vOTU vOTU-100560

vOTU: vOTU-100560

Overview

Genome (FASTA) Annotation Track (GFF) Proteins (FASTA) Protein Annotation (TSV)

Cluster properties
vOTU ID	vOTU-100560
Number of genomes	2
Taxonomy (ICTV)	Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes
Taxonomy (UHGV)	vFAM-00007 → vSUBFAM-00040 → vGENUS-00013 → vOTU-100560
Host lineage	Bacteria → Firmicutes_A → Clostridia → Lachnospirales → Lachnospiraceae → Agathobacter → Agathobacter faecis
Host range breadth	Species
Lifestyle	lytic (evidence: BACPHLIP)

Representative genome
Genome ID	UHGV-1488767
Biosample ID	SAMEA4378261
Genome length (bp)	38,115 bps
CheckV completeness	66.14% (Medium-quality)
CDS count	58
CDS density	93.93%
tRNA count	0
Integrase	No
Viral confidence	Confident

Host assignment details
Assignment method	CRISPR
CRISPR-predicted host lineage	Bacteria → Firmicutes_A → Clostridia → Lachnospirales → Lachnospiraceae → Agathobacter → Agathobacter faecis	Total connections	1735	Host agreement	73.03
PHIST-predicted host lineage	Bacteria → Firmicutes_A → Clostridia → Lachnospirales → Lachnospiraceae → Agathobacter → Agathobacter faecis	Total connections	10	Host agreement	80

