vOTU vOTU-101994

vOTU: vOTU-101994

Overview

Genome (FASTA) Annotation Track (GFF) Proteins (FASTA) Protein Annotation (TSV)

Cluster properties
vOTU ID	vOTU-101994
Number of genomes	1
Taxonomy (ICTV)
Taxonomy (UHGV)	vFAM-00003 → vSUBFAM-00753 → vGENUS-03030 → vOTU-101994
Host lineage	Bacteria → Firmicutes_A → Clostridia → Oscillospirales
Host range breadth	Order
Lifestyle	temperate (Evidence: integrase)

Representative genome
Genome ID	UHGV-0019063
Biosample ID	N/A
Genome length (bp)	35,535 bps
CheckV completeness	88.74% (Medium-quality)
CDS count	59
CDS density	95.03%
tRNA count	0
Integrase	Yes
Viral confidence	Confident

Host assignment details
Assignment method	CRISPR
CRISPR-predicted host lineage	Bacteria → Firmicutes_A → Clostridia → Oscillospirales	Total connections	9	Host agreement	100
PHIST-predicted host lineage		Total connections		Host agreement

Representative genome content

Select to view: Genome Viewer Functional Annotation

Genome view (completeness: 88.74)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
structural_annotation	UHGV-0019063_1	PF01381,MF_00535,NF041951,COG1476	N/A	N/A	N/A	N/A
KOfam	UHGV-0019063_2	K14059	212.0	0	int; integrase	N/A
PHROG	UHGV-0019063_2	phrog_1	185.7	0	integrase	integration and excision
UniRef90	UHGV-0019063_2	UniRef90_A0A328U998	209.0	0	Site-specific integrase	N/A
eggNOG-mapper	UHGV-0019063_2	1226322.HMPREF1545_00144	186.0	0	Belongs to the 'phage' integrase family	N/A
Pfam	UHGV-0019063_2	PF14659	N/A	N/A	Phage integrase, N-terminal SAM-like domain	Phage_int_SAM_3
Pfam	UHGV-0019063_2	PF00589	N/A	N/A	Phage integrase family	Phage_integrase
COG	UHGV-0019063_2	COG0582	N/A	N/A	Integrase/recombinase, includes phage integrase	N/A
structural_annotation	UHGV-0019063_2	PF00589,PF12167,MF_02055,NF040815,COG4974	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0019063_3	PF02255,TIGR00823,COG1447	N/A	N/A	N/A	N/A
UniRef90	UHGV-0019063_6	UniRef90_A0A843IZ65	70.9	0.0000000000000117	Sigma70_r4 domain-containing protein	N/A
structural_annotation	UHGV-0019063_6	PF04545,MF_00245,NF001074,COG2739	N/A	N/A	N/A	N/A
PHROG	UHGV-0019063_7	phrog_6918	58.8	7.8e-17	holin	lysis
UniRef90	UHGV-0019063_7	UniRef90_G9YP36	57.4	0.0000000268	Phage holin, LL-H family	N/A
eggNOG-mapper	UHGV-0019063_7	1203606.HMPREF1526_01929	54.3	0.0000000599	Bacteriophage holin of superfamily 6 (Holin_LLH)	N/A
Pfam	UHGV-0019063_7	PF09682	N/A	N/A	Bacteriophage holin of superfamily 6 (Holin_LLH)	Phage_holin_6_1
structural_annotation	UHGV-0019063_7	PF09682,TIGR01673	N/A	N/A	N/A	N/A
KOfam	UHGV-0019063_8	K07273	159.7	0	acm; lysozyme	N/A
PHROG	UHGV-0019063_8	phrog_291	126.7	2.3e-37	endolysin	lysis
UniRef90	UHGV-0019063_8	UniRef90_A0A1C5WYX1	89.4	5.35e-18	Autolytic lysozyme	N/A
