vOTU vOTU-100728

vOTU: vOTU-100728

Overview

Genome (FASTA) Annotation Track (GFF) Proteins (FASTA) Protein Annotation (TSV)

Cluster properties
vOTU ID	vOTU-100728
Number of genomes	1
Taxonomy (ICTV)	Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes
Taxonomy (UHGV)	vFAM-00041 → vOTU-100728
Host lineage
Host range breadth
Lifestyle	lytic (evidence: BACPHLIP)

Representative genome
Genome ID	UHGV-0059213
Biosample ID	SAMEA2338719
Genome length (bp)	45,924 bps
CheckV completeness	58.90% (Medium-quality)
CDS count	68
CDS density	96.02%
tRNA count	1
Integrase	No
Viral confidence	Confident

Host assignment details
Assignment method
CRISPR-predicted host lineage	Total connections	Host agreement
PHIST-predicted host lineage	Total connections	Host agreement

Representative genome content

Select to view: Genome Viewer Functional Annotation

Genome view (completeness: 58.9)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
KOfam	UHGV-0059213_2	K00059	115.4	5.9e-34	fabG, OAR1; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100]	N/A
PHROG	UHGV-0059213_2	phrog_3142	75.8	3.1e-22	FabG-like 3-oxoacyl-(acyl-carrier-protein) reductase	moron, auxiliary metabolic gene and host takeover
UniRef90	UHGV-0059213_2	UniRef90_A0A1M6Z3X2	196.0	0	3-oxoacyl-[acyl-carrier protein] reductase	N/A
eggNOG-mapper	UHGV-0059213_2	1121296.JONJ01000016_gene2310	162.0	0	Enoyl-(Acyl carrier protein) reductase	N/A
Pfam	UHGV-0059213_2	PF13561	N/A	N/A	Enoyl-(Acyl carrier protein) reductase	adh_short_C2
COG	UHGV-0059213_2	COG1028	N/A	N/A	NAD(P)-dependent dehydrogenase, short-chain alcohol dehydrogenase family	N/A
structural_annotation	UHGV-0059213_2	PF13561,MF_01647,NF005474,COG1028	N/A	N/A	N/A	N/A
PHROG	UHGV-0059213_3	phrog_887	75.2	8.2e-22	queuine tRNA-ribosyltransferase	moron, auxiliary metabolic gene and host takeover
eggNOG-mapper	UHGV-0059213_3	59241.E7DN71_BPDP1	80.5	0.0000000000000205	tRNA modification	N/A
structural_annotation	UHGV-0059213_3	PF00290,MF_01634,TIGR00432,COG0343	N/A	N/A	N/A	N/A
KOfam	UHGV-0059213_4	K14440	171.5	0	SMARCAL1, HARP; SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A-like protein 1 [EC:5.6.2.-]	N/A
PHROG	UHGV-0059213_4	phrog_62	213.7	0	DNA helicase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0059213_4	UniRef90_A0A7X8ZBW6	532.0	0	DEAD/DEAH box helicase	N/A
eggNOG-mapper	UHGV-0059213_4	552396.HMPREF0863_01201	99.8	4.28e-19	SNF2 family N-terminal domain protein	N/A
PADLOC	UHGV-0059213_4	DpdE_00006	70.3	1.1e-21	DpdE	DPD
Pfam	UHGV-0059213_4	PF00176	N/A	N/A	SNF2-related domain	SNF2-rel_dom
Pfam	UHGV-0059213_4	PF00271	N/A	N/A	Helicase conserved C-terminal domain	Helicase_C