Representative genome content

Select to view: Genome Viewer Functional Annotation

Genome view (completeness: 66.14)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
PHROG	UHGV-1488767_3	phrog_21026	55.5	9.2e-16	N/A	unknown function
KOfam	UHGV-1488767_7	K02314	303.9	0	dnaB; replicative DNA helicase [EC:5.6.2.3]	N/A
PHROG	UHGV-1488767_7	phrog_19	286.8	0	DnaB-like replicative helicase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1488767_7	UniRef90_A0A173RD23	834.0	0	DNA helicase	N/A
eggNOG-mapper	UHGV-1488767_7	1298920.KI911353_gene2061	362.0	0	Participates in initiation and elongation during chromosome replication	N/A
Pfam	UHGV-1488767_7	PF00772	N/A	N/A	DnaB-like helicase N terminal domain	DnaB
Pfam	UHGV-1488767_7	PF03796	N/A	N/A	DnaB-like helicase C terminal domain	DnaB_C
COG	UHGV-1488767_7	COG0305	N/A	N/A	Replicative DNA helicase	N/A
structural_annotation	UHGV-1488767_7	PF03796,PF00772,MF_04155,TIGR00665,COG0305	N/A	N/A	N/A	N/A
PHROG	UHGV-1488767_8	phrog_11769	196.0	0	N/A	unknown function
UniRef90	UHGV-1488767_8	UniRef90_A0A173RDT0	483.0	0	Phage replisome organizer, putative, N-terminal region	N/A
eggNOG-mapper	UHGV-1488767_8	1567013.A0A0A7RTL4_9CAUD	187.0	0	calcium ion binding	N/A
Pfam	UHGV-1488767_8	PF09681	N/A	N/A	N-terminal phage replisome organiser (Phage_rep_org_N)	Phage_rep_org_N
NCBIFam	UHGV-1488767_8	TIGR01714.1	N/A	N/A	phage replisome organizer, putative, N-terminal region	N/A
structural_annotation	UHGV-1488767_8	PF09681,TIGR01714,COG3388	N/A	N/A	N/A	N/A
PHROG	UHGV-1488767_9	phrog_19106	307.9	0	N/A	unknown function
UniRef90	UHGV-1488767_9	UniRef90_A0A412EKN4	275.0	0	GIY-YIG nuclease family protein	N/A
eggNOG-mapper	UHGV-1488767_9	658655.HMPREF0988_00875	227.0	0	N/A	N/A
structural_annotation	UHGV-1488767_9	TIGR01453	N/A	N/A	N/A	N/A
structural_annotation	UHGV-1488767_11	PF17457	N/A	N/A	N/A	N/A
KOfam	UHGV-1488767_12	K06167	73.0	4.1e-21	phnP; phosphoribosyl 1,2-cyclic phosphate phosphodiesterase [EC:3.1.4.55]	N/A
PHROG	UHGV-1488767_12	phrog_392	194.0	0	metal-dependent hydrolase	other
UniRef90	UHGV-1488767_12	UniRef90_A0A173REW9	455.0	0	Beta-lactamase superfamily domain	N/A
eggNOG-mapper	UHGV-1488767_12	1144313.PMI10_00501	178.0	0	Metallo-beta-lactamase superfamily	N/A
Pfam	UHGV-1488767_12	PF12706	N/A	N/A	Beta-lactamase superfamily domain	Lactamase_B_2
COG	UHGV-1488767_12	COG1235	N/A	N/A	Phosphoribosyl 1,2-cyclic phosphate phosphodiesterase	N/A
structural_annotation	UHGV-1488767_12	PF02112,MF_01818,NF041851,COG1234	N/A	N/A	N/A	N/A
PHROG	UHGV-1488767_14	phrog_25456	80.5	1.7e-23	N/A	unknown function
PHROG	UHGV-1488767_16	phrog_2185	334.5	0	RecT-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1488767_16	UniRef90_UPI00157154DF	509.0	0	recombinase RecT	N/A
eggNOG-mapper	UHGV-1488767_16	1232453.BAIF02000057_gene1136	469.0	0	N/A	N/A
structural_annotation	UHGV-1488767_16	NF007351,COG3723	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-1488767_17	1232453.BAIF02000057_gene1135	73.2	0.0000000000000188	N/A	N/A
