vOTU vOTU-100392

vOTU: vOTU-100392

Overview

Genome (FASTA) Annotation Track (GFF) Proteins (FASTA) Protein Annotation (TSV)

Cluster properties
vOTU ID	vOTU-100392
Number of genomes	1
Taxonomy (ICTV)	Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes
Taxonomy (UHGV)	vFAM-00003 → vSUBFAM-00316 → vGENUS-01765 → vOTU-100392
Host lineage	Bacteria → Firmicutes_A → Clostridia → Oscillospirales → Ruminococcaceae → Gemmiger → Gemmiger qucibialis
Host range breadth	Species
Lifestyle	temperate (evidence: BACPHLIP)

Representative genome
Genome ID	UHGV-0145808
Biosample ID	SAMN06018978
Genome length (bp)	29,241 bps
CheckV completeness	76.12% (Medium-quality)
CDS count	52
CDS density	91.63%
tRNA count	1
Integrase	No
Viral confidence	Confident

Host assignment details
Assignment method	PHIST
CRISPR-predicted host lineage	Bacteria → Firmicutes_A → Clostridia → Oscillospirales → Ruminococcaceae → Gemmiger → Gemmiger qucibialis	Total connections	82	Host agreement	95.12
PHIST-predicted host lineage	Bacteria → Firmicutes_A → Clostridia → Oscillospirales → Ruminococcaceae → Gemmiger → Gemmiger qucibialis	Total connections	645	Host agreement	98.45

