vOTU vOTU-102065

vOTU: vOTU-102065

Overview

Genome (FASTA) Annotation Track (GFF) Proteins (FASTA) Protein Annotation (TSV)

Cluster properties
vOTU ID	vOTU-102065
Number of genomes	1
Taxonomy (ICTV)	Bacteria → Firmicutes_A → Clostridia → Oscillospirales → Acutalibacteraceae → Ruminococcus_E → Ruminococcus_E bromii_B
Taxonomy (UHGV)	vFAM-00003 → vSUBFAM-01291 → vGENUS-14319 → vOTU-102065
Host lineage	Bacteria → Firmicutes_A → Clostridia → Oscillospirales → Acutalibacteraceae → Ruminococcus_E → Ruminococcus_E bromii_B
Host range breadth	Species
Lifestyle	temperate (Evidence: geNomad)

Representative genome
Genome ID	UHGV-1536880
Biosample ID	SAMEA3664552
Genome length (bp)	28,267 bps
CheckV completeness	67.34% (Medium-quality)
CDS count	37
CDS density	95.16%
tRNA count	0
Integrase	No
Viral confidence	Confident

Host assignment details
Assignment method	CRISPR
CRISPR-predicted host lineage	Bacteria → Firmicutes_A → Clostridia → Oscillospirales → Acutalibacteraceae → Ruminococcus_E → Ruminococcus_E bromii_B	Total connections	1492	Host agreement	84.79
PHIST-predicted host lineage	Bacteria → Firmicutes_A → Clostridia → Oscillospirales → Acutalibacteraceae → Ruminococcus_E → Ruminococcus_E bromii_B	Total connections	106	Host agreement	96.23

