vOTU vOTU-100647

vOTU: vOTU-100647

Overview

Genome (FASTA) Annotation Track (GFF) Proteins (FASTA) Protein Annotation (TSV)

Cluster properties
vOTU ID	vOTU-100647
Number of genomes	1
Taxonomy (ICTV)	Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes
Taxonomy (UHGV)	vFAM-00040 → vSUBFAM-00184 → vOTU-100647
Host lineage	Bacteria → Firmicutes_A → Clostridia → Oscillospirales → Oscillospiraceae → CAG-170 → CAG-170 sp000432135
Host range breadth	Species
Lifestyle	temperate (evidence: BACPHLIP)

Representative genome
Genome ID	UHGV-1420664
Biosample ID	SAMEA2581901
Genome length (bp)	21,839 bps
CheckV completeness	54.10% (Medium-quality)
CDS count	37
CDS density	88.18%
tRNA count	0
Integrase	No
Viral confidence	Confident

Host assignment details
Assignment method	CRISPR
CRISPR-predicted host lineage	Bacteria → Firmicutes_A → Clostridia → Oscillospirales → Oscillospiraceae → CAG-170 → CAG-170 sp000432135	Total connections	134	Host agreement	84.33
PHIST-predicted host lineage		Total connections		Host agreement

Representative genome content

Select to view: Genome Viewer Functional Annotation

Genome view (completeness: 54.1)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
KOfam	UHGV-1420664_1	K14059	157.6	0	int; integrase	N/A
PHROG	UHGV-1420664_1	phrog_1	164.3	0	integrase	integration and excision
UniRef90	UHGV-1420664_1	UniRef90_A0A2Z4QB94	241.0	0	Tyr recombinase domain-containing protein	N/A
eggNOG-mapper	UHGV-1420664_1	1514668.JOOA01000001_gene242	144.0	1.22e-37	Phage integrase family	N/A
Pfam	UHGV-1420664_1	PF00589	N/A	N/A	Phage integrase family	Phage_integrase
COG	UHGV-1420664_1	COG0582	N/A	N/A	Integrase/recombinase, includes phage integrase	N/A
structural_annotation	UHGV-1420664_1	PF00589,PF12167,MF_02055,NF040815,COG4974	N/A	N/A	N/A	N/A
Pfam	UHGV-1420664_2	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
COG	UHGV-1420664_2	COG1396	N/A	N/A	Transcriptional regulator, contains XRE-family HTH domain	N/A
structural_annotation	UHGV-1420664_2	PF01381,MF_00535,NF041951,COG1396	N/A	N/A	N/A	N/A
UniRef90	UHGV-1420664_3	UniRef90_UPI0013EF4989	117.0	3.78e-26	S-layer homology domain-containing protein	N/A
eggNOG-mapper	UHGV-1420664_3	411467.BACCAP_01077	114.0	2.47e-25	Pfam PF00395	N/A
Pfam	UHGV-1420664_3	PF00395	N/A	N/A	S-layer homology domain	SLH
COG	UHGV-1420664_3	COG5279	N/A	N/A	Cytokinesis protein 3, contains TGc (transglutaminase/protease-like) domain	N/A
structural_annotation	UHGV-1420664_3	PF02805	N/A	N/A	N/A	N/A
UniRef90	UHGV-1420664_4	UniRef90_A0A4R5Y4P6	57.0	0.0000000201	XRE family transcriptional regulator	N/A
eggNOG-mapper	UHGV-1420664_4	1121344.JHZO01000003_gene989	52.8	0.000000222	PFAM helix-turn-helix domain protein	N/A
Pfam	UHGV-1420664_4	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
COG	UHGV-1420664_4	COG1974	N/A	N/A	SOS-response transcriptional repressor LexA (RecA-mediated autopeptidase)	N/A
structural_annotation	UHGV-1420664_4	PF12844,MF_00535,NF007257,COG1396	N/A	N/A	N/A	N/A
KOfam	UHGV-1420664_5	K22299	46.5	0.00000000000073	rghR; HTH-type transcriptional regulator, competence development regulator	N/A
PHROG	UHGV-1420664_5	phrog_4	41.0	0.000000000037	transcriptional repressor	transcription regulation
UniRef90	UHGV-1420664_5	UniRef90_A0A096BAN9	60.8	0.000000000116	HTH cro/C1-type domain-containing protein	N/A
eggNOG-mapper	UHGV-1420664_5	910313.HMPREF9320_0986	48.9	0.00000673	Transcriptional	N/A
Pfam	UHGV-1420664_5	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