COG	UHGV-0059213_4	COG0553	N/A	N/A	Superfamily II DNA or RNA helicase, SNF2 family	N/A
structural_annotation	UHGV-0059213_4	PF00176,PF00271,MF_01821,NF038318,COG0553	N/A	N/A	N/A	N/A
KOfam	UHGV-0059213_6	K02335	399.6	0	polA; DNA polymerase I [EC:2.7.7.7]	N/A
PHROG	UHGV-0059213_6	phrog_17	357.1	0	DNA polymerase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0059213_6	UniRef90_A0A7X8ZBG5	881.0	0	DNA polymerase I	N/A
eggNOG-mapper	UHGV-0059213_6	871584.D9ZNH3_9CAUD	328.0	0	DNA polymerase family A	N/A
PADLOC	UHGV-0059213_6	drt-cluster58	124.8	5.1e-37	DRT	DRT
Pfam	UHGV-0059213_6	PF01612	N/A	N/A	3'-5' exonuclease	DNA_pol_A_exo1
Pfam	UHGV-0059213_6	PF00476	N/A	N/A	DNA polymerase family A	DNA_pol_A
structural_annotation	UHGV-0059213_6	PF00476,PF01612,MF_04101,NF004397,COG0749	N/A	N/A	N/A	N/A
KOfam	UHGV-0059213_12	K03698	43.1	0.0000000000048	cbf, cbf1; 3'-5' exoribonuclease [EC:3.1.-.-]	N/A
PHROG	UHGV-0059213_12	phrog_28876	142.0	3.09967e-42	metal-dependent phosphohydrolase	other
UniRef90	UHGV-0059213_12	UniRef90_A0A4V1G5E2	155.0	3.50325e-44	Hydrolase	N/A
eggNOG-mapper	UHGV-0059213_12	1410658.JHWI01000002_gene118	152.0	1.12104e-43	metal-dependent phosphohydrolase, HD sub domain	N/A
COG	UHGV-0059213_12	COG3481	N/A	N/A	3'-5' exoribonuclease YhaM, can participate in 23S rRNA maturation, HD superfamily	N/A
structural_annotation	UHGV-0059213_12	PF07514,MF_01427,NF010007,COG3481	N/A	N/A	N/A	N/A
KOfam	UHGV-0059213_13	K03553	172.2	0	recA; recombination protein RecA	N/A
PHROG	UHGV-0059213_13	phrog_97	185.5	0	UvsX-like recombinase	other
UniRef90	UHGV-0059213_13	UniRef90_A0A843GW54	231.0	0	RECA_3 domain-containing protein	N/A
eggNOG-mapper	UHGV-0059213_13	59241.E7DN79_BPDP1	197.0	0	DNA-dependent ATPase activity	N/A
Pfam	UHGV-0059213_13	PF00154	N/A	N/A	recA bacterial DNA recombination protein	RecA
structural_annotation	UHGV-0059213_13	PF00154,PF21096,MF_00268,TIGR02012,COG0468	N/A	N/A	N/A	N/A
PHROG	UHGV-0059213_15	phrog_1706	89.0	5e-26	CRISPR/Cas system associated	DNA, RNA and nucleotide metabolism
eggNOG-mapper	UHGV-0059213_15	871584.D9ZNH8_9CAUD	91.7	3.58e-19	nuclease activity	N/A
structural_annotation	UHGV-0059213_15	PF10926,MF_03030,TIGR00372,COG5377	N/A	N/A	N/A	N/A
PHROG	UHGV-0059213_17	phrog_21992	71.2	1.6e-20	esterase/lipase	other
UniRef90	UHGV-0059213_17	UniRef90_A0A1C6IQW1	187.0	0	Predicted lipase	N/A
eggNOG-mapper	UHGV-0059213_17	158189.SpiBuddy_1874	105.0	4.06e-25	Lipase (class 3)	N/A
Pfam	UHGV-0059213_17	PF01764	N/A	N/A	Lipase (class 3)	Lipase_3
COG	UHGV-0059213_17	COG3675	N/A	N/A	Predicted lipase	N/A
KOfam	UHGV-0059213_20	K19761	63.9	2.8e-18	GGACT; gamma-glutamylaminecyclotransferase [EC:2.3.2.-]	N/A
