vOTU vOTU-101617

vOTU: vOTU-101617

Overview

Genome (FASTA) Annotation Track (GFF) Proteins (FASTA) Protein Annotation (TSV)

Cluster properties
vOTU ID	vOTU-101617
Number of genomes	1
Taxonomy (ICTV)	Bacteria → Firmicutes_A → Clostridia → Oscillospirales → Ruminococcaceae → Gemmiger → Gemmiger formicilis
Taxonomy (UHGV)	vFAM-00022 → vSUBFAM-00313 → vGENUS-02731 → vOTU-101617
Host lineage	Bacteria → Firmicutes_A → Clostridia → Oscillospirales → Ruminococcaceae → Gemmiger → Gemmiger formicilis
Host range breadth	Species
Lifestyle	temperate (Evidence: BACPHLIP)

Representative genome
Genome ID	UHGV-0040911
Biosample ID	SAMEA4969161
Genome length (bp)	28,068 bps
CheckV completeness	74.42% (Medium-quality)
CDS count	42
CDS density	91.43%
tRNA count	1
Integrase	No
Viral confidence	Confident

Host assignment details
Assignment method	CRISPR
CRISPR-predicted host lineage	Bacteria → Firmicutes_A → Clostridia → Oscillospirales → Ruminococcaceae → Gemmiger → Gemmiger formicilis	Total connections	182	Host agreement	77.47
PHIST-predicted host lineage	Bacteria → Firmicutes_A → Clostridia → Oscillospirales → Ruminococcaceae → Gemmiger → Gemmiger formicilis	Total connections	2	Host agreement	100

