COG3941	N/A	N/A	N/A	N/A
PHROG	UHGV-1515831_35	phrog_1194	79.7	3.3e-23	N/A	unknown function
eggNOG-mapper	UHGV-1515831_35	1229517.AMFD01000023_gene1305	59.3	0.0000000011	N/A	N/A
Pfam	UHGV-1515831_35	PF20458	N/A	N/A	N/A	DUF6711
structural_annotation	UHGV-1515831_35	PF20458,TIGR02126,COG3499	N/A	N/A	N/A	N/A
KOfam	UHGV-1515831_37	K19721	131.1	1.2e-39	COL5AS; collagen type V/XI/XXIV/XXVII, alpha	N/A
PHROG	UHGV-1515831_37	phrog_32409	51.0	0	tail fiber protein	tail
eggNOG-mapper	UHGV-1515831_37	563192.HMPREF0179_00194	81.3	0.000000000000301	N/A	N/A
Pfam	UHGV-1515831_37	PF18931	N/A	N/A	N/A	DUF5680
Pfam	UHGV-1515831_37	PF17891	N/A	N/A	Mu-like prophage FluMu N-terminal domain	FluMu_N
Pfam	UHGV-1515831_37	PF01391	N/A	N/A	Collagen triple helix repeat (20 copies)	Collagen
Pfam	UHGV-1515831_38	PF13306	N/A	N/A	BspA type Leucine rich repeat region (6 copies)	LRR_5
PHROG	UHGV-1515831_40	phrog_1863	43.3	0.0000000000047	N/A	unknown function
eggNOG-mapper	UHGV-1515831_40	718252.FP2_04900	57.8	0.00000000153	N/A	N/A
PHROG	UHGV-1515831_41	phrog_881	46.1	0.00000000000068	holin	lysis
eggNOG-mapper	UHGV-1515831_41	525919.Apre_0865	50.8	0.000000124	Putative phage holin Dp-1	N/A
Pfam	UHGV-1515831_41	PF16938	N/A	N/A	Putative phage holin Dp-1	Phage_holin_Dp1
structural_annotation	UHGV-1515831_41	PF16938	N/A	N/A	N/A	N/A
KOfam	UHGV-1515831_43	K01447	46.1	0.0000000000009	xlyAB; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]	N/A
PHROG	UHGV-1515831_43	phrog_7698	159.8	0	endolysin	lysis
UniRef90	UHGV-1515831_43	UniRef90_UPI00037C6474	254.0	0	N-acetylmuramoyl-L-alanine amidase	N/A
eggNOG-mapper	UHGV-1515831_43	938288.HG326225_gene1127	254.0	0	Cpl-7 lysozyme C-terminal domain protein	N/A
Pfam	UHGV-1515831_43	PF01510	N/A	N/A	N-acetylmuramoyl-L-alanine amidase	Amidase_2
Pfam	UHGV-1515831_43	PF08239	N/A	N/A	Bacterial SH3 domain	SH3_3
COG	UHGV-1515831_43	COG0860	N/A	N/A	N-acetylmuramoyl-L-alanine amidase	N/A
structural_annotation	UHGV-1515831_43	PF01510,PF18342,MF_04111,NF008758,COG3023,COG3807	N/A	N/A	N/A	N/A

All viral genomes

ID	Representative?	Length (bps)	% GC Content	CheckV Completeness	geNomad Score
UHGV-1515831	Yes	32,039	34	51	1