eggNOG-mapper	UHGV-0019063_8	877420.ATVW01000046_gene2306	91.7	1.3e-18	Glycosyl hydrolases family 25	N/A
Pfam	UHGV-0019063_8	PF01183	N/A	N/A	Glycosyl hydrolases family 25	Glyco_hydro_25
COG	UHGV-0019063_8	COG3757	N/A	N/A	Lyzozyme M1 (1,4-beta-N-acetylmuramidase), GH25 family	N/A
structural_annotation	UHGV-0019063_8	PF01183,MF_02227,TIGR04303,COG3757	N/A	N/A	N/A	N/A
PHROG	UHGV-0019063_10	phrog_35892	46.6	0.00000000000015	N/A	unknown function
UniRef90	UHGV-0019063_10	UniRef90_A0A7V6NI98	164.0	0	PKD domain-containing protein (Fragment)	N/A
eggNOG-mapper	UHGV-0019063_10	471875.RUMLAC_02240	140.0	6.72e-35	dockerin type I repeat-containing domain protein	N/A
Pfam	UHGV-0019063_10	PF13306	N/A	N/A	BspA type Leucine rich repeat region (6 copies)	LRR_5
COG	UHGV-0019063_10	COG5492	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0019063_13	PF10651,NF033814,COG2372	N/A	N/A	N/A	N/A
PHROG	UHGV-0019063_14	phrog_4105	74.0	1.8e-21	N/A	unknown function
eggNOG-mapper	UHGV-0019063_14	397288.C806_00056	87.0	9.53e-21	N/A	N/A
PHROG	UHGV-0019063_15	phrog_18593	129.0	2.8e-38	N/A	unknown function
UniRef90	UHGV-0019063_15	UniRef90_A0A2Y9CAD1	170.0	0	Carbohydrate binding domain-containing protein	N/A
eggNOG-mapper	UHGV-0019063_15	411460.RUMTOR_02099	143.0	1.4e-40	N/A	N/A
Pfam	UHGV-0019063_15	PF02839	N/A	N/A	Carbohydrate-binding module family 5/12	CBM_5_12
PHROG	UHGV-0019063_18	phrog_18725	73.5	2.9e-21	N/A	unknown function
eggNOG-mapper	UHGV-0019063_18	1226322.HMPREF1545_00062	67.0	0.00000000000843	N/A	N/A
PHROG	UHGV-0019063_19	phrog_13879	204.7	0	N/A	unknown function
eggNOG-mapper	UHGV-0019063_19	411902.CLOBOL_00124	321.0	0	N/A	N/A
structural_annotation	UHGV-0019063_19	PF14594,PF03256,NF033848,COG4379,COG5156	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0019063_20	693746.OBV_18200	103.0	1.38e-26	N/A	N/A
structural_annotation	UHGV-0019063_20	PF20458,TIGR01633,COG3499	N/A	N/A	N/A	N/A
PHROG	UHGV-0019063_21	phrog_1535	119.5	0	tail length tape measure protein	tail
UniRef90	UHGV-0019063_21	UniRef90_A0A2N0UYY1	313.0	0	Phage-related protein	N/A
eggNOG-mapper	UHGV-0019063_21	1160721.RBI_II00528	348.0	0	Phage tail tape measure protein, TP901 family	N/A
COG	UHGV-0019063_21	COG1006	N/A	N/A	Multisubunit Na+/H+ antiporter, MnhC subunit	N/A
PHROG	UHGV-0019063_22	phrog_706	127.2	1.1e-37	N/A	unknown function
UniRef90	UHGV-0019063_22	UniRef90_UPI001B3C82AE	177.0	0	Gp15 family bacteriophage protein	N/A
eggNOG-mapper	UHGV-0019063_22	1449050.JNLE01000003_gene3882	174.0	0	Bacteriophage Gp15 protein	N/A
Pfam	UHGV-0019063_22	PF06854	N/A	N/A	Bacteriophage Gp15 protein	Phage_Gp15
structural_annotation	UHGV-0019063_22	PF06854	N/A	N/A	N/A	N/A
PHROG	UHGV-0019063_23	phrog_11299	114.7	6.3e-34	N/A	unknown function
eggNOG-mapper	UHGV-0019063_23	1449050.JNLE01000003_gene3883	92.4	4.34e-22	N/A	N/A
