vOTU vOTU-101258

vOTU: vOTU-101258

Overview

Genome (FASTA) Annotation Track (GFF) Proteins (FASTA) Protein Annotation (TSV)

Cluster properties
vOTU ID	vOTU-101258
Number of genomes	1
Taxonomy (ICTV)	Bacteria → Firmicutes_A → Clostridia → Oscillospirales → Ruminococcaceae → Ruthenibacterium → Ruthenibacterium lactatiformans
Taxonomy (UHGV)	vFAM-00006 → vSUBFAM-03926 → vOTU-101258
Host lineage	Bacteria → Firmicutes_A → Clostridia → Oscillospirales → Ruminococcaceae → Ruthenibacterium → Ruthenibacterium lactatiformans
Host range breadth	Species
Lifestyle	temperate (Evidence: BACPHLIP)

Representative genome
Genome ID	UHGV-0044874
Biosample ID	N/A
Genome length (bp)	22,258 bps
CheckV completeness	61.36% (Medium-quality)
CDS count	32
CDS density	93.45%
tRNA count	1
Integrase	No
Viral confidence	Confident

Host assignment details
Assignment method	CRISPR
CRISPR-predicted host lineage	Bacteria → Firmicutes_A → Clostridia → Oscillospirales → Ruminococcaceae → Ruthenibacterium → Ruthenibacterium lactatiformans	Total connections	75	Host agreement	93.33
PHIST-predicted host lineage	Bacteria → Firmicutes_A → Clostridia → Oscillospirales → Ruminococcaceae → Ruthenibacterium → Ruthenibacterium lactatiformans	Total connections	5	Host agreement	100

