vOTU vOTU-099897

vOTU: vOTU-099897

Overview

Genome (FASTA) Annotation Track (GFF) Proteins (FASTA) Protein Annotation (TSV)

Cluster properties
vOTU ID	vOTU-099897
Number of genomes	2
Taxonomy (ICTV)	Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes
Taxonomy (UHGV)	vFAM-00007 → vSUBFAM-00048 → vGENUS-00024 → vOTU-099897
Host lineage	Bacteria → Firmicutes_A → Clostridia → Lachnospirales → Lachnospiraceae → Agathobacter → Agathobacter rectalis
Host range breadth	Species
Lifestyle	temperate (evidence: BACPHLIP)

Representative genome
Genome ID	UHGV-1531575
Biosample ID	SAMEA4378260
Genome length (bp)	29,592 bps
CheckV completeness	50.10% (Medium-quality)
CDS count	55
CDS density	94.42%
tRNA count	0
Integrase	No
Viral confidence	Confident

Host assignment details
Assignment method	CRISPR
CRISPR-predicted host lineage	Bacteria → Firmicutes_A → Clostridia → Lachnospirales → Lachnospiraceae → Agathobacter → Agathobacter rectalis	Total connections	2399	Host agreement	80.78
PHIST-predicted host lineage		Total connections		Host agreement