PHROG	UHGV-0059213_20	phrog_2520	78.1	1.2e-22	gamma-glutamyl cyclotransferase	moron, auxiliary metabolic gene and host takeover
UniRef90	UHGV-0059213_20	UniRef90_A0A0C2JKE5	63.5	0.000000000264	Gamma-glutamylcyclotransferase family protein	N/A
eggNOG-mapper	UHGV-0059213_20	273063.STK_22050	66.2	0.0000000000494	AIG2-like family	N/A
Pfam	UHGV-0059213_20	PF06094	N/A	N/A	Gamma-glutamyl cyclotransferase, AIG2-like	GGACT
COG	UHGV-0059213_20	COG2105	N/A	N/A	Predicted gamma-glutamylamine cyclotransferase YtfP, GGCT/AIG2-like family	N/A
KOfam	UHGV-0059213_24	K01520	136.6	2.2e-40	dut, DUT; dUTP pyrophosphatase [EC:3.6.1.23]	N/A
PHROG	UHGV-0059213_24	phrog_135	125.6	3.2e-37	dUTPase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0059213_24	UniRef90_A0A2P8EI12	166.0	0	dUTP pyrophosphatase	N/A
eggNOG-mapper	UHGV-0059213_24	1282887.AUJG01000016_gene1113	161.0	0	N/A	N/A
Pfam	UHGV-0059213_24	PF00692	N/A	N/A	dUTPase	dUTPase
NCBIFam	UHGV-0059213_24	TIGR00576.1	N/A	N/A	dUTP diphosphatase	N/A
COG	UHGV-0059213_24	COG0756	N/A	N/A	dUTP pyrophosphatase (dUTPase)	N/A
structural_annotation	UHGV-0059213_24	PF00692,MF_00116,TIGR00576,COG0756	N/A	N/A	N/A	N/A
KOfam	UHGV-0059213_26	K17680	68.4	7.3e-20	PEO1; twinkle protein [EC:5.6.2.3]	N/A
PHROG	UHGV-0059213_26	phrog_239	102.1	6.3e-30	DNA primase/helicase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0059213_26	UniRef90_A0A7X7EMQ9	103.0	2.59e-22	Toprim domain-containing protein	N/A
eggNOG-mapper	UHGV-0059213_26	1147137.I1TK01_9CAUD	79.7	0.00000000000002	DNA primase activity	N/A
Pfam	UHGV-0059213_26	PF13155	N/A	N/A	Toprim-like	Toprim_2
structural_annotation	UHGV-0059213_26	PF01807,PF13155,PF08275,MF_00974,TIGR01391,COG0358	N/A	N/A	N/A	N/A
KOfam	UHGV-0059213_27	K02314	121.6	7.9e-36	dnaB; replicative DNA helicase [EC:5.6.2.3]	N/A
PHROG	UHGV-0059213_27	phrog_19	155.1	0	DnaB-like replicative helicase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0059213_27	UniRef90_A0A843GXK0	144.0	5.11e-36	SF4 helicase domain-containing protein	N/A
eggNOG-mapper	UHGV-0059213_27	59241.E7DND1_BPDP1	134.0	2.41e-32	DNA helicase activity	N/A
Pfam	UHGV-0059213_27	PF03796	N/A	N/A	DnaB-like helicase C terminal domain	DnaB_C
structural_annotation	UHGV-0059213_27	PF03796,MF_04155,TIGR00665,COG0305	N/A	N/A	N/A	N/A
PHROG	UHGV-0059213_37	phrog_132	51.8	0.0000000000000045	head-tail adaptor	connector
eggNOG-mapper	UHGV-0059213_37	642492.Clole_2755	57.8	0.00000000551	N/A	N/A
PHROG	UHGV-0059213_38	phrog_29	199.6	0	major head protein	head and packaging
UniRef90	UHGV-0059213_38	UniRef90_UPI001BCA0507	268.0	0	major capsid protein	N/A
eggNOG-mapper	UHGV-0059213_38	1262449.CP6013_2085	257.0	0	Phage major capsid protein E	N/A