Representative genome content

Select to view: Genome Viewer Functional Annotation

Genome view (completeness: 76.12)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
KOfam	UHGV-0145808_1	K22300	40.9	0.000000000038	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	N/A
PHROG	UHGV-0145808_1	phrog_2439	41.6	0.000000000014	transcriptional regulator	transcription regulation
UniRef90	UHGV-0145808_1	UniRef90_A0A6N2UL50	88.6	1.57e-21	Helix-turn-helix	N/A
eggNOG-mapper	UHGV-0145808_1	1504823.CCMM01000008_gene1079	62.4	0.00000000000411	sequence-specific DNA binding	N/A
Pfam	UHGV-0145808_1	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
COG	UHGV-0145808_1	COG1396	N/A	N/A	Transcriptional regulator, contains XRE-family HTH domain	N/A
structural_annotation	UHGV-0145808_1	PF01381,NF041951,COG1476	N/A	N/A	N/A	N/A
KOfam	UHGV-0145808_2	K22300	54.4	0.0000000000000029	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	N/A
PHROG	UHGV-0145808_2	phrog_2967	64.4	1.7e-18	transcriptional regulator	transcription regulation
UniRef90	UHGV-0145808_2	UniRef90_A0A412UNH6	81.3	1.88e-17	XRE family transcriptional regulator	N/A
eggNOG-mapper	UHGV-0145808_2	911104.AEKT01000001_gene15	68.9	0.000000000000204	Cro/C1-type HTH DNA-binding domain	N/A
Pfam	UHGV-0145808_2	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
COG	UHGV-0145808_2	COG1974	N/A	N/A	SOS-response transcriptional repressor LexA (RecA-mediated autopeptidase)	N/A
structural_annotation	UHGV-0145808_2	PF01381,MF_00535,NF041951,COG3655	N/A	N/A	N/A	N/A
PHROG	UHGV-0145808_3	phrog_87	41.8	0.000000000012	metallo-protease	other
UniRef90	UHGV-0145808_3	UniRef90_UPI001C3AA0FC	129.0	9.53e-36	ImmA/IrrE family metallo-endopeptidase	N/A
eggNOG-mapper	UHGV-0145808_3	663278.Ethha_2376	89.0	9.64e-21	N/A	N/A
structural_annotation	UHGV-0145808_3	PF06114,COG2856	N/A	N/A	N/A	N/A
KOfam	UHGV-0145808_4	K19370	42.7	0.0000000000057	DNAJC22; DnaJ homolog subfamily C member 22	N/A
PHROG	UHGV-0145808_4	phrog_10292	60.6	1.7e-18	N/A	unknown function
UniRef90	UHGV-0145808_4	UniRef90_UPI001916763D	121.0	1.4e-32	TM2 domain-containing protein	N/A
eggNOG-mapper	UHGV-0145808_4	665956.HMPREF1032_00562	108.0	3.78e-28	TM2 domain	N/A
Pfam	UHGV-0145808_4	PF13248	N/A	N/A	zinc-ribbon domain	zf-ribbon_3
Pfam	UHGV-0145808_4	PF05154	N/A	N/A	TM2 domain	TM2
COG	UHGV-0145808_4	COG2314	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0145808_4	PF05154,PF12773,MF_00788,NF003161	N/A	N/A	N/A	N/A
KOfam	UHGV-0145808_5	K14059	194.0	0	int; integrase	N/A
PHROG	UHGV-0145808_5	phrog_1	197.3	0	integrase	integration and excision
UniRef90	UHGV-0145808_5	UniRef90_UPI00195B6EEA	458.0	0	site-specific integrase	N/A
eggNOG-mapper	UHGV-0145808_5	643648.Slip_1975	181.0	0	Belongs to the 'phage' integrase family	N/A
Pfam	UHGV-0145808_5	PF14659	N/A	N/A	Phage integrase, N-terminal SAM-like domain	Phage_int_SAM_3
Pfam	UHGV-0145808_5	PF00589	N/A	N/A	Phage integrase family	Phage_integrase
COG	UHGV-0145808_5	COG4974	N/A	N/A	Site-specific recombinase XerD	N/A
structural_annotation	UHGV-0145808_5	PF00589,PF14659,MF_02055,TIGR02224,COG4974	N/A	N/A	N/A	N/A
PHROG	UHGV-0145808_6	phrog_1129	60.8	1.9e-17	holin	lysis
UniRef90	UHGV-0145808_6	UniRef90_A0A367FT42	166.0	0	Enolase	N/A
eggNOG-mapper	UHGV-0145808_6	693746.OBV_13280	112.0	2.5e-31	Phage holin family Hol44, in holin superfamily V	N/A
Pfam	UHGV-0145808_6	PF16079	N/A	N/A	Phage holin family Hol44, in holin superfamily V	Phage_holin_5_2
structural_annotation	UHGV-0145808_6	PF06946	N/A	N/A	N/A	N/A