structural_annotation	UHGV-0019063_23	PF10666	N/A	N/A	N/A	N/A
PHROG	UHGV-0019063_24	phrog_3099	153.5	1.4013e-45	N/A	unknown function
eggNOG-mapper	UHGV-0019063_24	1304866.K413DRAFT_3043	204.0	0	N/A	N/A
structural_annotation	UHGV-0019063_24	PF06199,TIGR02126,COG5437	N/A	N/A	N/A	N/A
PHROG	UHGV-0019063_25	phrog_3266	105.9	2.7e-31	tail completion	connector
eggNOG-mapper	UHGV-0019063_25	1449050.JNLE01000003_gene3885	129.0	1.59e-36	N/A	N/A
structural_annotation	UHGV-0019063_25	PF20765	N/A	N/A	N/A	N/A
PHROG	UHGV-0019063_26	phrog_556	114.1	6.1e-34	minor head protein	head and packaging
UniRef90	UHGV-0019063_26	UniRef90_UPI001B3C5A2B	167.0	0	minor capsid protein	N/A
eggNOG-mapper	UHGV-0019063_26	1449050.JNLE01000003_gene3886	129.0	2.69e-36	N/A	N/A
Pfam	UHGV-0019063_26	PF11114	N/A	N/A	Minor capsid protein	Minor_capsid_2
structural_annotation	UHGV-0019063_26	PF11114	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0019063_27	1449050.JNLE01000003_gene3887	69.3	0.00000000000013	N/A	N/A
Pfam	UHGV-0019063_27	PF20536	N/A	N/A	N/A	DUF6751
structural_annotation	UHGV-0019063_27	PF20536,TIGR01563	N/A	N/A	N/A	N/A
PHROG	UHGV-0019063_28	phrog_541	45.1	0.0000000000015	head-tail adaptor	connector
UniRef90	UHGV-0019063_28	UniRef90_A0A371AQT0	87.0	7.92e-20	N/A	N/A
eggNOG-mapper	UHGV-0019063_28	411902.CLOBOL_00133	70.5	0.0000000000000436	N/A	N/A
PHROG	UHGV-0019063_29	phrog_422	239.2	0	major head protein	head and packaging
UniRef90	UHGV-0019063_29	UniRef90_W0U896	361.0	0	Phage major capsid protein	N/A
eggNOG-mapper	UHGV-0019063_29	693746.OBV_18090	392.0	0	N/A	N/A
structural_annotation	UHGV-0019063_29	PF21703,MF_04119,TIGR04387,COG4834	N/A	N/A	N/A	N/A
PHROG	UHGV-0019063_30	phrog_194	100.3	2.3e-29	head scaffolding protein	head and packaging
UniRef90	UHGV-0019063_30	UniRef90_A0A2N0ULW9	197.0	0	Phage minor structural protein GP20	N/A
eggNOG-mapper	UHGV-0019063_30	411461.DORFOR_01166	113.0	5.41e-29	COG NOG36366 non supervised orthologous group	N/A
Pfam	UHGV-0019063_30	PF06810	N/A	N/A	Phage minor structural protein GP20	Phage_GP20
structural_annotation	UHGV-0019063_30	PF06810	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0019063_31	PF21279,NF040942	N/A	N/A	N/A	N/A
PHROG	UHGV-0019063_33	phrog_1865	55.0	0.0000000000000011	N/A	unknown function
KOfam	UHGV-0019063_35	K11044	68.4	5.5e-20	spyA; C3 family ADP-ribosyltransferase [EC:2.4.2.-]	N/A
PHROG	UHGV-0019063_35	phrog_581	277.6	0	minor head protein	head and packaging
UniRef90	UHGV-0019063_35	UniRef90_A0A2N0ULU5	386.0	0	Putative ADP-ribosyltransferase Certhrax	N/A
eggNOG-mapper	UHGV-0019063_35	428127.EUBDOL_01227	302.0	0	Phage minor capsid protein 2	N/A
Pfam	UHGV-0019063_35	PF06152	N/A	N/A	Phage minor capsid protein 2	Phage_min_cap2
Pfam	UHGV-0019063_35	PF03496	N/A	N/A	ADP-ribosyltransferase exoenzyme	ADPrib_exo_Tox
