vOTU vOTU-102036

vOTU: vOTU-102036

Overview

Genome (FASTA) Annotation Track (GFF) Proteins (FASTA) Protein Annotation (TSV)

Cluster properties
vOTU ID	vOTU-102036
Number of genomes	1
Taxonomy (ICTV)	Bacteria → Firmicutes_A → Clostridia → Clostridiales → Clostridiaceae → Clostridium → Clostridium sp900540255
Taxonomy (UHGV)	vFAM-00006 → vSUBFAM-01244 → vGENUS-05543 → vOTU-102036
Host lineage	Bacteria → Firmicutes_A → Clostridia → Clostridiales → Clostridiaceae → Clostridium → Clostridium sp900540255
Host range breadth	Species
Lifestyle	temperate (Evidence: BACPHLIP)

Representative genome
Genome ID	UHGV-1405536
Biosample ID	SAMEA2737711
Genome length (bp)	24,954 bps
CheckV completeness	64.15% (Medium-quality)
CDS count	30
CDS density	94.61%
tRNA count	0
Integrase	No
Viral confidence	Confident

Host assignment details
Assignment method	PHIST
CRISPR-predicted host lineage	Bacteria → Firmicutes_A → Clostridia → Clostridiales → Clostridiaceae → Clostridium → Clostridium sp001916075	Total connections	10	Host agreement	80
PHIST-predicted host lineage	Bacteria → Firmicutes_A → Clostridia → Clostridiales → Clostridiaceae → Clostridium → Clostridium sp900540255	Total connections	36	Host agreement	75