Representative genome content

Select to view: Genome Viewer Functional Annotation

Genome view (completeness: 67.34)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
UniRef90	UHGV-1536880_1	UniRef90_A0A374N9Y2	200.0	0	N/A	N/A
structural_annotation	UHGV-1536880_1	PF10651	N/A	N/A	N/A	N/A
PHROG	UHGV-1536880_2	phrog_1067	99.4	7.7e-30	minor head protein	head and packaging
UniRef90	UHGV-1536880_2	UniRef90_A0A348ZBV6	154.0	1.29e-39	Prophage_tail domain-containing protein	N/A
eggNOG-mapper	UHGV-1536880_2	1462527.CCDM010000003_gene3730	64.7	0.0000000279	gp58-like protein	N/A
Pfam	UHGV-1536880_2	PF06605	N/A	N/A	Prophage endopeptidase tail	Prophage_tail
NCBIFam	UHGV-1536880_2	TIGR01665.1	N/A	N/A	phage tail spike protein	N/A
COG	UHGV-1536880_2	COG1511	N/A	N/A	N/A	N/A
structural_annotation	UHGV-1536880_2	PF14594,TIGR01665,COG4926	N/A	N/A	N/A	N/A
PHROG	UHGV-1536880_3	phrog_33	83.1	5.5e-24	distal tail protein Dit	tail
UniRef90	UHGV-1536880_3	UniRef90_R6GVG8	91.3	2.04e-18	Phage putative tail component N-domain protein	N/A
eggNOG-mapper	UHGV-1536880_3	1160721.RBI_I01575	95.9	6.66e-21	Phage tail protein	N/A
COG	UHGV-1536880_3	COG4722	N/A	N/A	Phage-related protein YomH	N/A
structural_annotation	UHGV-1536880_3	PF20195,TIGR01633,COG4722	N/A	N/A	N/A	N/A
KOfam	UHGV-1536880_4	K20283	59.1	4.6e-18	GOLGA4; golgin subfamily A member 4	N/A
PHROG	UHGV-1536880_4	phrog_1272	265.3	0	tail length tape measure protein	tail
UniRef90	UHGV-1536880_4	UniRef90_A0A412ULX0	1647.0	0	PhageMin_Tail domain-containing protein	N/A
eggNOG-mapper	UHGV-1536880_4	588581.Cpap_1264	241.0	0	Tail tape measure protein, TP901 family	N/A
Pfam	UHGV-1536880_4	PF10145	N/A	N/A	Phage-related minor tail protein	PhageMin_Tail
COG	UHGV-1536880_4	COG5280	N/A	N/A	Phage-related minor tail protein	N/A
structural_annotation	UHGV-1536880_4	PF10145,TIGR01760,COG5280	N/A	N/A	N/A	N/A
structural_annotation	UHGV-1536880_6	PF11836	N/A	N/A	N/A	N/A
PHROG	UHGV-1536880_7	phrog_88	76.3	3.7e-22	major tail protein	tail
UniRef90	UHGV-1536880_7	UniRef90_A0A1G5CNS8	151.0	5.5071e-43	Phage major tail protein, phi13 family	N/A
eggNOG-mapper	UHGV-1536880_7	1321782.HMPREF1986_01362	65.1	0.000000000192	phage major tail protein, phi13 family	N/A
NCBIFam	UHGV-1536880_7	TIGR01603.1	N/A	N/A	major tail protein	N/A
structural_annotation	UHGV-1536880_7	PF06488,TIGR01603,COG3498	N/A	N/A	N/A	N/A
UniRef90	UHGV-1536880_8	UniRef90_UPI000E5564A4	273.0	0	HK97 gp10 family phage protein	N/A
Pfam	UHGV-1536880_8	PF04883	N/A	N/A	Bacteriophage HK97-gp10, putative tail-component	HK97-gp10_like
structural_annotation	UHGV-1536880_8	TIGR01725	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-1536880_9	272623.L59277	51.6	0.0000006	N/A	N/A
structural_annotation	UHGV-1536880_9	PF05657,TIGR04412	N/A	N/A	N/A	N/A
PHROG	UHGV-1536880_10	phrog_19734	71.0	1.4e-20	N/A	unknown function
eggNOG-mapper	UHGV-1536880_10	86416.Clopa_0343	60.5	0.000000000326	N/A	N/A
structural_annotation	UHGV-1536880_10	PF05521,TIGR01563,COG5614	N/A	N/A	N/A	N/A
PHROG	UHGV-1536880_11	phrog_749	56.0	6.3e-16	N/A	unknown function
UniRef90	UHGV-1536880_11	UniRef90_A0A1G5CMX8	103.0	7.08e-27	Phage gp6-like head-tail connector protein	N/A
eggNOG-mapper	UHGV-1536880_11	1211817.CCAT010000053_gene2133	58.5	0.000000000825	N/A	N/A
PHROG	UHGV-1536880_12	phrog_10	129.5	3.2e-38	major head protein	head and packaging
UniRef90	UHGV-1536880_12	UniRef90_A0A412ULW9	738.0	0	Phage major capsid protein	N/A
eggNOG-mapper	UHGV-1536880_12	1211817.CCAT010000053_gene2132	322.0	0	Phage capsid family	N/A
Pfam	UHGV-1536880_12	PF05065	N/A	N/A	Phage capsid family	Phage_capsid
NCBIFam	UHGV-1536880_12	TIGR01554.2	N/A	N/A	phage major capsid protein	N/A
COG	UHGV-1536880_12	COG4653	N/A	N/A	Predicted phage phi-C31 gp36 major capsid-like protein	N/A
structural_annotation	UHGV-1536880_12	PF05065,MF_04119,TIGR01554,COG4653	N/A	N/A	N/A	N/A
KOfam	UHGV-1536880_13	K01358	138.7	5.60001e-41	clpP, CLPP; ATP-dependent Clp protease, protease subunit [EC:3.4.21.92]	N/A