Representative genome content

Select to view: Genome Viewer Functional Annotation

Genome view (completeness: 50.1)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
KOfam	UHGV-1531575_1	K14059	252.5	0	int; integrase	N/A
PHROG	UHGV-1531575_1	phrog_1	206.9	0	integrase	integration and excision
UniRef90	UHGV-1531575_1	UniRef90_A0A412RQS9	757.0	0	Site-specific integrase	N/A
eggNOG-mapper	UHGV-1531575_1	1235799.C818_02711	368.0	0	Phage integrase family	N/A
Pfam	UHGV-1531575_1	PF02920	N/A	N/A	DNA binding domain of tn916 integrase	Integrase_DNA
Pfam	UHGV-1531575_1	PF14659	N/A	N/A	Phage integrase, N-terminal SAM-like domain	Phage_int_SAM_3
Pfam	UHGV-1531575_1	PF00589	N/A	N/A	Phage integrase family	Phage_integrase
COG	UHGV-1531575_1	COG0582	N/A	N/A	Integrase/recombinase, includes phage integrase	N/A
structural_annotation	UHGV-1531575_1	PF00589,PF14659,MF_02055,TIGR02224,COG4974	N/A	N/A	N/A	N/A
PHROG	UHGV-1531575_2	phrog_16129	61.3	5e-18	excisionase	integration and excision
UniRef90	UHGV-1531575_2	UniRef90_A0A412RR26	248.0	0	HTH luxR-type domain-containing protein	N/A
eggNOG-mapper	UHGV-1531575_2	1121296.JONJ01000009_gene671	89.4	1.31e-21	Excisionase from transposon Tn916	N/A
Pfam	UHGV-1531575_2	PF00196	N/A	N/A	Bacterial regulatory proteins, luxR family	GerE
Pfam	UHGV-1531575_2	PF09035	N/A	N/A	Excisionase from transposon Tn916	Tn916-Xis
NCBIFam	UHGV-1531575_2	TIGR01764.1	N/A	N/A	excisionase family DNA-binding protein	N/A
structural_annotation	UHGV-1531575_2	PF09035,PF00196,MF_00674,NF033787,NF008895,COG2771	N/A	N/A	N/A	N/A
structural_annotation	UHGV-1531575_4	PF09889,MF_00649	N/A	N/A	N/A	N/A
KOfam	UHGV-1531575_5	K00558	41.8	0.0000000000087	DNMT1, dcm; DNA (cytosine-5)-methyltransferase 1 [EC:2.1.1.37]	N/A
PHROG	UHGV-1531575_5	phrog_16427	70.3	2.4e-20	DNA methyltransferase	other
UniRef90	UHGV-1531575_5	UniRef90_A0A8D9UIK6	329.0	0	Cytosine specific methyltransferase	N/A
eggNOG-mapper	UHGV-1531575_5	1356854.N007_05330	90.5	5.07e-18	C-5 cytosine-specific DNA methylase	N/A
PADLOC	UHGV-1531575_5	oMTase_00023	60.7	1.2e-17	orphan methyltransferase	RM
Pfam	UHGV-1531575_5	PF00145	N/A	N/A	C-5 cytosine-specific DNA methylase	DNA_methylase
COG	UHGV-1531575_5	COG0270	N/A	N/A	DNA-cytosine methylase	N/A
KOfam	UHGV-1531575_8	K00558	73.3	1.9e-21	DNMT1, dcm; DNA (cytosine-5)-methyltransferase 1 [EC:2.1.1.37]	N/A
PHROG	UHGV-1531575_8	phrog_116	75.2	6.4e-22	DNA methyltransferase	other
UniRef90	UHGV-1531575_8	UniRef90_A0A8D9UIR1	334.0	0	Cytosine specific methyltransferase	N/A
eggNOG-mapper	UHGV-1531575_8	397290.C810_05213	173.0	0	C-5 cytosine-specific DNA methylase	N/A
PADLOC	UHGV-1531575_8	MTase_II_00174	88.9	8.5e-26	Type II methyltransferase	RM
Pfam	UHGV-1531575_8	PF00145	N/A	N/A	C-5 cytosine-specific DNA methylase	DNA_methylase
COG	UHGV-1531575_8	COG0270	N/A	N/A	DNA-cytosine methylase	N/A
structural_annotation	UHGV-1531575_8	PF00145	N/A	N/A	N/A	N/A
UniRef90	UHGV-1531575_9	UniRef90_UPI000E420503	114.0	9.06e-30	DNA cytosine methyltransferase	N/A
eggNOG-mapper	UHGV-1531575_9	397290.C810_05213	129.0	1.91e-34	C-5 cytosine-specific DNA methylase	N/A
Pfam	UHGV-1531575_9	PF00145	N/A	N/A	C-5 cytosine-specific DNA methylase	DNA_methylase
COG	UHGV-1531575_9	COG0270	N/A	N/A	DNA-cytosine methylase	N/A