Representative genome content

Select to view: Genome Viewer Functional Annotation

Genome view (completeness: 64.15)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
UniRef90	UHGV-1405536_2	UniRef90_A0A1W2AQP2	122.0	9.75e-30	SEC-C motif-containing protein	N/A
eggNOG-mapper	UHGV-1405536_2	86416.Clopa_0823	108.0	2.19e-25	SEC-C motif	N/A
Pfam	UHGV-1405536_2	PF02810	N/A	N/A	SEC-C motif	SEC-C
KOfam	UHGV-1405536_3	K10804	45.4	0.0000000000011	tesA; acyl-CoA thioesterase I [EC:3.1.2.- 3.1.2.2 3.1.1.2 3.1.1.5]	N/A
PHROG	UHGV-1405536_3	phrog_21231	54.3	9.9e-16	virion structural protein	head and packaging
eggNOG-mapper	UHGV-1405536_3	1499683.CCFF01000005_gene81	166.0	3.33999e-41	N/A	N/A
Pfam	UHGV-1405536_3	PF10651	N/A	N/A	BppU N-terminal domain	BppU_N
Pfam	UHGV-1405536_3	PF13472	N/A	N/A	GDSL-like Lipase/Acylhydrolase family	Lipase_GDSL_2
COG	UHGV-1405536_3	COG2755	N/A	N/A	Lysophospholipase L1 or related esterase. Includes spore coat protein LipC/YcsK	N/A
PHROG	UHGV-1405536_4	phrog_1067	269.6	0	minor head protein	head and packaging
UniRef90	UHGV-1405536_4	UniRef90_UPI00164A835E	815.0	0	phage tail protein	N/A
eggNOG-mapper	UHGV-1405536_4	1292035.H476_1004	375.0	0	Prophage endopeptidase tail	N/A
Pfam	UHGV-1405536_4	PF06605	N/A	N/A	Prophage endopeptidase tail	Prophage_tail
NCBIFam	UHGV-1405536_4	TIGR01665.1	N/A	N/A	phage tail spike protein	N/A
COG	UHGV-1405536_4	COG4926	N/A	N/A	Phage-related protein	N/A
structural_annotation	UHGV-1405536_4	PF14594,TIGR01665,COG4926	N/A	N/A	N/A	N/A
PHROG	UHGV-1405536_5	phrog_33	58.5	1.6e-16	distal tail protein Dit	tail
UniRef90	UHGV-1405536_5	UniRef90_UPI001625AB57	180.0	0	phage tail family protein	N/A
eggNOG-mapper	UHGV-1405536_5	1280689.AUJC01000011_gene1531	168.0	0	phage tail	N/A
Pfam	UHGV-1405536_5	PF05709	N/A	N/A	Phage tail protein RIFT-related domain	Sipho_tail
NCBIFam	UHGV-1405536_5	TIGR01633.1	N/A	N/A	distal tail protein Dit	N/A
COG	UHGV-1405536_5	COG4722	N/A	N/A	Phage-related protein YomH	N/A
structural_annotation	UHGV-1405536_5	PF20195,TIGR01633,COG4722	N/A	N/A	N/A	N/A
KOfam	UHGV-1405536_6	K10421	66.9	9.2e-21	CLIP1, RSN; CAP-Gly domain-containing linker protein 1	N/A
PHROG	UHGV-1405536_6	phrog_1533	438.8	0	tail length tape measure protein	tail
UniRef90	UHGV-1405536_6	UniRef90_UPI00164B849B	723.0	0	phage tail tape measure protein	N/A
eggNOG-mapper	UHGV-1405536_6	1151292.QEW_0351	405.0	0	Phage-related minor tail protein	N/A
Pfam	UHGV-1405536_6	PF10145	N/A	N/A	Phage-related minor tail protein	PhageMin_Tail
NCBIFam	UHGV-1405536_6	TIGR01760.1	N/A	N/A	phage tail tape measure protein	N/A
COG	UHGV-1405536_6	COG5283	N/A	N/A	Phage-related tail protein	N/A
structural_annotation	UHGV-1405536_6	PF10145,TIGR01760,COG5280	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-1405536_7	1476973.JMMB01000007_gene1770	68.6	0.00000000000545	N/A	N/A
PHROG	UHGV-1405536_8	phrog_88	125.4	3.4e-37	major tail protein	tail
UniRef90	UHGV-1405536_8	UniRef90_B1V2P3	221.0	0	Phage major tail protein, Phi13 family	N/A