COG	UHGV-0019063_35	COG2369	N/A	N/A	N/A	N/A
PHROG	UHGV-0019063_36	phrog_533	300.9	0	portal protein	head and packaging
UniRef90	UHGV-0019063_36	UniRef90_UPI00189C53D6	464.0	0	phage capsid protein	N/A
eggNOG-mapper	UHGV-0019063_36	1304866.K413DRAFT_3035	403.0	0	N/A	N/A
structural_annotation	UHGV-0019063_36	PF05133,MF_04120,TIGR01542,COG5511	N/A	N/A	N/A	N/A
KOfam	UHGV-0019063_37	K06909	89.7	3.6e-26	xtmB; phage terminase large subunit	N/A
PHROG	UHGV-0019063_37	phrog_2	100.5	2.9e-29	terminase large subunit	head and packaging
UniRef90	UHGV-0019063_37	UniRef90_UPI00189AB5B3	644.0	0	terminase family protein	N/A
eggNOG-mapper	UHGV-0019063_37	1304866.K413DRAFT_3034	555.0	0	Phage terminase, large subunit, PBSX family	N/A
Pfam	UHGV-0019063_37	PF03237	N/A	N/A	Terminase large subunit, T4likevirus-type, N-terminal	Terminase_6N
COG	UHGV-0019063_37	COG1783	N/A	N/A	Phage terminase large subunit	N/A
structural_annotation	UHGV-0019063_37	PF04466,PF20441,MF_04145,TIGR01547,COG1783	N/A	N/A	N/A	N/A
KOfam	UHGV-0019063_38	K07474	140.3	1.99993e-41	xtmA; phage terminase small subunit	N/A
PHROG	UHGV-0019063_38	phrog_51	124.4	3.5e-37	terminase small subunit	head and packaging
UniRef90	UHGV-0019063_38	UniRef90_UPI000A267627	119.0	1.77e-31	terminase small subunit	N/A
eggNOG-mapper	UHGV-0019063_38	1095750.HMPREF9970_1030	111.0	2.6e-29	Terminase small subunit	N/A
Pfam	UHGV-0019063_38	PF03592	N/A	N/A	Terminase small subunit	Terminase_2
COG	UHGV-0019063_38	COG3728	N/A	N/A	Phage terminase, small subunit	N/A
structural_annotation	UHGV-0019063_38	PF03592,COG3728	N/A	N/A	N/A	N/A
PHROG	UHGV-0019063_40	phrog_36	62.8	7.1e-18	transcriptional regulator	transcription regulation
UniRef90	UHGV-0019063_40	UniRef90_UPI001D05F87A	96.7	3.58e-23	RNA polymerase subunit sigma-24	N/A
eggNOG-mapper	UHGV-0019063_40	1235835.C814_01174	87.8	1.68e-20	N/A	N/A
structural_annotation	UHGV-0019063_40	PF07374	N/A	N/A	N/A	N/A
PHROG	UHGV-0019063_44	phrog_1374	56.4	3.9e-16	N/A	unknown function
UniRef90	UHGV-0019063_44	UniRef90_A0A8F5MGK2	59.3	0.000000000234	Membrane protein	N/A
eggNOG-mapper	UHGV-0019063_44	1203606.HMPREF1526_01891	56.2	0.00000000251	N/A	N/A
structural_annotation	UHGV-0019063_49	COG3460	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0019063_50	PF11998,COG5420	N/A	N/A	N/A	N/A
Pfam	UHGV-0019063_52	PF18912	N/A	N/A	Double zinc ribbon domain	DZR_2
KOfam	UHGV-0019063_54	K06919	112.6	3.6e-33	K06919; putative DNA primase/helicase	N/A
PHROG	UHGV-0019063_54	phrog_1829	814.2	0	DNA primase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0019063_54	UniRef90_A0A356CZ91	881.0	0	DNA primase	N/A
eggNOG-mapper	UHGV-0019063_54	1410670.JHXF01000015_gene2274	736.0	0	Phage plasmid primase, P4 family	N/A
Pfam	UHGV-0019063_54	PF08706	N/A	N/A	D5 N terminal like	D5_N