eggNOG-mapper	UHGV-1488767_18	1449126.JQKL01000024_gene2354	151.0	5.60519e-45	N/A	N/A
KOfam	UHGV-1488767_19	K19171	97.2	1.5e-28	dndD; DNA sulfur modification protein DndD	N/A
PHROG	UHGV-1488767_19	phrog_77	225.2	0	SbcC-like subunit of palindrome specific endonuclease	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1488767_19	UniRef90_UPI001D02FD96	864.0	0	AAA family ATPase	N/A
eggNOG-mapper	UHGV-1488767_19	1294142.CINTURNW_1008	305.0	0	nuclear chromosome segregation	N/A
COG	UHGV-1488767_19	COG1196	N/A	N/A	Chromosome segregation ATPase Smc	N/A
structural_annotation	UHGV-1488767_19	PF02463,MF_00449,NF041034,COG0419	N/A	N/A	N/A	N/A
PHROG	UHGV-1488767_20	phrog_26861	88.6	1.5e-26	N/A	unknown function
UniRef90	UHGV-1488767_20	UniRef90_A0A173RCS5	349.0	0	Single-stranded DNA-binding protein	N/A
eggNOG-mapper	UHGV-1488767_20	1120998.AUFC01000016_gene32	113.0	1.05e-28	PFAM single-strand binding protein Primosomal replication protein n	N/A
Pfam	UHGV-1488767_20	PF00436	N/A	N/A	Single-strand binding protein family	SSB
COG	UHGV-1488767_20	COG0629	N/A	N/A	Single-stranded DNA-binding protein	N/A
structural_annotation	UHGV-1488767_20	PF00436,PF13567,MF_00984,NF004476,COG0629	N/A	N/A	N/A	N/A
KOfam	UHGV-1488767_23	K07741	117.3	2.7e-34	antB; anti-repressor protein	N/A
PHROG	UHGV-1488767_23	phrog_130	236.7	0	anti-repressor Ant	transcription regulation
UniRef90	UHGV-1488767_23	UniRef90_A0A1T5K3B0	307.0	0	Phage antirepressor protein YoqD, KilAC domain	N/A
eggNOG-mapper	UHGV-1488767_23	1123263.AUKY01000072_gene2107	245.0	0	BRO family, N-terminal domain	N/A
Pfam	UHGV-1488767_23	PF02498	N/A	N/A	BRO family, N-terminal domain	Bro-N
Pfam	UHGV-1488767_23	PF03374	N/A	N/A	Phage antirepressor protein KilAC domain	ANT
COG	UHGV-1488767_23	COG3617	N/A	N/A	Prophage antirepressor	N/A
structural_annotation	UHGV-1488767_23	PF03374,PF02498,TIGR02681,COG3645	N/A	N/A	N/A	N/A
UniRef90	UHGV-1488767_26	UniRef90_A0A3R6TRW8	65.1	0.00000000000118	XRE family transcriptional regulator	N/A
COG	UHGV-1488767_26	COG1476	N/A	N/A	DNA-binding transcriptional regulator, XRE-family HTH domain	N/A
structural_annotation	UHGV-1488767_26	PF01381,NF041951,COG1396	N/A	N/A	N/A	N/A
PHROG	UHGV-1488767_27	phrog_8	55.2	0.0000000000000016	transcriptional regulator	transcription regulation
UniRef90	UHGV-1488767_27	UniRef90_A0A1C5WLU7	117.0	5.86e-32	Helix-turn-helix domain	N/A
eggNOG-mapper	UHGV-1488767_27	411462.DORLON_00819	72.8	0.00000000000000518	Cro/C1-type HTH DNA-binding domain	N/A
COG	UHGV-1488767_27	COG1476	N/A	N/A	DNA-binding transcriptional regulator, XRE-family HTH domain	N/A
structural_annotation	UHGV-1488767_27	PF12844,NF041951,COG3655	N/A	N/A	N/A	N/A
NCBIFam	UHGV-1488767_31	NF040910.1	N/A	N/A	CD1375 family protein	N/A
structural_annotation	UHGV-1488767_31	NF040910	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-1488767_32	1232452.BAIB02000007_gene1607	77.0	2.88e-16	N/A	N/A
eggNOG-mapper	UHGV-1488767_33	665956.HMPREF1032_02937	59.7	0.000000446	cellulose 1,4-beta-cellobiosidase activity	N/A