PHROG	UHGV-0145808_7	phrog_1863	75.9	3.1e-22	N/A	unknown function
eggNOG-mapper	UHGV-0145808_7	693746.OBV_18260	114.0	3.86e-32	N/A	N/A
KOfam	UHGV-0145808_8	K07273	184.0	0	acm; lysozyme	N/A
PHROG	UHGV-0145808_8	phrog_291	159.3	0	endolysin	lysis
UniRef90	UHGV-0145808_8	UniRef90_A0A367G061	530.0	0	Peptidase_M23 domain-containing protein (Fragment)	N/A
eggNOG-mapper	UHGV-0145808_8	411471.SUBVAR_06927	310.0	0	Glycosyl hydrolases family 25	N/A
Pfam	UHGV-0145808_8	PF01551	N/A	N/A	Peptidase family M23	Peptidase_M23
Pfam	UHGV-0145808_8	PF01183	N/A	N/A	Glycosyl hydrolases family 25	Glyco_hydro_25
COG	UHGV-0145808_8	COG3757	N/A	N/A	Lyzozyme M1 (1,4-beta-N-acetylmuramidase), GH25 family	N/A
structural_annotation	UHGV-0145808_8	PF01551,PF01183,NF040883,COG0739,COG3757	N/A	N/A	N/A	N/A
PHROG	UHGV-0145808_9	phrog_24267	65.4	1.2e-18	N/A	unknown function
eggNOG-mapper	UHGV-0145808_9	508419.F8J176_9CAUD	118.0	1.12e-26	peptidoglycan catabolic process	N/A
Pfam	UHGV-0145808_9	PF11133	N/A	N/A	Head fiber protein	Phage_head_fibr
Pfam	UHGV-0145808_9	PF03406	N/A	N/A	Phage tail fibre repeat	Phage_fiber_2
PHROG	UHGV-0145808_10	phrog_19111	48.2	0.000000000000047	N/A	unknown function
eggNOG-mapper	UHGV-0145808_10	1232443.BAIA02000078_gene14	73.9	0.00000000000211	nuclear chromosome segregation	N/A
COG	UHGV-0145808_10	COG1196	N/A	N/A	Chromosome segregation ATPase Smc	N/A
PHROG	UHGV-0145808_12	phrog_13589	183.9	0	N/A	unknown function
eggNOG-mapper	UHGV-0145808_12	742733.HMPREF9469_05009	228.0	0	N/A	N/A
PHROG	UHGV-0145808_13	phrog_31538	40.8	0.000000000042	N/A	unknown function
eggNOG-mapper	UHGV-0145808_13	428125.CLOLEP_01433	53.1	0.0000000731	N/A	N/A
structural_annotation	UHGV-0145808_14	PF12245	N/A	N/A	N/A	N/A
PHROG	UHGV-0145808_16	phrog_18444	82.9	2.2e-24	N/A	unknown function
UniRef90	UHGV-0145808_16	UniRef90_UPI00156E9A45	57.8	0.00000000102	peptide chain release factor 2	N/A
eggNOG-mapper	UHGV-0145808_16	1294142.CINTURNW_1707	62.0	0.00000000000362	N/A	N/A
KOfam	UHGV-0145808_20	K07741	73.7	5.9e-21	antB; anti-repressor protein	N/A
PHROG	UHGV-0145808_20	phrog_130	248.3	0	anti-repressor Ant	transcription regulation
UniRef90	UHGV-0145808_20	UniRef90_A0A7I8D1H8	363.0	0	Putative antirepressor - phage associated	N/A
eggNOG-mapper	UHGV-0145808_20	1232449.BAHV02000010_gene2739	283.0	0	BRO family, N-terminal domain	N/A
Pfam	UHGV-0145808_20	PF02498	N/A	N/A	BRO family, N-terminal domain	Bro-N
Pfam	UHGV-0145808_20	PF03374	N/A	N/A	Phage antirepressor protein KilAC domain	ANT
COG	UHGV-0145808_20	COG3617	N/A	N/A	Prophage antirepressor	N/A
structural_annotation	UHGV-0145808_20	PF03374,PF02498,TIGR02681,COG3645	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0145808_22	PF09454,MF_00644	N/A	N/A	N/A	N/A
UniRef90	UHGV-0145808_23	UniRef90_A0A7M1Q4S5	61.2	0.0000000000326	Ribbon-helix-helix protein, CopG family	N/A
eggNOG-mapper	UHGV-0145808_23	663952.SDD27957_09060	52.0	0.0000000242	N/A	N/A
structural_annotation	UHGV-0145808_23	PF12651,NF041793,COG4710	N/A	N/A	N/A	N/A
KOfam	UHGV-0145808_24	K07727	53.1	0.0000000000000092	K07727; putative transcriptional regulator	N/A
UniRef90	UHGV-0145808_24	UniRef90_A0A2V2FGW5	107.0	4.1e-29	XRE family transcriptional regulator	N/A
eggNOG-mapper	UHGV-0145808_24	1378168.N510_01451	83.6	1.66e-20	Cro/C1-type HTH DNA-binding domain	N/A
Pfam	UHGV-0145808_24	PF13443	N/A	N/A	Cro/C1-type HTH DNA-binding domain	HTH_26
structural_annotation	UHGV-0145808_24	PF13443,NF000090,COG3655	N/A	N/A	N/A	N/A
PHROG	UHGV-0145808_26	phrog_1194	54.5	0.000000000000002	N/A	unknown function