eggNOG-mapper	UHGV-1405536_8	1151292.QEW_0347	115.0	1.84e-29	Phage tail tube protein	N/A
NCBIFam	UHGV-1405536_8	TIGR01603.1	N/A	N/A	major tail protein	N/A
structural_annotation	UHGV-1405536_8	PF06488,TIGR01603,COG3498	N/A	N/A	N/A	N/A
PHROG	UHGV-1405536_9	phrog_78	43.4	0.0000000000057	tail terminator	connector
structural_annotation	UHGV-1405536_9	PF05657,NF040576,COG3167	N/A	N/A	N/A	N/A
PHROG	UHGV-1405536_10	phrog_5	59.6	8e-17	tail completion or Neck1 protein	connector
UniRef90	UHGV-1405536_10	UniRef90_UPI00164C9F08	137.0	3.23e-39	HK97 gp10 family phage protein	N/A
eggNOG-mapper	UHGV-1405536_10	1499684.CCNP01000020_gene2283	69.3	0.000000000000215	Bacteriophage HK97-gp10, putative tail-component	N/A
Pfam	UHGV-1405536_10	PF04883	N/A	N/A	Bacteriophage HK97-gp10, putative tail-component	HK97-gp10_like
NCBIFam	UHGV-1405536_10	TIGR01725.1	N/A	N/A	HK97-gp10 family putative phage morphogenesis protein	N/A
structural_annotation	UHGV-1405536_10	PF04883,TIGR01725	N/A	N/A	N/A	N/A
PHROG	UHGV-1405536_11	phrog_11176	199.3	0	head-tail adaptor	connector
UniRef90	UHGV-1405536_11	UniRef90_UPI00164ACD7E	298.0	0	phage head closure protein	N/A
eggNOG-mapper	UHGV-1405536_11	1347392.CCEZ01000045_gene13	72.8	0.0000000000000743	N/A	N/A
Pfam	UHGV-1405536_11	PF05521	N/A	N/A	Phage head-tail joining protein	Phage_H_T_join
NCBIFam	UHGV-1405536_11	TIGR01563.1	N/A	N/A	phage head closure protein	N/A
structural_annotation	UHGV-1405536_11	PF05521,PF07405,TIGR01563,COG5614	N/A	N/A	N/A	N/A
PHROG	UHGV-1405536_12	phrog_749	60.3	2.9e-17	N/A	unknown function
UniRef90	UHGV-1405536_12	UniRef90_A0A1I3QJG6	108.0	5.93e-29	Phage gp6-like head-tail connector protein	N/A
eggNOG-mapper	UHGV-1405536_12	349161.Dred_2603	62.0	0.0000000000357	N/A	N/A
PHROG	UHGV-1405536_13	phrog_10	100.3	2.2e-29	major head protein	head and packaging
UniRef90	UHGV-1405536_13	UniRef90_UPI00164AB0C3	650.0	0	phage major capsid protein	N/A
eggNOG-mapper	UHGV-1405536_13	1211817.CCAT010000053_gene2132	340.0	0	Phage capsid family	N/A
Pfam	UHGV-1405536_13	PF05065	N/A	N/A	Phage capsid family	Phage_capsid
NCBIFam	UHGV-1405536_13	TIGR01554.2	N/A	N/A	phage major capsid protein	N/A
COG	UHGV-1405536_13	COG4653	N/A	N/A	Predicted phage phi-C31 gp36 major capsid-like protein	N/A
structural_annotation	UHGV-1405536_13	PF05065,MF_04119,TIGR01554,COG4653	N/A	N/A	N/A	N/A
KOfam	UHGV-1405536_14	K01358	122.4	4.5e-36	clpP, CLPP; ATP-dependent Clp protease, protease subunit [EC:3.4.21.92]	N/A
PHROG	UHGV-1405536_14	phrog_94	211.1	0	head maturation protease	head and packaging
UniRef90	UHGV-1405536_14	UniRef90_A0A316S6S6	348.0	0	ATP-dependent Clp protease proteolytic subunit	N/A
eggNOG-mapper	UHGV-1405536_14	1235792.C808_00085	239.0	0	Clp protease	N/A
Pfam	UHGV-1405536_14	PF00574	N/A	N/A	Clp protease	CLP_protease
COG	UHGV-1405536_14	COG0740	N/A	N/A	ATP-dependent protease ClpP, protease subunit	N/A
structural_annotation	UHGV-1405536_14	PF00574,MF_00444,NF009203,COG0740	N/A	N/A	N/A	N/A
PHROG	UHGV-1405536_15	phrog_12	96.2	2.4e-28	portal protein	head and packaging