COG	UHGV-1420664_5	COG1476	N/A	N/A	DNA-binding transcriptional regulator, XRE-family HTH domain	N/A
structural_annotation	UHGV-1420664_5	PF01381,NF041951,COG1476	N/A	N/A	N/A	N/A
structural_annotation	UHGV-1420664_6	PF21291,TIGR03070,COG3655	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-1420664_7	760568.Desku_0919	112.0	3.99e-28	N/A	N/A
structural_annotation	UHGV-1420664_7	PF03787,TIGR02581,COG1604	N/A	N/A	N/A	N/A
PHROG	UHGV-1420664_11	phrog_434	327.1	0	RecE-like recombination exonuclease	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1420664_11	UniRef90_A0A1Y4W4B5	421.0	0	YqaJ domain-containing protein	N/A
eggNOG-mapper	UHGV-1420664_11	428125.CLOLEP_01823	340.0	0	YqaJ viral recombinase family	N/A
Pfam	UHGV-1420664_11	PF09588	N/A	N/A	YqaJ-like viral recombinase domain	YqaJ
NCBIFam	UHGV-1420664_11	TIGR03033.1	N/A	N/A	putative phage-type endonuclease	N/A
COG	UHGV-1420664_11	COG5377	N/A	N/A	Phage-related protein, predicted endonuclease	N/A
structural_annotation	UHGV-1420664_11	PF09588,MF_03030,TIGR03033,COG5377	N/A	N/A	N/A	N/A
KOfam	UHGV-1420664_12	K07455	280.4	0	recT; recombination protein RecT	N/A
PHROG	UHGV-1420664_12	phrog_148	272.3	0	RecT-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1420664_12	UniRef90_A0A1Y4W4R3	386.0	0	Recombinase RecT	N/A
eggNOG-mapper	UHGV-1420664_12	1226322.HMPREF1545_00015	343.0	0	RecT family	N/A
Pfam	UHGV-1420664_12	PF03837	N/A	N/A	RecT family	RecT
NCBIFam	UHGV-1420664_12	TIGR00616.1	N/A	N/A	recombinase, phage RecT family	N/A
COG	UHGV-1420664_12	COG3723	N/A	N/A	Recombinational DNA repair protein RecT	N/A
structural_annotation	UHGV-1420664_12	PF03837,NF007351,COG3723	N/A	N/A	N/A	N/A
KOfam	UHGV-1420664_13	K03111	147.1	1.59748e-43	ssb; single-strand DNA-binding protein	N/A
PHROG	UHGV-1420664_13	phrog_44	145.9	2.00386e-43	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1420664_13	UniRef90_R6LLA3	194.0	0	Single-stranded DNA-binding protein	N/A
eggNOG-mapper	UHGV-1420664_13	693746.OBV_12860	182.0	0	Single-strand binding protein family	N/A
Pfam	UHGV-1420664_13	PF00436	N/A	N/A	Single-strand binding protein family	SSB
NCBIFam	UHGV-1420664_13	TIGR00621.2	N/A	N/A	single-stranded DNA-binding protein	N/A
COG	UHGV-1420664_13	COG0629	N/A	N/A	Single-stranded DNA-binding protein	N/A
HAMAP	UHGV-1420664_13	MF_00984	N/A	N/A	Single-stranded DNA-binding protein	N/A
structural_annotation	UHGV-1420664_13	PF00436,MF_00984,NF005241,COG0629	N/A	N/A	N/A	N/A
PHROG	UHGV-1420664_14	phrog_5810	73.4	2.9e-21	replication initiation protein	DNA, RNA and nucleotide metabolism
eggNOG-mapper	UHGV-1420664_14	742740.HMPREF9474_03117	193.0	0	N/A	N/A
structural_annotation	UHGV-1420664_14	PF01475,NF006999,COG0735	N/A	N/A	N/A	N/A
PHROG	UHGV-1420664_15	phrog_757	203.9	0	DNA methyltransferase	other
UniRef90	UHGV-1420664_15	UniRef90_A0A355KVL2	358.0	0	DNA cytosine methyltransferase	N/A
eggNOG-mapper	UHGV-1420664_15	748224.HMPREF9436_03069	370.0	0	DNA (cytosine-5-)-methyltransferase activity	N/A
COG	UHGV-1420664_15	COG0270	N/A	N/A	DNA-cytosine methylase	N/A
structural_annotation	UHGV-1420664_15	PF00145,MF_01872,TIGR00675,COG0270	N/A	N/A	N/A	N/A
Pfam	UHGV-1420664_16	PF04448	N/A	N/A	N/A	DUF551
PHROG	UHGV-1420664_17	phrog_3136	135.8	1.4e-40	N/A	unknown function
UniRef90	UHGV-1420664_17	UniRef90_A0A3D0HBD2	117.0	2.22e-30	ASCH domain-containing protein	N/A