Representative genome content

Select to view: Genome Viewer Functional Annotation

Genome view (completeness: 74.42)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
UniRef90	UHGV-0040911_2	UniRef90_UPI000C79F998	78.2	0.00000000000356	H-type lectin domain-containing protein	N/A
structural_annotation	UHGV-0040911_2	PF10651,NF041074	N/A	N/A	N/A	N/A
PHROG	UHGV-0040911_3	phrog_5717	58.9	8.6e-18	tail protein	tail
UniRef90	UHGV-0040911_3	UniRef90_UPI0011EBDD10	59.7	0.000000016	tail fiber protein	N/A
eggNOG-mapper	UHGV-0040911_3	508419.F8J176_9CAUD	99.4	1.96e-22	peptidoglycan catabolic process	N/A
structural_annotation	UHGV-0040911_3	COG4675	N/A	N/A	N/A	N/A
KOfam	UHGV-0040911_5	K10062	90.1	1.6e-26	COLEC12; collectin sub-family member 12	N/A
PHROG	UHGV-0040911_5	phrog_6320	139.1	5.19994e-41	tail fiber protein	tail
eggNOG-mapper	UHGV-0040911_5	1120998.AUFC01000030_gene2248	83.2	0.000000000000101	N/A	N/A
Pfam	UHGV-0040911_5	PF01391	N/A	N/A	Collagen triple helix repeat (20 copies)	Collagen
KOfam	UHGV-0040911_7	K07273	135.8	4.6e-40	acm; lysozyme	N/A
PHROG	UHGV-0040911_7	phrog_291	98.7	6e-29	endolysin	lysis
UniRef90	UHGV-0040911_7	UniRef90_A0A1Q6T343	458.0	0	Peptidase_M23 domain-containing protein	N/A
eggNOG-mapper	UHGV-0040911_7	877424.ATWC01000009_gene1193	129.0	3.17e-29	Glycosyl hydrolases family 25	N/A
Pfam	UHGV-0040911_7	PF01551	N/A	N/A	Peptidase family M23	Peptidase_M23
Pfam	UHGV-0040911_7	PF01183	N/A	N/A	Glycosyl hydrolases family 25	Glyco_hydro_25
COG	UHGV-0040911_7	COG3757	N/A	N/A	Lyzozyme M1 (1,4-beta-N-acetylmuramidase), GH25 family	N/A
structural_annotation	UHGV-0040911_7	PF01551,PF01183,NF040883,COG0739,COG3757	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0040911_8	33035.JPJF01000090_gene94	67.8	0.000000000000188	N/A	N/A
PHROG	UHGV-0040911_9	phrog_1129	82.3	3.4e-24	holin	lysis
UniRef90	UHGV-0040911_9	UniRef90_UPI00051B7422	97.8	1.41e-24	phage holin family protein	N/A
eggNOG-mapper	UHGV-0040911_9	411460.RUMTOR_01325	94.0	7.86e-24	Phage holin family Hol44, in holin superfamily V	N/A
Pfam	UHGV-0040911_9	PF16079	N/A	N/A	Phage holin family Hol44, in holin superfamily V	Phage_holin_5_2
structural_annotation	UHGV-0040911_9	PF16079	N/A	N/A	N/A	N/A
Pfam	UHGV-0040911_10	PF00196	N/A	N/A	Bacterial regulatory proteins, luxR family	GerE
structural_annotation	UHGV-0040911_10	PF04545,MF_00245,NF001067,COG2771	N/A	N/A	N/A	N/A
PHROG	UHGV-0040911_12	phrog_16490	56.0	9.3e-16	N/A	unknown function
eggNOG-mapper	UHGV-0040911_12	397290.C810_05212	58.2	0.000000214	N/A	N/A
structural_annotation	UHGV-0040911_13	PF18573,NF033147	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0040911_14	1378168.N510_03079	79.7	8.38e-16	N/A	N/A
KOfam	UHGV-0040911_15	K14059	213.2	0	int; integrase	N/A
PHROG	UHGV-0040911_15	phrog_1	212.7	0	integrase	integration and excision
UniRef90	UHGV-0040911_15	UniRef90_UPI00195B6EEA	445.0	0	site-specific integrase	N/A
eggNOG-mapper	UHGV-0040911_15	1235797.C816_00779	178.0	0	Phage integrase family	N/A
Pfam	UHGV-0040911_15	PF14659	N/A	N/A	Phage integrase, N-terminal SAM-like domain	Phage_int_SAM_3