Pfam	UHGV-0059213_38	PF03864	N/A	N/A	Phage major capsid protein E	Phage_cap_E
structural_annotation	UHGV-0059213_38	PF03864,MF_04133,NF041162,COG4653	N/A	N/A	N/A	N/A
PHROG	UHGV-0059213_40	phrog_194	76.7	3.7e-22	head scaffolding protein	head and packaging
UniRef90	UHGV-0059213_40	UniRef90_UPI000FD6AB8D	69.3	0.0000000000259	phage scaffolding protein	N/A
eggNOG-mapper	UHGV-0059213_40	1395587.P364_0122070	57.0	0.000000131	Phage minor structural protein GP20	N/A
Pfam	UHGV-0059213_40	PF06810	N/A	N/A	Phage minor structural protein GP20	Phage_GP20
PHROG	UHGV-0059213_41	phrog_5	49.6	0.00000000000011	tail completion or Neck1 protein	connector
Pfam	UHGV-0059213_41	PF04883	N/A	N/A	Bacteriophage HK97-gp10, putative tail-component	HK97-gp10_like
PHROG	UHGV-0059213_43	phrog_115	143.2	2.79979e-42	minor head protein	head and packaging
UniRef90	UHGV-0059213_43	UniRef90_A0A6B3YML1	80.1	0.00000000000926	Primosomal protein	N/A
eggNOG-mapper	UHGV-0059213_43	568816.Acin_1381	98.2	3.2e-18	Phage Mu protein F like protein	N/A
Pfam	UHGV-0059213_43	PF04233	N/A	N/A	Phage Mu protein F like protein	Phage_Mu_F
Pfam	UHGV-0059213_43	PF06414	N/A	N/A	Zeta toxin	Zeta_toxin
NCBIFam	UHGV-0059213_43	TIGR01641.1	N/A	N/A	minor capsid protein	N/A
COG	UHGV-0059213_43	COG2369	N/A	N/A	N/A	N/A
Pfam	UHGV-0059213_46	PF13306	N/A	N/A	BspA type Leucine rich repeat region (6 copies)	LRR_5
PHROG	UHGV-0059213_48	phrog_64	121.3	2.9e-36	portal protein	head and packaging
UniRef90	UHGV-0059213_48	UniRef90_A0A8J4H2C1	86.7	0.0000000000000104	Portal protein	N/A
eggNOG-mapper	UHGV-0059213_48	743719.PaelaDRAFT_2396	82.4	0.0000000000000397	Phage portal protein, SPP1 Gp6-like	N/A
Pfam	UHGV-0059213_48	PF05133	N/A	N/A	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
structural_annotation	UHGV-0059213_48	PF05133,MF_04120,TIGR01538,COG5511	N/A	N/A	N/A	N/A
KOfam	UHGV-0059213_49	K06909	322.1	0	xtmB; phage terminase large subunit	N/A
PHROG	UHGV-0059213_49	phrog_3717	175.3	0	terminase large subunit	head and packaging
UniRef90	UHGV-0059213_49	UniRef90_E3HBR6	358.0	0	Phage terminase, large subunit, PBSX family	N/A
eggNOG-mapper	UHGV-0059213_49	1203606.HMPREF1526_00320	352.0	0	Phage terminase, large subunit, PBSX family	N/A
Pfam	UHGV-0059213_49	PF04466	N/A	N/A	Phage terminase large subunit	Terminase_3
Pfam	UHGV-0059213_49	PF17288	N/A	N/A	Terminase RNAseH like domain	Terminase_3C
NCBIFam	UHGV-0059213_49	TIGR01547.1	N/A	N/A	PBSX family phage terminase large subunit	N/A
COG	UHGV-0059213_49	COG1783	N/A	N/A	Phage terminase large subunit	N/A
structural_annotation	UHGV-0059213_49	PF04466,PF20441,MF_04145,TIGR01547,COG1783	N/A	N/A	N/A	N/A
KOfam	UHGV-0059213_56	K03091	91.5	1.3e-26	sigH; RNA polymerase sporulation-specific sigma factor	N/A