eggNOG-mapper	UHGV-0145808_26	411471.SUBVAR_06933	198.0	0	N/A	N/A
structural_annotation	UHGV-0145808_26	PF20458,TIGR02126,COG4718	N/A	N/A	N/A	N/A
PHROG	UHGV-0145808_27	phrog_1535	98.5	0	tail length tape measure protein	tail
eggNOG-mapper	UHGV-0145808_27	411471.SUBVAR_06934	193.0	0	tape measure	N/A
COG	UHGV-0145808_27	COG5412	N/A	N/A	Phage-related protein	N/A
PHROG	UHGV-0145808_28	phrog_706	96.5	3e-28	N/A	unknown function
UniRef90	UHGV-0145808_28	UniRef90_UPI0013141117	372.0	0	Gp15 family bacteriophage protein	N/A
eggNOG-mapper	UHGV-0145808_28	665956.HMPREF1032_03058	238.0	0	Bacteriophage Gp15 protein	N/A
Pfam	UHGV-0145808_28	PF06854	N/A	N/A	Bacteriophage Gp15 protein	Phage_Gp15
structural_annotation	UHGV-0145808_28	PF06854	N/A	N/A	N/A	N/A
PHROG	UHGV-0145808_29	phrog_11299	87.7	6e-26	N/A	unknown function
eggNOG-mapper	UHGV-0145808_29	665956.HMPREF1032_03059	124.0	1.25e-34	N/A	N/A
structural_annotation	UHGV-0145808_29	PF10666	N/A	N/A	N/A	N/A
PHROG	UHGV-0145808_30	phrog_3099	69.3	7.2e-20	N/A	unknown function
eggNOG-mapper	UHGV-0145808_30	665956.HMPREF1032_03060	247.0	0	N/A	N/A
structural_annotation	UHGV-0145808_30	PF10772,TIGR02126,COG3499	N/A	N/A	N/A	N/A
PHROG	UHGV-0145808_31	phrog_3266	75.6	6.4e-22	tail completion	connector
eggNOG-mapper	UHGV-0145808_31	663278.Ethha_0492	60.1	0.00000000141	N/A	N/A
structural_annotation	UHGV-0145808_31	PF12691	N/A	N/A	N/A	N/A
PHROG	UHGV-0145808_32	phrog_556	96.9	1.4e-28	minor head protein	head and packaging
UniRef90	UHGV-0145808_32	UniRef90_UPI001958E7C1	230.0	0	minor capsid protein	N/A
eggNOG-mapper	UHGV-0145808_32	665956.HMPREF1032_03062	177.0	0	Minor capsid protein	N/A
Pfam	UHGV-0145808_32	PF11114	N/A	N/A	Minor capsid protein	Minor_capsid_2
structural_annotation	UHGV-0145808_32	PF11114	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0145808_33	411471.SUBVAR_06991	57.0	0.0000000049	N/A	N/A
Pfam	UHGV-0145808_33	PF20536	N/A	N/A	N/A	DUF6751
structural_annotation	UHGV-0145808_33	PF20536	N/A	N/A	N/A	N/A
PHROG	UHGV-0145808_34	phrog_541	59.8	4.9e-17	head-tail adaptor	connector
eggNOG-mapper	UHGV-0145808_34	665956.HMPREF1032_03064	75.9	0.00000000000000109	N/A	N/A
PHROG	UHGV-0145808_35	phrog_10	180.1	0	major head protein	head and packaging
UniRef90	UHGV-0145808_35	UniRef90_A0A367GHJ2	749.0	0	Phage major capsid protein	N/A
eggNOG-mapper	UHGV-0145808_35	1120998.AUFC01000030_gene2236	521.0	0	Phage capsid family	N/A
Pfam	UHGV-0145808_35	PF05065	N/A	N/A	Phage capsid family	Phage_capsid
NCBIFam	UHGV-0145808_35	TIGR01554.2	N/A	N/A	phage major capsid protein	N/A
COG	UHGV-0145808_35	COG4653	N/A	N/A	Predicted phage phi-C31 gp36 major capsid-like protein	N/A
structural_annotation	UHGV-0145808_35	PF05065,PF13620,MF_04119,TIGR01554,COG4653	N/A	N/A	N/A	N/A
PHROG	UHGV-0145808_36	phrog_194	60.7	1.9e-17	head scaffolding protein	head and packaging
UniRef90	UHGV-0145808_36	UniRef90_UPI00195B7610	163.0	0	phage scaffolding protein	N/A
eggNOG-mapper	UHGV-0145808_36	663278.Ethha_0093	159.0	0	N/A	N/A
Pfam	UHGV-0145808_36	PF06810	N/A	N/A	Phage minor structural protein GP20	Phage_GP20
structural_annotation	UHGV-0145808_36	PF06810	N/A	N/A	N/A	N/A
PHROG	UHGV-0145808_39	phrog_581	346.3	0	minor head protein	head and packaging
UniRef90	UHGV-0145808_39	UniRef90_A0A1C5NZK4	570.0	0	Phage minor capsid protein 2	N/A
eggNOG-mapper	UHGV-0145808_39	748224.HMPREF9436_03339	456.0	0	N/A	N/A
Pfam	UHGV-0145808_39	PF06152	N/A	N/A	Phage minor capsid protein 2	Phage_min_cap2
COG	UHGV-0145808_39	COG2369	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0145808_39	PF06152	N/A	N/A	N/A	N/A