Pfam	UHGV-0040911_15	PF00589	N/A	N/A	Phage integrase family	Phage_integrase
COG	UHGV-0040911_15	COG4974	N/A	N/A	Site-specific recombinase XerD	N/A
structural_annotation	UHGV-0040911_15	PF00589,PF14659,MF_02055,TIGR02224,COG4974	N/A	N/A	N/A	N/A
KOfam	UHGV-0040911_18	K18830	64.7	1.6e-18	pezA; HTH-type transcriptional regulator / antitoxin PezA	N/A
PHROG	UHGV-0040911_18	phrog_2967	49.6	0.000000000000069	transcriptional regulator	transcription regulation
UniRef90	UHGV-0040911_18	UniRef90_A0A844DFR0	170.0	0	Helix-turn-helix domain-containing protein	N/A
eggNOG-mapper	UHGV-0040911_18	748224.HMPREF9436_01444	155.0	0	N/A	N/A
Pfam	UHGV-0040911_18	PF12844	N/A	N/A	Helix-turn-helix domain	HTH_19
COG	UHGV-0040911_18	COG1396	N/A	N/A	Transcriptional regulator, contains XRE-family HTH domain	N/A
structural_annotation	UHGV-0040911_18	PF01381,MF_00535,NF041951,COG1476	N/A	N/A	N/A	N/A
Pfam	UHGV-0040911_22	PF12728	N/A	N/A	Helix-turn-helix domain	HTH_17
structural_annotation	UHGV-0040911_22	PF12728,TIGR01764,COG3311	N/A	N/A	N/A	N/A
PHROG	UHGV-0040911_23	phrog_10280	50.5	0.00000000000002	N/A	unknown function
eggNOG-mapper	UHGV-0040911_23	903814.ELI_0195	53.5	0.000000932	N/A	N/A
COG	UHGV-0040911_24	COG4712	N/A	N/A	Predicted ssDNA annealing protein, contains HHH motif, Rad42/Rad22/RecT/erf family	N/A
structural_annotation	UHGV-0040911_24	PF04098,TIGR00607,COG4712	N/A	N/A	N/A	N/A
PHROG	UHGV-0040911_25	phrog_72	62.5	7.1e-18	NinB/ Orf homologous recombination mediator	DNA, RNA and nucleotide metabolism
eggNOG-mapper	UHGV-0040911_25	411471.SUBVAR_05829	224.0	0	N/A	N/A
Pfam	UHGV-0040911_25	PF05772	N/A	N/A	NinB protein	NinB
structural_annotation	UHGV-0040911_25	PF05772,NF007281	N/A	N/A	N/A	N/A
COG	UHGV-0040911_26	COG1327	N/A	N/A	Transcriptional regulator NrdR, contains Zn-ribbon and ATP-cone domains	N/A
structural_annotation	UHGV-0040911_26	PF04606,NF007241	N/A	N/A	N/A	N/A
PHROG	UHGV-0040911_27	phrog_7566	75.6	4.7e-22	N/A	unknown function
eggNOG-mapper	UHGV-0040911_27	411471.SUBVAR_05830	114.0	5.88e-32	N/A	N/A
PHROG	UHGV-0040911_29	phrog_997	113.4	1.5e-33	replication terminator	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0040911_29	UniRef90_UPI001165C3F9	80.5	4.78e-17	replication terminator protein	N/A
eggNOG-mapper	UHGV-0040911_29	411471.SUBVAR_05832	160.0	0	N/A	N/A
PHROG	UHGV-0040911_30	phrog_1029	190.9	0	N/A	unknown function
eggNOG-mapper	UHGV-0040911_30	411471.SUBVAR_05833	230.0	0	N/A	N/A
structural_annotation	UHGV-0040911_30	PF10065,COG5532	N/A	N/A	N/A	N/A
KOfam	UHGV-0040911_31	K03111	131.2	1.3e-38	ssb; single-strand DNA-binding protein	N/A
PHROG	UHGV-0040911_31	phrog_44	139.6	1.99993e-41	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0040911_31	UniRef90_A0A1Q6T3F1	258.0	0	Single-stranded DNA-binding protein	N/A
eggNOG-mapper	UHGV-0040911_31	411471.SUBVAR_04646	181.0	0	Single-stranded DNA-binding protein	N/A
Pfam	UHGV-0040911_31	PF00436	N/A	N/A	Single-strand binding protein family	SSB
NCBIFam	UHGV-0040911_31	TIGR00621.2	N/A	N/A	single-stranded DNA-binding protein	N/A