COG	UHGV-1488767_33	COG5301	N/A	N/A	Phage-related tail fiber protein	N/A
PHROG	UHGV-1488767_34	phrog_17196	154.2	0	kinase	other
eggNOG-mapper	UHGV-1488767_34	483218.BACPEC_01141	191.0	0	N/A	N/A
structural_annotation	UHGV-1488767_34	PF19537,PF13619,COG3536	N/A	N/A	N/A	N/A
PHROG	UHGV-1488767_35	phrog_18190	485.0	0	N/A	unknown function
UniRef90	UHGV-1488767_35	UniRef90_A0A173UFM3	1257.0	0	Peptidase S74 domain-containing protein	N/A
eggNOG-mapper	UHGV-1488767_35	397290.C810_05239	296.0	0	N/A	N/A
Pfam	UHGV-1488767_35	PF13884	N/A	N/A	Chaperone of endosialidase	Peptidase_S74
structural_annotation	UHGV-1488767_35	PF05113,NF033848,COG3500	N/A	N/A	N/A	N/A
PHROG	UHGV-1488767_36	phrog_1194	46.6	0.00000000000049	N/A	unknown function
Pfam	UHGV-1488767_36	PF20458	N/A	N/A	N/A	DUF6711
structural_annotation	UHGV-1488767_36	PF20458,TIGR01633,COG3499	N/A	N/A	N/A	N/A
PHROG	UHGV-1488767_37	phrog_130	146.4	1.90577e-43	anti-repressor Ant	transcription regulation
UniRef90	UHGV-1488767_37	UniRef90_UPI0009D7969F	232.0	0	transporter	N/A
eggNOG-mapper	UHGV-1488767_37	1443125.Z962_p0009	204.0	0	BRO family, N-terminal domain	N/A
Pfam	UHGV-1488767_37	PF02498	N/A	N/A	BRO family, N-terminal domain	Bro-N
COG	UHGV-1488767_37	COG3617	N/A	N/A	Prophage antirepressor	N/A
structural_annotation	UHGV-1488767_37	PF02498,COG3617	N/A	N/A	N/A	N/A
PHROG	UHGV-1488767_38	phrog_806	67.9	1.2e-19	N/A	unknown function
UniRef90	UHGV-1488767_38	UniRef90_UPI001D08E833	117.0	3.17e-28	N/A	N/A
eggNOG-mapper	UHGV-1488767_38	1235802.C823_04880	106.0	1.66e-25	N/A	N/A
Pfam	UHGV-1488767_38	PF11611	N/A	N/A	N/A	DUF4352
structural_annotation	UHGV-1488767_38	PF11611,PF13828,MF_00791,NF003967,COG2967	N/A	N/A	N/A	N/A
PHROG	UHGV-1488767_39	phrog_215	44.9	0.000000000002	structural protein with Ig domain	head and packaging
UniRef90	UHGV-1488767_39	UniRef90_A0A1G5JI33	81.6	2.47e-16	Ig-like domain (Group 2) (Fragment)	N/A
eggNOG-mapper	UHGV-1488767_39	1280681.AUJZ01000002_gene1435	75.5	0.0000000000003	Bacterial Ig-like domain 2	N/A
Pfam	UHGV-1488767_39	PF02368	N/A	N/A	Bacterial Ig-like domain (group 2)	Big_2
structural_annotation	UHGV-1488767_39	PF02368,NF041740	N/A	N/A	N/A	N/A
PHROG	UHGV-1488767_40	phrog_1535	155.0	0	tail length tape measure protein	tail
eggNOG-mapper	UHGV-1488767_40	397288.C806_03052	199.0	0	domain protein	N/A
COG	UHGV-1488767_40	COG3941	N/A	N/A	Phage tail tape-measure protein, controls tail length	N/A
structural_annotation	UHGV-1488767_40	PF20155,MF_04138	N/A	N/A	N/A	N/A
PHROG	UHGV-1488767_41	phrog_14030	129.5	2.3e-38	N/A	unknown function
UniRef90	UHGV-1488767_41	UniRef90_A0A3R6ARM6	205.0	0	Peptidoglycan-binding protein	N/A
eggNOG-mapper	UHGV-1488767_41	1235793.C809_02691	171.0	0	N-Acetylmuramoyl-L-alanine amidase	N/A
COG	UHGV-1488767_41	COG3023	N/A	N/A	N-acetyl-anhydromuramyl-L-alanine amidase AmpD	N/A
UniRef90	UHGV-1488767_44	UniRef90_A0A8D9PGN2	184.0	0	Major tail protein	N/A
structural_annotation	UHGV-1488767_44	PF16463,TIGR02126,COG5437	N/A	N/A	N/A	N/A