Representative genome content

Select to view: Genome Viewer Functional Annotation

Genome view (completeness: 61.36)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
PHROG	UHGV-0044874_2	phrog_12732	41.8	0.00000000000051	N/A	unknown function
AcrCatalog	UHGV-0044874_2	cluster_25206	44.3	0.0000000144	NA	N/A
PHROG	UHGV-0044874_3	phrog_1129	69.6	3.5e-20	holin	lysis
UniRef90	UHGV-0044874_3	UniRef90_A0A0D8J2M2	176.0	0	Enolase	N/A
eggNOG-mapper	UHGV-0044874_3	665956.HMPREF1032_03272	158.0	0	Phage holin family Hol44, in holin superfamily V	N/A
Pfam	UHGV-0044874_3	PF16079	N/A	N/A	Phage holin family Hol44, in holin superfamily V	Phage_holin_5_2
structural_annotation	UHGV-0044874_3	PF06946	N/A	N/A	N/A	N/A
PHROG	UHGV-0044874_4	phrog_4105	94.3	8.9e-28	N/A	unknown function
eggNOG-mapper	UHGV-0044874_4	657322.FPR_27220	113.0	2.34e-31	N/A	N/A
KOfam	UHGV-0044874_5	K19304	96.0	5.4e-28	mepM; murein DD-endopeptidase [EC:3.4.24.-]	N/A
PHROG	UHGV-0044874_5	phrog_7767	96.0	2.8e-28	metallo-endopeptidase	other
UniRef90	UHGV-0044874_5	UniRef90_A0A3A6EBG8	466.0	0	M23 family peptidase	N/A
eggNOG-mapper	UHGV-0044874_5	1041147.AUFB01000010_gene1454	90.1	4.81e-18	Membrane proteins related to metalloendopeptidases	N/A
Pfam	UHGV-0044874_5	PF01551	N/A	N/A	Peptidase family M23	Peptidase_M23
COG	UHGV-0044874_5	COG0739	N/A	N/A	Murein DD-endopeptidase MepM and murein hydrolase activator NlpD, contains LysM domain	N/A
structural_annotation	UHGV-0044874_5	PF01551,NF040883,COG0739,COG5492	N/A	N/A	N/A	N/A
PHROG	UHGV-0044874_6	phrog_16573	58.0	9.6e-17	N/A	unknown function
UniRef90	UHGV-0044874_6	UniRef90_A0A0D8IYB2	585.0	0	BppU_N domain-containing protein	N/A
Pfam	UHGV-0044874_6	PF10651	N/A	N/A	BppU N-terminal domain	BppU_N
structural_annotation	UHGV-0044874_6	PF10651	N/A	N/A	N/A	N/A
PHROG	UHGV-0044874_7	phrog_1067	375.4	0	minor head protein	head and packaging
UniRef90	UHGV-0044874_7	UniRef90_A0A0D8IVK1	909.0	0	Prophage_tail domain-containing protein	N/A
eggNOG-mapper	UHGV-0044874_7	1123263.AUKY01000068_gene489	405.0	0	Phage minor structural protein	N/A
Pfam	UHGV-0044874_7	PF06605	N/A	N/A	Prophage endopeptidase tail	Prophage_tail
NCBIFam	UHGV-0044874_7	TIGR01665.1	N/A	N/A	phage tail spike protein	N/A
COG	UHGV-0044874_7	COG4926	N/A	N/A	Phage-related protein	N/A
structural_annotation	UHGV-0044874_7	PF14594,TIGR01665,COG4926	N/A	N/A	N/A	N/A
UniRef90	UHGV-0044874_8	UniRef90_A0A1C6H6D2	186.0	0	Phage-related protein	N/A
eggNOG-mapper	UHGV-0044874_8	1032362.F6K8S1_9CAUD	111.0	4.21e-27	Phage tail protein	N/A
structural_annotation	UHGV-0044874_8	PF20195,TIGR01633,COG4722	N/A	N/A	N/A	N/A
PHROG	UHGV-0044874_9	phrog_1272	102.0	0	tail length tape measure protein	tail
UniRef90	UHGV-0044874_9	UniRef90_A0A1Y4R6K5	302.0	0	PhageMin_Tail domain-containing protein	N/A
eggNOG-mapper	UHGV-0044874_9	1140001.I571_01843	191.0	0	phage tail tape measure protein	N/A
COG	UHGV-0044874_9	COG5412	N/A	N/A	Phage-related protein	N/A
structural_annotation	UHGV-0044874_9	PF20155,COG5280	N/A	N/A	N/A	N/A
PHROG	UHGV-0044874_11	phrog_88	100.8	1.3e-29	major tail protein	tail
UniRef90	UHGV-0044874_11	UniRef90_G9YSC5	129.0	5.54e-34	Phage major tail protein, phi13 family	N/A
NCBIFam	UHGV-0044874_11	TIGR01603.1	N/A	N/A	major tail protein	N/A
COG	UHGV-0044874_11	COG5492	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0044874_11	PF04630,TIGR01603,COG3498	N/A	N/A	N/A	N/A
PHROG	UHGV-0044874_12	phrog_5	43.0	0.0000000000096	tail completion or Neck1 protein	connector
UniRef90	UHGV-0044874_12	UniRef90_A0A1C6FG30	143.0	1.31e-40	Phage protein, HK97 gp10 family	N/A
eggNOG-mapper	UHGV-0044874_12	1235798.C817_04589	107.0	1.99e-27	N/A	N/A