KOfam	UHGV-1531575_10	K00571	104.5	1.3e-30	E2.1.1.72; site-specific DNA-methyltransferase (adenine-specific) [EC:2.1.1.72]	N/A
PHROG	UHGV-1531575_10	phrog_23224	203.0	0	DNA methyltransferase	other
UniRef90	UHGV-1531575_10	UniRef90_UPI000462F5E4	357.0	0	site-specific DNA-methyltransferase	N/A
eggNOG-mapper	UHGV-1531575_10	1345695.CLSA_c30050	249.0	0	DNA methylase	N/A
PADLOC	UHGV-1531575_10	MTase_II_00172	97.1	2.7e-30	Type II methyltransferase	RM
Pfam	UHGV-1531575_10	PF01555	N/A	N/A	DNA methylase	N6_N4_Mtase
COG	UHGV-1531575_10	COG0863	N/A	N/A	DNA modification methylase	N/A
structural_annotation	UHGV-1531575_10	PF01555,NF010253,COG0863	N/A	N/A	N/A	N/A
PHROG	UHGV-1531575_12	phrog_10714	44.3	0.0000000000019	N/A	unknown function
PHROG	UHGV-1531575_13	phrog_8684	77.7	5e-23	N/A	unknown function
UniRef90	UHGV-1531575_13	UniRef90_A0A412RQU3	182.0	0	YopX domain-containing protein	N/A
eggNOG-mapper	UHGV-1531575_13	742735.HMPREF9467_00920	84.0	5.62e-19	YopX protein	N/A
Pfam	UHGV-1531575_13	PF09643	N/A	N/A	YopX protein	YopX
structural_annotation	UHGV-1531575_13	PF09643,TIGR01671	N/A	N/A	N/A	N/A
UniRef90	UHGV-1531575_15	UniRef90_A0A0F0C7A4	81.3	6.95e-16	N/A	N/A
eggNOG-mapper	UHGV-1531575_15	397290.C810_01492	68.2	0.00000000000536	N/A	N/A
PHROG	UHGV-1531575_21	phrog_9804	174.0	0	N/A	unknown function
UniRef90	UHGV-1531575_21	UniRef90_A0A412RQW3	305.0	0	Inhibitor_G39P domain-containing protein	N/A
eggNOG-mapper	UHGV-1531575_21	1410650.JHWL01000003_gene2847	141.0	1.05e-39	Loader and inhibitor of phage G40P	N/A
Pfam	UHGV-1531575_21	PF11417	N/A	N/A	Loader and inhibitor of phage G40P	Inhibitor_G39P
structural_annotation	UHGV-1531575_21	PF11417	N/A	N/A	N/A	N/A
PHROG	UHGV-1531575_22	phrog_8489	178.7	0	DnaD-like helicase loader	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1531575_22	UniRef90_UPI001BB8B78A	202.0	0	Phage replication initiation protein	N/A
eggNOG-mapper	UHGV-1531575_22	1196322.A370_02071	135.0	1.05e-35	DnaD domain protein	N/A
COG	UHGV-1531575_22	COG3935	N/A	N/A	DNA replication protein DnaD	N/A
PHROG	UHGV-1531575_23	phrog_2245	79.9	3.3e-23	nucleoside triphosphate pyrophosphohydrolase	other
UniRef90	UHGV-1531575_23	UniRef90_A0A373NRP8	101.0	3.63e-26	MazG domain-containing protein	N/A
eggNOG-mapper	UHGV-1531575_23	326426.Bbr_0313	69.3	0.000000000000408	N/A	N/A
structural_annotation	UHGV-1531575_23	PF12643,MF_01020,TIGR03188,COG0140	N/A	N/A	N/A	N/A
PHROG	UHGV-1531575_26	phrog_19106	252.2	0	N/A	unknown function
UniRef90	UHGV-1531575_26	UniRef90_A0A412RQV5	337.0	0	GIY-YIG nuclease family protein	N/A
eggNOG-mapper	UHGV-1531575_26	658655.HMPREF0988_00875	202.0	0	N/A	N/A
structural_annotation	UHGV-1531575_26	TIGR01453	N/A	N/A	N/A	N/A
PHROG	UHGV-1531575_27	phrog_20593	80.7	1.1e-23	N/A	unknown function
Pfam	UHGV-1531575_28	PF01369	N/A	N/A	Sec7 domain	Sec7
KOfam	UHGV-1531575_29	K03111	111.1	1.6e-32	ssb; single-strand DNA-binding protein	N/A
PHROG	UHGV-1531575_29	phrog_44	121.9	5.6e-36	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1531575_29	UniRef90_A0A1I6JG45	159.0	0	Single-stranded DNA-binding protein	N/A
eggNOG-mapper	UHGV-1531575_29	1235793.C809_02091	157.0	0	Single-strand binding protein family	N/A
Pfam	UHGV-1531575_29	PF00436	N/A	N/A	Single-strand binding protein family	SSB
NCBIFam	UHGV-1531575_29	TIGR00621.2	N/A	N/A	single-stranded DNA-binding protein	N/A