COG	UHGV-0040911_31	COG0629	N/A	N/A	Single-stranded DNA-binding protein	N/A
HAMAP	UHGV-0040911_31	MF_00984	N/A	N/A	Single-stranded DNA-binding protein	N/A
structural_annotation	UHGV-0040911_31	PF00436,MF_00984,NF005241,COG0629	N/A	N/A	N/A	N/A
PHROG	UHGV-0040911_32	phrog_270	147.6	1.09301e-43	replication initiation protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0040911_32	UniRef90_UPI000F632BBD	156.0	2.14399e-43	helix-turn-helix domain-containing protein	N/A
eggNOG-mapper	UHGV-0040911_32	742738.HMPREF9460_00851	119.0	1.16e-29	Helix-turn-helix domain	N/A
Pfam	UHGV-0040911_32	PF13730	N/A	N/A	Helix-turn-helix domain	HTH_36
COG	UHGV-0040911_32	COG3935	N/A	N/A	DNA replication protein DnaD	N/A
structural_annotation	UHGV-0040911_32	PF02295,MF_01819,TIGR04176,COG3355	N/A	N/A	N/A	N/A
KOfam	UHGV-0040911_33	K02314	208.3	0	dnaB; replicative DNA helicase [EC:5.6.2.3]	N/A
PHROG	UHGV-0040911_33	phrog_19	193.1	0	DnaB-like replicative helicase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0040911_33	UniRef90_D1PNB9	487.0	0	DNA helicase	N/A
eggNOG-mapper	UHGV-0040911_33	411471.SUBVAR_05838	487.0	0	Participates in initiation and elongation during chromosome replication	N/A
Pfam	UHGV-0040911_33	PF00772	N/A	N/A	DnaB-like helicase N terminal domain	DnaB
Pfam	UHGV-0040911_33	PF03796	N/A	N/A	DnaB-like helicase C terminal domain	DnaB_C
COG	UHGV-0040911_33	COG0305	N/A	N/A	Replicative DNA helicase	N/A
structural_annotation	UHGV-0040911_33	PF03796,PF00772,MF_04155,TIGR00665,COG0305	N/A	N/A	N/A	N/A
KOfam	UHGV-0040911_34	K03496	226.7	0	parA, soj; chromosome partitioning protein	N/A
PHROG	UHGV-0040911_34	phrog_164	164.9	0	ParA-like partition protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0040911_34	UniRef90_A0A1Q6T3I8	501.0	0	AAA_31 domain-containing protein	N/A
eggNOG-mapper	UHGV-0040911_34	411471.SUBVAR_05839	288.0	0	AAA domain	N/A
Pfam	UHGV-0040911_34	PF13614	N/A	N/A	AAA domain	AAA_31
COG	UHGV-0040911_34	COG1192	N/A	N/A	ParA-like ATPase involved in chromosome/plasmid partitioning or cellulose biosynthesis protein BcsQ	N/A
structural_annotation	UHGV-0040911_34	PF13614,MF_00533,TIGR03453,COG1192	N/A	N/A	N/A	N/A
KOfam	UHGV-0040911_35	K03497	92.7	7.5e-27	parB, spo0J; ParB family transcriptional regulator, chromosome partitioning protein	N/A
PHROG	UHGV-0040911_35	phrog_4715	134.4	6.89999e-40	ParB-like partition protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0040911_35	UniRef90_A0A1Q6T350	834.0	0	ParB domain-containing protein	N/A
eggNOG-mapper	UHGV-0040911_35	411471.SUBVAR_05842	377.0	0	ParB-like nuclease domain	N/A
Pfam	UHGV-0040911_35	PF02195	N/A	N/A	ParB/Sulfiredoxin domain	ParBc
COG	UHGV-0040911_35	COG1475	N/A	N/A	Chromosome segregation protein Spo0J, contains ParB-like nuclease domain	N/A
structural_annotation	UHGV-0040911_35	PF02195,MF_02015,TIGR04285,COG1475	N/A	N/A	N/A	N/A
PHROG	UHGV-0040911_36	phrog_36	73.5	3.6e-21	transcriptional regulator	transcription regulation
UniRef90	UHGV-0040911_36	UniRef90_A0A353BRJ1	92.0	3.52e-21	Sigma70_r4 domain-containing protein	N/A