PHROG	UHGV-0059213_56	phrog_351	67.7	1.6e-24	RNA polymerase sigma factor	transcription regulation
UniRef90	UHGV-0059213_56	UniRef90_UPI0014852BBC	61.6	0.00000000945	sigma-70 family RNA polymerase sigma factor	N/A
eggNOG-mapper	UHGV-0059213_56	1552123.EP57_15825	55.8	0.000000315	Belongs to the sigma-70 factor family	N/A
Pfam	UHGV-0059213_56	PF04542	N/A	N/A	Sigma-70 region 2	Sigma70_r2
NCBIFam	UHGV-0059213_56	TIGR02937.1	N/A	N/A	sigma-70 family RNA polymerase sigma factor	N/A
COG	UHGV-0059213_56	COG1595	N/A	N/A	DNA-directed RNA polymerase specialized sigma subunit, sigma24 family	N/A
structural_annotation	UHGV-0059213_56	PF04542,PF08281,MF_00962,NF004471,COG1191	N/A	N/A	N/A	N/A
PHROG	UHGV-0059213_57	phrog_2002	92.5	3e-27	Holliday junction resolvase	DNA, RNA and nucleotide metabolism
eggNOG-mapper	UHGV-0059213_57	871584.D9ZNI6_9CAUD	69.3	0.0000000000000942	N/A	N/A
structural_annotation	UHGV-0059213_57	PF01870,MF_01490,NF040854,COG1591	N/A	N/A	N/A	N/A
KOfam	UHGV-0059213_59	K09125	103.1	3.1e-30	yhhQ; queuosine precursor transporter	N/A
PHROG	UHGV-0059213_59	phrog_4899	47.7	0.00000000000027	N/A	unknown function
UniRef90	UHGV-0059213_59	UniRef90_A0A7M1XJW7	263.0	0	VUT family protein	N/A
eggNOG-mapper	UHGV-0059213_59	869209.Tresu_0959	188.0	0	Putative vitamin uptake transporter	N/A
Pfam	UHGV-0059213_59	PF02592	N/A	N/A	Putative vitamin uptake transporter	Vut_1
COG	UHGV-0059213_59	COG1738	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0059213_59	PF02592,MF_02088,TIGR00697,COG1738	N/A	N/A	N/A	N/A
KOfam	UHGV-0059213_61	K02343	240.4	0	dnaX; DNA polymerase III subunit gamma/tau [EC:2.7.7.7]	N/A
PHROG	UHGV-0059213_61	phrog_5846	216.0	0	clamp loader of DNA polymerase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0059213_61	UniRef90_A0A1M3J0Z4	172.0	1.4013e-45	DNA polymerase III subunit gamma/tau	N/A
eggNOG-mapper	UHGV-0059213_61	638303.Thal_0911	167.0	2.8026e-45	DNA polymerase III is a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria. This DNA polymerase also exhibits 3' to 5' exonuclease activity	N/A
Pfam	UHGV-0059213_61	PF13177	N/A	N/A	DNA polymerase III, delta subunit	DNA_pol3_delta2
COG	UHGV-0059213_61	COG2812	N/A	N/A	DNA polymerase III, gamma/tau subunits	N/A
structural_annotation	UHGV-0059213_61	PF13177,PF12169,PF17864,MF_01509,NF004046,COG2812	N/A	N/A	N/A	N/A
PHROG	UHGV-0059213_64	phrog_924	46.0	0.000000000001	N/A	unknown function
Pfam	UHGV-0059213_64	PF04448	N/A	N/A	N/A	DUF551
structural_annotation	UHGV-0059213_68	PF13641,MF_00057,TIGR03965,COG1216	N/A	N/A	N/A	N/A

All viral genomes

ID	Representative?	Length (bps)	% GC Content	CheckV Completeness	geNomad Score
UHGV-0059213	Yes	45,924	48	59	1