PHROG	UHGV-0145808_40	phrog_533	358.6	0	portal protein	head and packaging
UniRef90	UHGV-0145808_40	UniRef90_A0A367GFE3	919.0	0	Capsid protein	N/A
eggNOG-mapper	UHGV-0145808_40	663278.Ethha_0090	572.0	0	N/A	N/A
Pfam	UHGV-0145808_40	PF05133	N/A	N/A	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
structural_annotation	UHGV-0145808_40	PF05133,MF_04120,TIGR01542,COG5511	N/A	N/A	N/A	N/A
KOfam	UHGV-0145808_41	K06909	131.8	6.9e-39	xtmB; phage terminase large subunit	N/A
PHROG	UHGV-0145808_41	phrog_2	157.7	0	terminase large subunit	head and packaging
UniRef90	UHGV-0145808_41	UniRef90_A0A367GH60	870.0	0	PBSX family phage terminase large subunit	N/A
eggNOG-mapper	UHGV-0145808_41	1120746.CCNL01000014_gene2093	548.0	0	DNA packaging	N/A
Pfam	UHGV-0145808_41	PF03237	N/A	N/A	Terminase large subunit, T4likevirus-type, N-terminal	Terminase_6N
Pfam	UHGV-0145808_41	PF17289	N/A	N/A	Terminase RNaseH-like domain	Terminase_6C
NCBIFam	UHGV-0145808_41	TIGR01547.1	N/A	N/A	PBSX family phage terminase large subunit	N/A
COG	UHGV-0145808_41	COG1783	N/A	N/A	Phage terminase large subunit	N/A
structural_annotation	UHGV-0145808_41	PF04466,PF20454,MF_04148,TIGR01547,COG1783	N/A	N/A	N/A	N/A
PHROG	UHGV-0145808_42	phrog_606	91.3	1e-26	terminase small subunit	head and packaging
UniRef90	UHGV-0145808_42	UniRef90_UPI00195648BB	182.0	0	DNA-packaging protein	N/A
eggNOG-mapper	UHGV-0145808_42	397290.C810_05185	160.0	0	DNA-packaging protein gp3	N/A
Pfam	UHGV-0145808_42	PF16677	N/A	N/A	DNA-packaging protein gp3	GP3_package
structural_annotation	UHGV-0145808_42	PF16677	N/A	N/A	N/A	N/A
KOfam	UHGV-0145808_43	K03071	61.5	1.7e-17	secB; preprotein translocase subunit SecB	N/A
PHROG	UHGV-0145808_43	phrog_21664	45.9	0.0000000000011	N/A	unknown function
UniRef90	UHGV-0145808_43	UniRef90_A0A3E2TBE1	119.0	8.91e-32	Preprotein translocase subunit SecB	N/A
eggNOG-mapper	UHGV-0145808_43	478749.BRYFOR_09873	78.6	9.92e-17	Preprotein translocase subunit SecB	N/A
Pfam	UHGV-0145808_43	PF02556	N/A	N/A	Preprotein translocase subunit SecB	SecB
COG	UHGV-0145808_43	COG1952	N/A	N/A	Preprotein translocase subunit SecB	N/A
structural_annotation	UHGV-0145808_43	PF02556,MF_00821,NF004391,COG1952	N/A	N/A	N/A	N/A
PHROG	UHGV-0145808_46	phrog_36	80.3	2.9e-23	transcriptional regulator	transcription regulation
UniRef90	UHGV-0145808_46	UniRef90_A0A353BRJ1	100.0	1.59e-24	Sigma70_r4 domain-containing protein	N/A
eggNOG-mapper	UHGV-0145808_46	411471.SUBVAR_05843	140.0	6.84002e-41	N/A	N/A
structural_annotation	UHGV-0145808_46	PF04545,MF_00674,NF005248,COG1595	N/A	N/A	N/A	N/A
KOfam	UHGV-0145808_51	K01160	41.9	0.000000000026	rusA; crossover junction endodeoxyribonuclease RusA [EC:3.1.21.10]	N/A
PHROG	UHGV-0145808_51	phrog_140	90.9	1.6e-26	RusA-like Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0145808_51	UniRef90_A0A367GHC7	286.0	0	RusA family crossover junction endodeoxyribonuclease	N/A
eggNOG-mapper	UHGV-0145808_51	394503.Ccel_3302	157.0	0	endodeoxyribonuclease RusA	N/A
Pfam	UHGV-0145808_51	PF05866	N/A	N/A	Endodeoxyribonuclease RusA	RusA
COG	UHGV-0145808_51	COG4570	N/A	N/A	Holliday junction resolvase RusA (prophage-encoded endonuclease)	N/A
structural_annotation	UHGV-0145808_51	PF05866,NF007305,COG4570	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0145808_52	394503.Ccel_3304	67.0	0.00000000000672	Primase C terminal 2 (PriCT-2)	N/A
COG	UHGV-0145808_52	COG3598	N/A	N/A	RecA-family ATPase	N/A

All viral genomes

ID	Representative?	Length (bps)	% GC Content	CheckV Completeness	geNomad Score
UHGV-0145808	Yes	29,241	57	76	1