UniRef90	UHGV-1405536_15	UniRef90_UPI00164CC1C1	524.0	0	phage portal protein	N/A
eggNOG-mapper	UHGV-1405536_15	349161.Dred_2606	243.0	0	Phage portal protein, HK97 family	N/A
Pfam	UHGV-1405536_15	PF04860	N/A	N/A	Phage portal protein	Phage_portal
NCBIFam	UHGV-1405536_15	TIGR01537.1	N/A	N/A	phage portal protein	N/A
COG	UHGV-1405536_15	COG4695	N/A	N/A	Phage portal protein BeeE	N/A
structural_annotation	UHGV-1405536_15	PF04860,MF_04135,TIGR01537,COG4695	N/A	N/A	N/A	N/A
PHROG	UHGV-1405536_16	phrog_9	278.2	0	terminase large subunit	head and packaging
UniRef90	UHGV-1405536_16	UniRef90_UPI00164CCF79	1045.0	0	terminase large subunit	N/A
eggNOG-mapper	UHGV-1405536_16	1235798.C817_02581	551.0	0	Phage terminase-like protein large subunit	N/A
Pfam	UHGV-1405536_16	PF03354	N/A	N/A	Terminase large subunit, ATPase domain	TerL_ATPase
Pfam	UHGV-1405536_16	PF20441	N/A	N/A	Terminase large subunit, endonuclease domain	TerL_nuclease
COG	UHGV-1405536_16	COG4626	N/A	N/A	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	N/A
structural_annotation	UHGV-1405536_16	PF20441,PF03354,MF_04146,TIGR01547,COG4626	N/A	N/A	N/A	N/A
PHROG	UHGV-1405536_17	phrog_5110	86.6	2e-25	terminase small subunit	head and packaging
UniRef90	UHGV-1405536_17	UniRef90_UPI00164B2843	319.0	0	RNA polymerase subunit sigma-70	N/A
eggNOG-mapper	UHGV-1405536_17	1405.DJ92_861	130.0	1.04e-35	N/A	N/A
Pfam	UHGV-1405536_17	PF13518	N/A	N/A	Helix-turn-helix domain	HTH_28
Pfam	UHGV-1405536_17	PF05119	N/A	N/A	Phage terminase, small subunit	Terminase_4
COG	UHGV-1405536_17	COG5484	N/A	N/A	N/A	N/A
structural_annotation	UHGV-1405536_17	PF05119,TIGR01558,COG3747	N/A	N/A	N/A	N/A
PHROG	UHGV-1405536_18	phrog_119	55.1	0.000000000000001	HNH endonuclease	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1405536_18	UniRef90_UPI00164ABAC9	207.0	0	HNH endonuclease	N/A
eggNOG-mapper	UHGV-1405536_18	768710.DesyoDRAFT_1275	110.0	1.01e-29	HNH nucleases	N/A
Pfam	UHGV-1405536_18	PF01844	N/A	N/A	HNH endonuclease	HNH
COG	UHGV-1405536_18	COG1403	N/A	N/A	5-methylcytosine-specific restriction endonuclease McrA	N/A
PHROG	UHGV-1405536_19	phrog_1315	55.9	4.4e-16	N/A	unknown function
PHROG	UHGV-1405536_20	phrog_36	46.4	0.00000000000053	transcriptional regulator	transcription regulation
UniRef90	UHGV-1405536_20	UniRef90_A0A1G9I4W9	102.0	4.85e-24	Sigma-70, region 4	N/A
eggNOG-mapper	UHGV-1405536_20	1415774.U728_493	190.0	0	DNA-templated transcription, initiation	N/A
COG	UHGV-1405536_20	COG1595	N/A	N/A	DNA-directed RNA polymerase specialized sigma subunit, sigma24 family	N/A
structural_annotation	UHGV-1405536_20	PF06530,TIGR01636	N/A	N/A	N/A	N/A
PHROG	UHGV-1405536_21	phrog_25509	139.0	9.00054e-42	N/A	unknown function
eggNOG-mapper	UHGV-1405536_21	1414720.CBYM010000002_gene580	137.0	5.02996e-41	N/A	N/A
KOfam	UHGV-1405536_22	K02342	85.1	7.3e-25	dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7]	N/A
PHROG	UHGV-1405536_22	phrog_192	110.0	2.2e-32	DNA polymerase exonuclease subunit	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1405536_22	UniRef90_R6FSJ4	328.0	0	Exonuclease RNase T and DNA polymerase III	N/A