NCBIFam	UHGV-0044874_12	TIGR01725.1	N/A	N/A	HK97-gp10 family putative phage morphogenesis protein	N/A
structural_annotation	UHGV-0044874_12	TIGR01725	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0044874_13	1235798.C817_04588	90.1	5.24e-22	N/A	N/A
structural_annotation	UHGV-0044874_13	PF05657,COG3167	N/A	N/A	N/A	N/A
PHROG	UHGV-0044874_14	phrog_19734	128.6	3e-38	N/A	unknown function
UniRef90	UHGV-0044874_14	UniRef90_A0A6I7GNS7	154.0	1.4013e-45	Phage head closure protein	N/A
eggNOG-mapper	UHGV-0044874_14	349161.Dred_2602	84.0	3.95e-19	N/A	N/A
structural_annotation	UHGV-0044874_14	PF05521,TIGR01563,COG5614	N/A	N/A	N/A	N/A
PHROG	UHGV-0044874_15	phrog_749	69.1	5.7e-20	N/A	unknown function
eggNOG-mapper	UHGV-0044874_15	349161.Dred_2603	94.0	1.22e-23	N/A	N/A
PHROG	UHGV-0044874_16	phrog_10	150.7	1.54143e-44	major head protein	head and packaging
UniRef90	UHGV-0044874_16	UniRef90_G9YSC0	742.0	0	Cadherin-like domain-containing protein	N/A
eggNOG-mapper	UHGV-0044874_16	1235792.C808_00086	464.0	0	Phage capsid family	N/A
Pfam	UHGV-0044874_16	PF05065	N/A	N/A	Phage capsid family	Phage_capsid
Pfam	UHGV-0044874_16	PF12733	N/A	N/A	Cadherin-like beta sandwich domain	Cadherin-like
NCBIFam	UHGV-0044874_16	TIGR01554.2	N/A	N/A	phage major capsid protein	N/A
COG	UHGV-0044874_16	COG4653	N/A	N/A	Predicted phage phi-C31 gp36 major capsid-like protein	N/A
structural_annotation	UHGV-0044874_16	PF05065,PF12733,MF_04119,TIGR01554,COG4653	N/A	N/A	N/A	N/A
KOfam	UHGV-0044874_17	K01358	128.1	7.3e-38	clpP, CLPP; ATP-dependent Clp protease, protease subunit [EC:3.4.21.92]	N/A
PHROG	UHGV-0044874_17	phrog_94	219.4	0	head maturation protease	head and packaging
UniRef90	UHGV-0044874_17	UniRef90_A0A3A6E5J4	377.0	0	DNA helicase	N/A
eggNOG-mapper	UHGV-0044874_17	349161.Dred_2605	222.0	0	Belongs to the peptidase S14 family	N/A
Pfam	UHGV-0044874_17	PF00772	N/A	N/A	DnaB-like helicase N terminal domain	DnaB
Pfam	UHGV-0044874_17	PF00574	N/A	N/A	Clp protease	CLP_protease
COG	UHGV-0044874_17	COG0740	N/A	N/A	ATP-dependent protease ClpP, protease subunit	N/A
PHROG	UHGV-0044874_18	phrog_20437	157.2	0	DNA replication initiation	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0044874_18	UniRef90_A0A3A6E2X3	498.0	0	N/A	N/A
eggNOG-mapper	UHGV-0044874_18	97138.C820_00626	193.0	0	N/A	N/A
Pfam	UHGV-0044874_18	PF14297	N/A	N/A	Lin1244/Lin1753-like, N-terminal	Lin1244_N
COG	UHGV-0044874_18	COG3935	N/A	N/A	DNA replication protein DnaD	N/A
structural_annotation	UHGV-0044874_18	PF14297	N/A	N/A	N/A	N/A
KOfam	UHGV-0044874_19	K03111	134.0	1.8e-39	ssb; single-strand DNA-binding protein	N/A
PHROG	UHGV-0044874_19	phrog_44	139.5	2.29995e-41	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0044874_19	UniRef90_A0A3A6ECW8	290.0	0	Single-stranded DNA-binding protein	N/A
eggNOG-mapper	UHGV-0044874_19	665956.HMPREF1032_00430	191.0	0	Single-stranded DNA-binding protein	N/A
Pfam	UHGV-0044874_19	PF00436	N/A	N/A	Single-strand binding protein family	SSB
NCBIFam	UHGV-0044874_19	TIGR00621.2	N/A	N/A	single-stranded DNA-binding protein	N/A
COG	UHGV-0044874_19	COG0629	N/A	N/A	Single-stranded DNA-binding protein	N/A
HAMAP	UHGV-0044874_19	MF_00984	N/A	N/A	Single-stranded DNA-binding protein	N/A
structural_annotation	UHGV-0044874_19	PF00436,MF_00984,NF005241,COG0629	N/A	N/A	N/A	N/A
PHROG	UHGV-0044874_20	phrog_7566	83.1	2.4e-24	N/A	unknown function
UniRef90	UHGV-0044874_20	UniRef90_A0A8D9UHC0	89.4	4.23e-21	Recombination enhancement function protein nuclease	N/A
eggNOG-mapper	UHGV-0044874_20	693746.OBV_25470	103.0	4.4e-27	N/A	N/A
PHROG	UHGV-0044874_21	phrog_72	60.1	3.1e-17	NinB/ Orf homologous recombination mediator	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0044874_21	UniRef90_UPI001F3F3E5C	88.2	7.26e-19	recombination protein NinB	N/A