COG	UHGV-1531575_29	COG0629	N/A	N/A	Single-stranded DNA-binding protein	N/A
HAMAP	UHGV-1531575_29	MF_00984	N/A	N/A	Single-stranded DNA-binding protein	N/A
structural_annotation	UHGV-1531575_29	PF00436,MF_00984,NF005580,COG0629	N/A	N/A	N/A	N/A
PHROG	UHGV-1531575_30	phrog_392	154.0	1.4013e-45	metal-dependent hydrolase	other
UniRef90	UHGV-1531575_30	UniRef90_A0A412RQX2	418.0	0	MBL fold metallo-hydrolase	N/A
eggNOG-mapper	UHGV-1531575_30	397290.C810_01486	153.0	3.57331e-43	May be involved in the transport of PQQ or its precursor to the periplasm	N/A
dbAPIS	UHGV-1531575_30	APIS058	N/A	N/A	N/A	N/A
COG	UHGV-1531575_30	COG1235	N/A	N/A	Phosphoribosyl 1,2-cyclic phosphate phosphodiesterase	N/A
structural_annotation	UHGV-1531575_30	PF02112,MF_01818,NF041851,COG1234	N/A	N/A	N/A	N/A
PHROG	UHGV-1531575_31	phrog_9822	174.2	0	N/A	unknown function
PHROG	UHGV-1531575_32	phrog_25456	82.1	4.5e-24	N/A	unknown function
PHROG	UHGV-1531575_33	phrog_10056	180.0	0	RecT-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1531575_33	UniRef90_A0A412RR22	483.0	0	Phage recombination protein Bet	N/A
eggNOG-mapper	UHGV-1531575_33	397290.C810_01467	322.0	0	Phage recombination protein Bet	N/A
Pfam	UHGV-1531575_33	PF03837	N/A	N/A	RecT family	RecT
NCBIFam	UHGV-1531575_33	TIGR01913.1	N/A	N/A	phage recombination protein Bet	N/A
COG	UHGV-1531575_33	COG3723	N/A	N/A	Recombinational DNA repair protein RecT	N/A
structural_annotation	UHGV-1531575_33	PF03837,TIGR01913,COG3723	N/A	N/A	N/A	N/A
PHROG	UHGV-1531575_35	phrog_2164	94.3	5.8e-28	N/A	unknown function
KOfam	UHGV-1531575_36	K19171	71.1	9.9e-21	dndD; DNA sulfur modification protein DndD	N/A
PHROG	UHGV-1531575_36	phrog_77	151.6	5.60519e-45	SbcC-like subunit of palindrome specific endonuclease	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1531575_36	UniRef90_A0A412RQV0	892.0	0	AAA_23 domain-containing protein	N/A
eggNOG-mapper	UHGV-1531575_36	397290.C810_01461	375.0	0	nuclear chromosome segregation	N/A
COG	UHGV-1531575_36	COG1196	N/A	N/A	Chromosome segregation ATPase Smc	N/A
structural_annotation	UHGV-1531575_36	PF02463,MF_00449,NF041034,COG0419	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-1531575_39	742765.HMPREF9457_03017	105.0	5.81e-25	peptidase	N/A
COG	UHGV-1531575_39	COG4942	N/A	N/A	Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB	N/A
KOfam	UHGV-1531575_40	K07741	175.0	0	antB; anti-repressor protein	N/A
PHROG	UHGV-1531575_40	phrog_63	122.3	4.6e-36	anti-repressor Ant	transcription regulation
UniRef90	UHGV-1531575_40	UniRef90_UPI001BBFD8A7	322.0	0	Phage antirepressor KilAC domain-containing protein	N/A
eggNOG-mapper	UHGV-1531575_40	658655.HMPREF0988_02592	247.0	0	AntA/AntB antirepressor	N/A
Pfam	UHGV-1531575_40	PF08346	N/A	N/A	AntA/AntB antirepressor	AntA
Pfam	UHGV-1531575_40	PF03374	N/A	N/A	Phage antirepressor protein KilAC domain	ANT
COG	UHGV-1531575_40	COG3561	N/A	N/A	Phage anti-repressor protein Ant	N/A
structural_annotation	UHGV-1531575_40	PF03374,PF08346,TIGR02681,COG3645,COG3561	N/A	N/A	N/A	N/A
UniRef90	UHGV-1531575_44	UniRef90_A0A412RQX5	141.0	1.24996e-42	XRE family transcriptional regulator	N/A
eggNOG-mapper	UHGV-1531575_44	1232449.BAHV02000016_gene1846	65.1	0.00000000000617	Peptidase S24-like	N/A