eggNOG-mapper	UHGV-1405536_22	641107.CDLVIII_1931	64.7	0.00000000151	Required for replicative DNA synthesis. This DNA polymerase also exhibits 3' to 5' exonuclease activity	N/A
PADLOC	UHGV-1405536_22	cd06127	73.1	9.4e-21	CAS-I,CAS-II,CAS-III,CAS-IV,CAS-V,CAS-VI; associated	CRISPR-CAS
Pfam	UHGV-1405536_22	PF00929	N/A	N/A	Exonuclease	RNase_T
COG	UHGV-1405536_22	COG2176	N/A	N/A	DNA polymerase III, alpha subunit (gram-positive type)	N/A
structural_annotation	UHGV-1405536_22	PF00929,MF_00157,NF006316,COG0847	N/A	N/A	N/A	N/A
UniRef90	UHGV-1405536_23	UniRef90_UPI0016255B8A	52.4	0.00000014	BC1881 family protein	N/A
structural_annotation	UHGV-1405536_23	NF033495	N/A	N/A	N/A	N/A
KOfam	UHGV-1405536_25	K03497	63.3	3e-18	parB, spo0J; ParB family transcriptional regulator, chromosome partitioning protein	N/A
PHROG	UHGV-1405536_25	phrog_4715	231.2	0	ParB-like partition protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1405536_25	UniRef90_R6LLI0	592.0	0	ParB protein	N/A
eggNOG-mapper	UHGV-1405536_25	1211817.CCAT010000008_gene925	243.0	0	Belongs to the ParB family	N/A
Pfam	UHGV-1405536_25	PF02195	N/A	N/A	ParB/Sulfiredoxin domain	ParBc
COG	UHGV-1405536_25	COG1475	N/A	N/A	Chromosome segregation protein Spo0J, contains ParB-like nuclease domain	N/A
structural_annotation	UHGV-1405536_25	PF02195,MF_02015,TIGR04285,COG1475	N/A	N/A	N/A	N/A
PHROG	UHGV-1405536_26	phrog_424	101.3	9.8e-30	phosphoadenosine phosphosulfate reductase	moron, auxiliary metabolic gene and host takeover
eggNOG-mapper	UHGV-1405536_26	536233.CLO_1554	426.0	0	sulfate reduction	N/A
PADLOC	UHGV-1405536_26	SspD_00001	44.0	0.0000000000061	SspD	SSP
COG	UHGV-1405536_26	COG0175	N/A	N/A	3'-phosphoadenosine 5'-phosphosulfate sulfotransferase (PAPS reductase)/FAD synthetase or related enzyme	N/A
structural_annotation	UHGV-1405536_26	PF01507,MF_00063,NF006327,COG0175	N/A	N/A	N/A	N/A
KOfam	UHGV-1405536_27	K03496	189.1	0	parA, soj; chromosome partitioning protein	N/A
PHROG	UHGV-1405536_27	phrog_164	154.8	0	ParA-like partition protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1405536_27	UniRef90_R6KWQ8	479.0	0	Soj protein	N/A
eggNOG-mapper	UHGV-1405536_27	1235792.C808_00611	313.0	0	AAA domain	N/A
Pfam	UHGV-1405536_27	PF13614	N/A	N/A	AAA domain	AAA_31
COG	UHGV-1405536_27	COG1192	N/A	N/A	ParA-like ATPase involved in chromosome/plasmid partitioning or cellulose biosynthesis protein BcsQ	N/A
structural_annotation	UHGV-1405536_27	PF13614,MF_00533,TIGR03453,COG1192	N/A	N/A	N/A	N/A
structural_annotation	UHGV-1405536_28	PF11148,MF_01553,COG5503	N/A	N/A	N/A	N/A
PHROG	UHGV-1405536_29	phrog_824	163.7	0	N/A	unknown function
UniRef90	UHGV-1405536_29	UniRef90_R6G481	276.0	0	VRR-NUC domain protein	N/A
eggNOG-mapper	UHGV-1405536_29	1414720.CBYM010000002_gene588	182.0	0	VRR-NUC domain	N/A
Pfam	UHGV-1405536_29	PF08774	N/A	N/A	VRR-NUC domain	VRR_NUC

All viral genomes

ID	Representative?	Length (bps)	% GC Content	CheckV Completeness	geNomad Score
UHGV-1405536	Yes	24,954	29	64	1