eggNOG-mapper	UHGV-0044874_21	1304866.K413DRAFT_1197	91.3	8.26e-21	N/A	N/A
PHROG	UHGV-0044874_22	phrog_7838	129.6	2.4e-38	exonuclease	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0044874_22	UniRef90_A0A8D9UGW3	191.0	0	DNA repair protein RAD52-like protein	N/A
eggNOG-mapper	UHGV-0044874_22	742767.HMPREF9456_02052	151.0	4.38606e-43	N/A	N/A
structural_annotation	UHGV-0044874_22	PF04098,TIGR00607,COG4380	N/A	N/A	N/A	N/A
PHROG	UHGV-0044874_24	phrog_1123	50.0	0.000000000000044	N/A	unknown function
structural_annotation	UHGV-0044874_24	PF02002,MF_01804,NF040939,COG3355	N/A	N/A	N/A	N/A
AcrCatalog	UHGV-0044874_25	cluster_35670	155.0	0	NA	N/A
structural_annotation	UHGV-0044874_25	NF042413	N/A	N/A	N/A	N/A
UniRef90	UHGV-0044874_26	UniRef90_D4JVL4	48.9	0.00000437	DNA binding domain, excisionase family	N/A
eggNOG-mapper	UHGV-0044874_26	485913.Krac_11241	46.2	0.00000946	DNA excision	N/A
Pfam	UHGV-0044874_26	PF12728	N/A	N/A	Helix-turn-helix domain	HTH_17
NCBIFam	UHGV-0044874_26	TIGR01764.1	N/A	N/A	excisionase family DNA-binding protein	N/A
COG	UHGV-0044874_26	COG3311	N/A	N/A	DNA-binding transcriptional regulator AlpA	N/A
UniRef90	UHGV-0044874_27	UniRef90_UPI001CD6A7E5	75.1	1.78e-16	helix-turn-helix domain-containing protein	N/A
eggNOG-mapper	UHGV-0044874_27	718252.FP2_06860	92.4	4.12e-24	N/A	N/A
Pfam	UHGV-0044874_27	PF13443	N/A	N/A	Cro/C1-type HTH DNA-binding domain	HTH_26
structural_annotation	UHGV-0044874_27	PF21291,NF041951,COG1476	N/A	N/A	N/A	N/A
KOfam	UHGV-0044874_28	K01356	155.8	0	lexA; repressor LexA [EC:3.4.21.88]	N/A
PHROG	UHGV-0044874_28	phrog_4	122.2	5.6e-36	transcriptional repressor	transcription regulation
UniRef90	UHGV-0044874_28	UniRef90_A0A564U5Z2	236.0	0	LexA repressor	N/A
eggNOG-mapper	UHGV-0044874_28	718252.FP2_06870	237.0	0	Represses a number of genes involved in the response to DNA damage (SOS response), including recA and lexA. In the presence of single-stranded DNA, RecA interacts with LexA causing an autocatalytic cleavage which disrupts the DNA-binding part of LexA, leading to derepression of the SOS regulon and eventually DNA repair	N/A
Pfam	UHGV-0044874_28	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
Pfam	UHGV-0044874_28	PF00717	N/A	N/A	Peptidase S24-like	Peptidase_S24
COG	UHGV-0044874_28	COG1974	N/A	N/A	SOS-response transcriptional repressor LexA (RecA-mediated autopeptidase)	N/A
structural_annotation	UHGV-0044874_28	PF00717,PF12844,MF_00015,TIGR00498,COG1974	N/A	N/A	N/A	N/A
KOfam	UHGV-0044874_30	K14059	210.0	0	int; integrase	N/A
PHROG	UHGV-0044874_30	phrog_1	204.7	0	integrase	integration and excision
UniRef90	UHGV-0044874_30	UniRef90_UPI00195DFC45	537.0	0	site-specific integrase	N/A
eggNOG-mapper	UHGV-0044874_30	748224.HMPREF9436_01375	391.0	0	Phage integrase family	N/A
Pfam	UHGV-0044874_30	PF00589	N/A	N/A	Phage integrase family	Phage_integrase
COG	UHGV-0044874_30	COG0582	N/A	N/A	Integrase/recombinase, includes phage integrase	N/A
structural_annotation	UHGV-0044874_30	PF00589,PF14659,MF_02055,TIGR02224,COG4974	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0044874_31	537013.CLOSTMETH_00790	80.1	1.74e-16	Prolyl oligopeptidase family	N/A
COG	UHGV-0044874_31	COG1073	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0044874_32	537013.CLOSTMETH_00789	137.0	2.68e-39	Pyrimidine reductase, riboflavin	N/A
COG	UHGV-0044874_32	COG1985	N/A	N/A	Pyrimidine reductase, riboflavin biosynthesis	N/A

All viral genomes

ID	Representative?	Length (bps)	% GC Content	CheckV Completeness	geNomad Score
UHGV-0044874	Yes	22,258	47	61	1