eggNOG-mapper	UHGV-0040911_36	411471.SUBVAR_05843	119.0	1.62e-32	N/A	N/A
structural_annotation	UHGV-0040911_36	PF07374,MF_00245,TIGR02980,COG2739	N/A	N/A	N/A	N/A
PHROG	UHGV-0040911_37	phrog_21498	296.4	0	N/A	unknown function
eggNOG-mapper	UHGV-0040911_37	78346.BRUM_0376	245.0	0	DNA binding	N/A
COG	UHGV-0040911_37	COG1475	N/A	N/A	Chromosome segregation protein Spo0J, contains ParB-like nuclease domain	N/A
structural_annotation	UHGV-0040911_37	PF05869,TIGR01712	N/A	N/A	N/A	N/A
PHROG	UHGV-0040911_38	phrog_119	52.6	0.0000000000000067	HNH endonuclease	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0040911_38	UniRef90_A0A350U006	132.0	6.71e-38	HNH domain-containing protein	N/A
eggNOG-mapper	UHGV-0040911_38	573061.Clocel_2442	111.0	1.61e-30	HNH endonuclease	N/A
Pfam	UHGV-0040911_38	PF01844	N/A	N/A	HNH endonuclease	HNH
COG	UHGV-0040911_38	COG1403	N/A	N/A	5-methylcytosine-specific restriction endonuclease McrA	N/A
PHROG	UHGV-0040911_39	phrog_1066	80.3	1.6e-23	N/A	unknown function
eggNOG-mapper	UHGV-0040911_39	1196322.A370_05721	87.8	1.52e-20	N/A	N/A
structural_annotation	UHGV-0040911_39	PF05119,TIGR01558	N/A	N/A	N/A	N/A
PHROG	UHGV-0040911_40	phrog_9	362.3	0	terminase large subunit	head and packaging
UniRef90	UHGV-0040911_40	UniRef90_C4GAS7	803.0	0	Putative phage terminase, large subunit	N/A
eggNOG-mapper	UHGV-0040911_40	626523.GCWU000342_01028	803.0	0	Phage terminase-like protein large subunit	N/A
Pfam	UHGV-0040911_40	PF03354	N/A	N/A	Terminase large subunit, ATPase domain	TerL_ATPase
Pfam	UHGV-0040911_40	PF20441	N/A	N/A	Terminase large subunit, endonuclease domain	TerL_nuclease
COG	UHGV-0040911_40	COG4626	N/A	N/A	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	N/A
structural_annotation	UHGV-0040911_40	PF20441,PF03354,MF_04145,TIGR01547,COG4626	N/A	N/A	N/A	N/A
PHROG	UHGV-0040911_41	phrog_12	170.9	0	portal protein	head and packaging
UniRef90	UHGV-0040911_41	UniRef90_A0A3B8U1I5	563.0	0	Phage portal protein	N/A
eggNOG-mapper	UHGV-0040911_41	626523.GCWU000342_01027	538.0	0	Portal protein	N/A
Pfam	UHGV-0040911_41	PF04860	N/A	N/A	Phage portal protein	Phage_portal
COG	UHGV-0040911_41	COG4695	N/A	N/A	Phage portal protein BeeE	N/A
structural_annotation	UHGV-0040911_41	PF04860,MF_04135,TIGR01537,COG4695	N/A	N/A	N/A	N/A
KOfam	UHGV-0040911_42	K01358	141.5	8.29989e-42	clpP, CLPP; ATP-dependent Clp protease, protease subunit [EC:3.4.21.92]	N/A
PHROG	UHGV-0040911_42	phrog_94	211.7	0	head maturation protease	head and packaging
UniRef90	UHGV-0040911_42	UniRef90_A0A355BJ21	237.0	0	ATP-dependent Clp protease proteolytic subunit	N/A
eggNOG-mapper	UHGV-0040911_42	626523.GCWU000342_01026	196.0	0	Belongs to the peptidase S14 family	N/A
Pfam	UHGV-0040911_42	PF00574	N/A	N/A	Clp protease	CLP_protease
COG	UHGV-0040911_42	COG0740	N/A	N/A	ATP-dependent protease ClpP, protease subunit	N/A
structural_annotation	UHGV-0040911_42	PF00574,MF_00444,NF011091,COG0740	N/A	N/A	N/A	N/A

All viral genomes

ID	Representative?	Length (bps)	% GC Content	CheckV Completeness	geNomad Score
UHGV-0040911	Yes	28,068	59	74	1