PHROG	UHGV-1536880_13	phrog_94	208.1	0	head maturation protease	head and packaging
UniRef90	UHGV-1536880_13	UniRef90_A0A412ULU1	469.0	0	ATP-dependent Clp protease proteolytic subunit	N/A
eggNOG-mapper	UHGV-1536880_13	86416.Clopa_0340	177.0	0	Belongs to the peptidase S14 family	N/A
Pfam	UHGV-1536880_13	PF00574	N/A	N/A	Clp protease	CLP_protease
COG	UHGV-1536880_13	COG0740	N/A	N/A	ATP-dependent protease ClpP, protease subunit	N/A
structural_annotation	UHGV-1536880_13	PF00574,MF_00444,NF011090,COG0740	N/A	N/A	N/A	N/A
PHROG	UHGV-1536880_14	phrog_12	97.4	1.2e-28	portal protein	head and packaging
UniRef90	UHGV-1536880_14	UniRef90_A0A412ULV9	745.0	0	Phage portal protein	N/A
eggNOG-mapper	UHGV-1536880_14	1415774.U728_1254	261.0	0	Phage portal protein	N/A
Pfam	UHGV-1536880_14	PF04860	N/A	N/A	Phage portal protein	Phage_portal
NCBIFam	UHGV-1536880_14	TIGR01537.1	N/A	N/A	phage portal protein	N/A
COG	UHGV-1536880_14	COG4695	N/A	N/A	Phage portal protein BeeE	N/A
structural_annotation	UHGV-1536880_14	PF04860,MF_04135,TIGR01537,COG4695	N/A	N/A	N/A	N/A
PHROG	UHGV-1536880_15	phrog_9	292.5	0	terminase large subunit	head and packaging
UniRef90	UHGV-1536880_15	UniRef90_A0A412UM03	1021.0	0	Terminase large subunit	N/A
eggNOG-mapper	UHGV-1536880_15	86416.Clopa_0337	634.0	0	Phage Terminase	N/A
Pfam	UHGV-1536880_15	PF03354	N/A	N/A	Terminase large subunit, ATPase domain	TerL_ATPase
Pfam	UHGV-1536880_15	PF20441	N/A	N/A	Terminase large subunit, endonuclease domain	TerL_nuclease
COG	UHGV-1536880_15	COG4626	N/A	N/A	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	N/A
structural_annotation	UHGV-1536880_15	PF20441,PF03354,MF_04146,TIGR01547,COG4626	N/A	N/A	N/A	N/A
PHROG	UHGV-1536880_16	phrog_5110	82.8	2.8e-24	terminase small subunit	head and packaging
UniRef90	UHGV-1536880_16	UniRef90_A0A1M5U1D5	112.0	3.42e-30	Phage terminase, small subunit	N/A
eggNOG-mapper	UHGV-1536880_16	1211817.CCAT010000053_gene2128	99.4	8.96e-26	N/A	N/A
Pfam	UHGV-1536880_16	PF05119	N/A	N/A	Phage terminase, small subunit	Terminase_4
structural_annotation	UHGV-1536880_16	PF05119,TIGR01558,COG3747	N/A	N/A	N/A	N/A
PHROG	UHGV-1536880_17	phrog_119	69.4	5e-20	HNH endonuclease	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1536880_17	UniRef90_A0A412ULY9	223.0	0	HNH endonuclease	N/A
eggNOG-mapper	UHGV-1536880_17	1158607.UAU_01026	102.0	7.19e-27	HNH endonuclease	N/A
Pfam	UHGV-1536880_17	PF01844	N/A	N/A	HNH endonuclease	HNH
COG	UHGV-1536880_17	COG1403	N/A	N/A	5-methylcytosine-specific restriction endonuclease McrA	N/A
structural_annotation	UHGV-1536880_18	PF02796,COG2771	N/A	N/A	N/A	N/A
KOfam	UHGV-1536880_20	K18830	51.9	0.000000000000018	pezA; HTH-type transcriptional regulator / antitoxin PezA	N/A
PHROG	UHGV-1536880_20	phrog_8	64.4	2.6e-18	transcriptional regulator	transcription regulation
UniRef90	UHGV-1536880_20	UniRef90_A0A374N9T4	117.0	1.58e-33	XRE family transcriptional regulator	N/A
eggNOG-mapper	UHGV-1536880_20	717605.Theco_0106	76.6	5.17e-17	Cro/C1-type HTH DNA-binding domain	N/A
Pfam	UHGV-1536880_20	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
COG	UHGV-1536880_20	COG1476	N/A	N/A	DNA-binding transcriptional regulator, XRE-family HTH domain	N/A
structural_annotation	UHGV-1536880_20	PF01381,NF041951,COG1396	N/A	N/A	N/A	N/A
KOfam	UHGV-1536880_21	K00390	94.0	1.6e-27	cysH; phosphoadenosine phosphosulfate reductase [EC:1.8.4.8 1.8.4.10]	N/A
PHROG	UHGV-1536880_21	phrog_424	121.9	4.7e-36	phosphoadenosine phosphosulfate reductase	moron, auxiliary metabolic gene and host takeover
UniRef90	UHGV-1536880_21	UniRef90_UPI001C034617	587.0	0	phosphoadenosine phosphosulfate reductase family protein	N/A
eggNOG-mapper	UHGV-1536880_21	1408437.JNJN01000032_gene2312	336.0	0	Phosphoadenosine phosphosulfate reductase	N/A
PADLOC	UHGV-1536880_21	BrxP_00001	76.7	1.9e-22	BrxP	BREX
Pfam	UHGV-1536880_21	PF01507	N/A	N/A	Phosphoadenosine phosphosulfate reductase family	PAPS_reduct