Pfam	UHGV-1531575_44	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
COG	UHGV-1531575_44	COG1974	N/A	N/A	SOS-response transcriptional repressor LexA (RecA-mediated autopeptidase)	N/A
structural_annotation	UHGV-1531575_44	PF01381,NF041951,COG1396	N/A	N/A	N/A	N/A
KOfam	UHGV-1531575_45	K22300	53.9	0.0000000000000039	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	N/A
PHROG	UHGV-1531575_45	phrog_2967	57.4	3e-16	transcriptional regulator	transcription regulation
UniRef90	UHGV-1531575_45	UniRef90_A0A412RR31	215.0	0	Helix-turn-helix domain-containing protein	N/A
eggNOG-mapper	UHGV-1531575_45	1304866.K413DRAFT_0834	88.2	3.9e-21	PFAM helix-turn-helix domain protein	N/A
Pfam	UHGV-1531575_45	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
COG	UHGV-1531575_45	COG1974	N/A	N/A	SOS-response transcriptional repressor LexA (RecA-mediated autopeptidase)	N/A
structural_annotation	UHGV-1531575_45	PF12844,NF041951,COG1476	N/A	N/A	N/A	N/A
PHROG	UHGV-1531575_46	phrog_3845	47.0	0.00000000000046	N/A	unknown function
PHROG	UHGV-1531575_48	phrog_806	41.6	0.000000000011	N/A	unknown function
Pfam	UHGV-1531575_48	PF11611	N/A	N/A	N/A	DUF4352
structural_annotation	UHGV-1531575_48	PF11611,MF_00791,NF003967,COG2967	N/A	N/A	N/A	N/A
UniRef90	UHGV-1531575_49	UniRef90_A0A349YRM6	57.0	0.000000000675	XkdX family protein	N/A
eggNOG-mapper	UHGV-1531575_49	411468.CLOSCI_01507	49.7	0.0000000899	Phage uncharacterised protein (Phage_XkdX)	N/A
Pfam	UHGV-1531575_49	PF09693	N/A	N/A	Phage uncharacterised protein (Phage_XkdX)	Phage_XkdX
structural_annotation	UHGV-1531575_49	PF09693,TIGR01669	N/A	N/A	N/A	N/A
PHROG	UHGV-1531575_50	phrog_20201	52.1	0.000000000000013	N/A	unknown function
PHROG	UHGV-1531575_51	phrog_5302	317.6	0	tail protein	tail
UniRef90	UHGV-1531575_51	UniRef90_A0A345BPB9	265.0	0	Lectin	N/A
eggNOG-mapper	UHGV-1531575_51	428125.CLOLEP_01426	316.0	0	N/A	N/A
structural_annotation	UHGV-1531575_51	COG1262	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-1531575_52	476272.RUMHYD_01994	66.2	0.000000000181	N/A	N/A
Pfam	UHGV-1531575_52	PF11839	N/A	N/A	Alanine-zipper, major outer membrane lipoprotein	Alanine_zipper
PHROG	UHGV-1531575_53	phrog_6616	508.0	0	tail protein	tail
UniRef90	UHGV-1531575_53	UniRef90_A0A412RR71	1002.0	0	Tail fiber domain-containing protein	N/A
eggNOG-mapper	UHGV-1531575_53	476272.RUMHYD_01992	356.0	0	N/A	N/A
structural_annotation	UHGV-1531575_53	PF05113,PF18957,NF033848,NF038186,COG4379,COG5513	N/A	N/A	N/A	N/A
PHROG	UHGV-1531575_54	phrog_1194	122.4	1.9e-36	N/A	unknown function
eggNOG-mapper	UHGV-1531575_54	86416.Clopa_0588	85.1	8.19e-20	N/A	N/A
Pfam	UHGV-1531575_54	PF20458	N/A	N/A	N/A	DUF6711
structural_annotation	UHGV-1531575_54	PF20458,TIGR02126,COG3499	N/A	N/A	N/A	N/A
PHROG	UHGV-1531575_55	phrog_11489	86.1	3.1e-25	N/A	unknown function
eggNOG-mapper	UHGV-1531575_55	1046629.Ssal_01275	68.6	0.00000000122	Catalyzes the oxidation of 3-carboxy-2-hydroxy-4- methylpentanoate (3-isopropylmalate) to 3-carboxy-4-methyl-2- oxopentanoate. The product decarboxylates to 4-methyl-2 oxopentanoate	N/A
COG	UHGV-1531575_55	COG0473	N/A	N/A	Isocitrate/isopropylmalate dehydrogenase	N/A

All viral genomes

ID	Representative?	Length (bps)	% GC Content	CheckV Completeness	geNomad Score
UHGV-1531575	Yes	29,592	38	50	1
UHGV-0115615	No	29,268	38	50	1