Pfam	UHGV-0019063_54	PF19263	N/A	N/A	N/A	DUF5906
Pfam	UHGV-0019063_54	PF03288	N/A	N/A	Poxvirus D5 protein-like	Pox_D5
NCBIFam	UHGV-0019063_54	TIGR01613.1	N/A	N/A	phage/plasmid primase, P4 family	N/A
COG	UHGV-0019063_54	COG3378	N/A	N/A	DNA primase, phage- or plasmid-associated	N/A
structural_annotation	UHGV-0019063_54	PF08706,PF05272,PF02257,MF_04000,NF011296,COG3378,COG4983	N/A	N/A	N/A	N/A
PHROG	UHGV-0019063_55	phrog_378	81.7	1.2e-23	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0019063_55	UniRef90_UPI0019172865	96.3	1.22e-21	N/A	N/A
eggNOG-mapper	UHGV-0019063_55	1410670.JHXF01000015_gene2272	98.2	3.8e-23	N/A	N/A
Pfam	UHGV-0019063_55	PF05037	N/A	N/A	N/A	DUF669
structural_annotation	UHGV-0019063_55	PF05037,NF004948	N/A	N/A	N/A	N/A
PHROG	UHGV-0019063_56	phrog_5702	81.3	5.9e-24	Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0019063_56	UniRef90_A0A2T4MRW5	120.0	2.98e-33	VRR-NUC domain-containing protein	N/A
eggNOG-mapper	UHGV-0019063_56	985762.SAGN_11317	120.0	4.99e-34	VRR-NUC domain	N/A
Pfam	UHGV-0019063_56	PF08774	N/A	N/A	VRR-NUC domain	VRR_NUC
structural_annotation	UHGV-0019063_56	PF03838,MF_00130,NF002585,COG3331	N/A	N/A	N/A	N/A
KOfam	UHGV-0019063_57	K19789	325.3	0	radD; DNA repair protein RadD	N/A
PHROG	UHGV-0019063_57	phrog_16	287.0	0	DNA helicase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0019063_57	UniRef90_A0A374N1T8	602.0	0	Helicase	N/A
eggNOG-mapper	UHGV-0019063_57	1410670.JHXF01000015_gene2270	559.0	0	helicase	N/A
PADLOC	UHGV-0019063_57	mREase_IV_00005	122.7	6.5e-37	Type IV methyl-directed restriction enzyme	RM
Pfam	UHGV-0019063_57	PF04851	N/A	N/A	Type III restriction enzyme, res subunit	ResIII
Pfam	UHGV-0019063_57	PF00271	N/A	N/A	Helicase conserved C-terminal domain	Helicase_C
COG	UHGV-0019063_57	COG1061	N/A	N/A	Superfamily II DNA or RNA helicase	N/A
structural_annotation	UHGV-0019063_57	PF04851,PF00271,MF_01489,TIGR04095,COG1061	N/A	N/A	N/A	N/A
PHROG	UHGV-0019063_58	phrog_2872	240.8	0	Sak4-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0019063_58	UniRef90_UPI001A9B3ECC	307.0	0	AAA family ATPase	N/A
eggNOG-mapper	UHGV-0019063_58	754027.HMPREF9554_00709	202.0	0	N/A	N/A
Pfam	UHGV-0019063_58	PF13479	N/A	N/A	AAA domain	AAA_24
structural_annotation	UHGV-0019063_58	PF13479,MF_00350,TIGR01618,COG0468	N/A	N/A	N/A	N/A
PHROG	UHGV-0019063_59	phrog_253	71.8	1.1e-20	Mu Gam-like end protection	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0019063_59	UniRef90_UPI000F79AD42	55.5	0.000000265	siphovirus Gp157 family protein	N/A
eggNOG-mapper	UHGV-0019063_59	1008459.TASI_0420	61.6	0.000000000189	Siphovirus Gp157	N/A
Pfam	UHGV-0019063_59	PF05565	N/A	N/A	Siphovirus Gp157	Sipho_Gp157

All viral genomes

ID	Representative?	Length (bps)	% GC Content	CheckV Completeness	geNomad Score
UHGV-0019063	Yes	35,535	56	89	1