structural_annotation	UHGV-1488767_45	PF05657	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-1488767_46	1298920.KI911353_gene2654	178.0	0	N/A	N/A
AcrCatalog	UHGV-1488767_46	cluster_24841	90.9	5.43e-25	NA	N/A
structural_annotation	UHGV-1488767_47	PF07405,TIGR01563,COG5614	N/A	N/A	N/A	N/A
PHROG	UHGV-1488767_48	phrog_18218	133.5	6.4e-40	N/A	unknown function
UniRef90	UHGV-1488767_48	UniRef90_A0A8D9PGR5	177.0	0	Holin	N/A
eggNOG-mapper	UHGV-1488767_48	411902.CLOBOL_03424	81.6	1.22e-18	N/A	N/A
PHROG	UHGV-1488767_49	phrog_1863	56.6	2.3e-16	N/A	unknown function
eggNOG-mapper	UHGV-1488767_49	742741.HMPREF9475_00442	63.2	0.0000000000163	N/A	N/A
eggNOG-mapper	UHGV-1488767_50	397290.C810_01402	61.6	0.000000000143	N/A	N/A
UniRef90	UHGV-1488767_51	UniRef90_A0A416G2T8	64.3	0.00000000000759	Rho_N domain-containing protein	N/A
structural_annotation	UHGV-1488767_51	PF21169	N/A	N/A	N/A	N/A
PHROG	UHGV-1488767_52	phrog_29	162.3	0	major head protein	head and packaging
UniRef90	UHGV-1488767_52	UniRef90_UPI001D02C54B	692.0	0	major capsid protein	N/A
eggNOG-mapper	UHGV-1488767_52	1298920.KI911353_gene2660	343.0	0	Phage major capsid protein E	N/A
Pfam	UHGV-1488767_52	PF03864	N/A	N/A	Phage major capsid protein E	Phage_cap_E
structural_annotation	UHGV-1488767_52	PF03864,MF_04133,NF041162,COG4653	N/A	N/A	N/A	N/A
PHROG	UHGV-1488767_53	phrog_909	46.7	0.0000000000005	major head protein	head and packaging
eggNOG-mapper	UHGV-1488767_53	1298920.KI911353_gene2661	120.0	1.09e-33	N/A	N/A
UniRef90	UHGV-1488767_54	UniRef90_R6C0B6	124.0	1.93e-32	Phage capsid scaffolding protein	N/A
PHROG	UHGV-1488767_55	phrog_64	170.3	0	portal protein	head and packaging
UniRef90	UHGV-1488767_55	UniRef90_R7BGE4	769.0	0	SPP1 family phage portal protein	N/A
eggNOG-mapper	UHGV-1488767_55	1298920.KI911353_gene2663	485.0	0	Phage portal protein, SPP1 Gp6-like	N/A
Pfam	UHGV-1488767_55	PF05133	N/A	N/A	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
structural_annotation	UHGV-1488767_55	PF05133,MF_04120,TIGR01538,COG5511	N/A	N/A	N/A	N/A
PHROG	UHGV-1488767_56	phrog_36	66.7	4.2e-19	transcriptional regulator	transcription regulation
UniRef90	UHGV-1488767_56	UniRef90_A0A410QFZ6	85.9	1.07e-18	N/A	N/A
eggNOG-mapper	UHGV-1488767_56	994573.T472_0211085	77.4	3.89e-16	sigma factor activity	N/A
COG	UHGV-1488767_56	COG1191	N/A	N/A	DNA-directed RNA polymerase specialized sigma subunit	N/A
structural_annotation	UHGV-1488767_56	PF07374,MF_00674,NF008895,COG1191	N/A	N/A	N/A	N/A
PHROG	UHGV-1488767_57	phrog_38	145.0	4.80645e-43	terminase large subunit	head and packaging
UniRef90	UHGV-1488767_57	UniRef90_A0A8D9PG33	744.0	0	Terminase	N/A
eggNOG-mapper	UHGV-1488767_57	1232453.BAIF02000058_gene1623	422.0	0	TIGRFAM Phage	N/A
COG	UHGV-1488767_57	COG5410	N/A	N/A	N/A	N/A
structural_annotation	UHGV-1488767_57	PF17289,PF02562,MF_04147,NF033889,COG5362,COG5410	N/A	N/A	N/A	N/A

All viral genomes

ID	Representative?	Length (bps)	% GC Content	CheckV Completeness	geNomad Score
UHGV-1488767	Yes	38,115	40	66	1
UHGV-0116299	No	38,115	40	66	1