eggNOG-mapper	UHGV-1420664_17	1235793.C809_02645	71.2	0.000000000000953	The globular domain of the protein is located near the polypeptide exit tunnel on the outside of the subunit, while an extended beta-hairpin is found that lines the wall of the exit tunnel in the center of the 70S ribosome	N/A
Pfam	UHGV-1420664_17	PF04266	N/A	N/A	ASCH domain	ASCH
COG	UHGV-1420664_17	COG4933	N/A	N/A	Predicted transcriptional regulator, contains an HTH and PUA-like domains	N/A
structural_annotation	UHGV-1420664_17	PF04266,MF_00684,NF008917,COG4933	N/A	N/A	N/A	N/A
PHROG	UHGV-1420664_18	phrog_38832	50.9	5.5e-16	N/A	unknown function
UniRef90	UHGV-1420664_18	UniRef90_A0A415TX35	54.3	0.000003	BAH domain-containing protein	N/A
eggNOG-mapper	UHGV-1420664_18	445972.ANACOL_00165	66.2	0.0000000000385	N/A	N/A
PHROG	UHGV-1420664_21	phrog_1770	57.1	3.4e-16	Holliday junction resolvase	DNA, RNA and nucleotide metabolism
eggNOG-mapper	UHGV-1420664_21	536233.CLO_1822	154.0	2.8026e-45	N/A	N/A
structural_annotation	UHGV-1420664_21	PF02075,MF_00034,NF000711,COG0817	N/A	N/A	N/A	N/A
PHROG	UHGV-1420664_22	phrog_9300	72.0	8.5e-22	N/A	unknown function
UniRef90	UHGV-1420664_22	UniRef90_UPI001E4B013D	94.4	5.93e-20	N/A	N/A
PHROG	UHGV-1420664_26	phrog_801	73.4	3.9e-21	endolysin; inhibits RNA polymerase	lysis
UniRef90	UHGV-1420664_26	UniRef90_A0A1C6J908	86.3	2.27e-18	N/A	N/A
eggNOG-mapper	UHGV-1420664_26	1366055.S5MLS6_9CAUD	62.4	0.00000000292	Cytidine and deoxycytidylate deaminase zinc-binding region	N/A
Pfam	UHGV-1420664_26	PF18909	N/A	N/A	dATP/dGTP diphosphohydrolase, N-terminal	dGTP_diPhyd_N
structural_annotation	UHGV-1420664_29	PF17917	N/A	N/A	N/A	N/A
PHROG	UHGV-1420664_31	phrog_15863	159.6	0	N/A	unknown function
UniRef90	UHGV-1420664_31	UniRef90_A0A1Y3R3M0	213.0	0	J domain-containing protein	N/A
eggNOG-mapper	UHGV-1420664_31	693746.OBV_01780	185.0	0	DnaJ molecular chaperone homology domain	N/A
COG	UHGV-1420664_31	COG2214	N/A	N/A	Curved DNA-binding protein CbpA, contains a DnaJ-like domain	N/A
eggNOG-mapper	UHGV-1420664_32	1232443.BAIA02000078_gene38	56.2	0.0000000416	N/A	N/A
KOfam	UHGV-1420664_33	K06909	140.1	1.70006e-41	xtmB; phage terminase large subunit	N/A
PHROG	UHGV-1420664_33	phrog_979	121.0	1.7e-37	terminase large subunit	head and packaging
UniRef90	UHGV-1420664_33	UniRef90_A0A810QAS9	540.0	0	Phage terminase large subunit	N/A
eggNOG-mapper	UHGV-1420664_33	693746.OBV_01690	537.0	0	phage Terminase large subunit	N/A
Pfam	UHGV-1420664_33	PF04466	N/A	N/A	Phage terminase large subunit	Terminase_3
COG	UHGV-1420664_33	COG1783	N/A	N/A	Phage terminase large subunit	N/A
structural_annotation	UHGV-1420664_33	PF04466,PF20454,MF_04148,TIGR01547,COG1783	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-1420664_34	1519439.JPJG01000011_gene57	101.0	2.07e-25	N/A	N/A
structural_annotation	UHGV-1420664_34	PF11650	N/A	N/A	N/A	N/A
PHROG	UHGV-1420664_35	phrog_14606	57.5	1.8e-16	N/A	unknown function
PHROG	UHGV-1420664_36	phrog_422	141.2	3.39955e-42	major head protein	head and packaging
UniRef90	UHGV-1420664_36	UniRef90_A0A6A8VJ17	284.0	0	N4-gp56 family major capsid protein	N/A
eggNOG-mapper	UHGV-1420664_36	1408437.JNJN01000001_gene1710	216.0	0	N/A	N/A
Pfam	UHGV-1420664_36	PF13290	N/A	N/A	Chitobiase/beta-hexosaminidase C-terminal domain	CHB_HEX_C_1
structural_annotation	UHGV-1420664_36	PF19821,PF13287,MF_04119,TIGR04387,COG4653	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-1420664_37	693746.OBV_01680	98.6	3.5e-22	N/A	N/A

All viral genomes

ID	Representative?	Length (bps)	% GC Content	CheckV Completeness	geNomad Score
UHGV-1420664	Yes	21,839	53	54	1