COG	UHGV-1536880_21	COG0175	N/A	N/A	3'-phosphoadenosine 5'-phosphosulfate sulfotransferase (PAPS reductase)/FAD synthetase or related enzyme	N/A
structural_annotation	UHGV-1536880_21	PF01507,MF_00063,NF010369,COG0175	N/A	N/A	N/A	N/A
structural_annotation	UHGV-1536880_24	PF02559,MF_00667,TIGR02861	N/A	N/A	N/A	N/A
PHROG	UHGV-1536880_25	phrog_140	92.8	4e-27	RusA-like Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1536880_25	UniRef90_A0A2N0UXU6	265.0	0	Holliday junction resolvase	N/A
eggNOG-mapper	UHGV-1536880_25	411462.DORLON_00806	206.0	0	Endodeoxyribonuclease RusA	N/A
Pfam	UHGV-1536880_25	PF05866	N/A	N/A	Endodeoxyribonuclease RusA	RusA
COG	UHGV-1536880_25	COG4570	N/A	N/A	Holliday junction resolvase RusA (prophage-encoded endonuclease)	N/A
structural_annotation	UHGV-1536880_25	PF05866,NF007305,COG4570	N/A	N/A	N/A	N/A
KOfam	UHGV-1536880_26	K07505	398.4	0	repA; regulatory protein RepA	N/A
PHROG	UHGV-1536880_26	phrog_2597	1177.2	0	DNA primase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1536880_26	UniRef90_A0A2N0UXP7	1464.0	0	Regulatory protein RepA	N/A
eggNOG-mapper	UHGV-1536880_26	394503.Ccel_3304	966.0	0	Primase C terminal 2 (PriCT-2)	N/A
Pfam	UHGV-1536880_26	PF08707	N/A	N/A	Primase C terminal 2 (PriCT-2)	PriCT_2
Pfam	UHGV-1536880_26	PF13481	N/A	N/A	AAA domain	AAA_25
COG	UHGV-1536880_26	COG3598	N/A	N/A	RecA-family ATPase	N/A
structural_annotation	UHGV-1536880_26	PF13481,PF16793,PF08220,MF_00350,MF_00700,NF006606,NF001641,COG3598,COG3285	N/A	N/A	N/A	N/A
KOfam	UHGV-1536880_27	K17677	362.2	0	IRC3; ATP-dependent helicase IRC3 [EC:5.6.2.-]	N/A
PHROG	UHGV-1536880_27	phrog_16	295.2	0	DNA helicase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1536880_27	UniRef90_A0A412ULZ3	1051.0	0	ATP-dependent helicase	N/A
eggNOG-mapper	UHGV-1536880_27	1235798.C817_03499	840.0	0	helicase superfamily c-terminal domain	N/A
PADLOC	UHGV-1536880_27	mREase_IV_00005	133.5	1.8e-39	Type IV methyl-directed restriction enzyme	RM
Pfam	UHGV-1536880_27	PF04851	N/A	N/A	Type III restriction enzyme, res subunit	ResIII
Pfam	UHGV-1536880_27	PF00271	N/A	N/A	Helicase conserved C-terminal domain	Helicase_C
COG	UHGV-1536880_27	COG1061	N/A	N/A	Superfamily II DNA or RNA helicase	N/A
structural_annotation	UHGV-1536880_27	PF04851,PF16203,MF_01489,NF008521,COG1061	N/A	N/A	N/A	N/A
PHROG	UHGV-1536880_28	phrog_2698	171.2	0	N/A	unknown function
UniRef90	UHGV-1536880_28	UniRef90_UPI000F54335B	199.0	0	N/A	N/A
eggNOG-mapper	UHGV-1536880_28	742723.HMPREF9477_00927	137.0	8.52e-39	N/A	N/A
structural_annotation	UHGV-1536880_28	PF17426,NF005674	N/A	N/A	N/A	N/A
PHROG	UHGV-1536880_29	phrog_124	263.9	0	Sak4-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1536880_29	UniRef90_A0A2N0UXR5	698.0	0	Phage nucleotide-binding protein	N/A
eggNOG-mapper	UHGV-1536880_29	411462.DORLON_00811	438.0	0	AAA domain	N/A
Pfam	UHGV-1536880_29	PF13479	N/A	N/A	AAA domain	AAA_24
structural_annotation	UHGV-1536880_29	PF13479,MF_00268,TIGR01618,COG0468	N/A	N/A	N/A	N/A
KOfam	UHGV-1536880_31	K03546	55.6	4.6e-16	sbcC, rad50; DNA repair protein SbcC/Rad50	N/A
PHROG	UHGV-1536880_31	phrog_1499	478.7	0	N/A	unknown function
UniRef90	UHGV-1536880_31	UniRef90_A0A2N0UXU2	749.0	0	Chromosome segregation protein	N/A
eggNOG-mapper	UHGV-1536880_31	645991.Sgly_0320	505.0	0	domain protein	N/A
Pfam	UHGV-1536880_31	PF13476	N/A	N/A	AAA domain	AAA_23
COG	UHGV-1536880_31	COG1196	N/A	N/A	Chromosome segregation ATPase Smc	N/A
structural_annotation	UHGV-1536880_31	TIGR03185,COG5293	N/A	N/A	N/A	N/A
PHROG	UHGV-1536880_32	phrog_323	78.4	1.1e-25	endonuclease	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1536880_32	UniRef90_UPI001C01CFF8	290.0	0	SANT/Myb domain-containing protein	N/A
eggNOG-mapper	UHGV-1536880_32	394503.Ccel_3305	340.0	0	SANT SWI3, ADA2, N-CoR and TFIIIB'' DNA-binding domains	N/A
dbAPIS	UHGV-1536880_32	APIS006	N/A	N/A	Trigger programmed cell death (PCD) by P4 prophage.	N/A
structural_annotation	UHGV-1536880_32	PF11112,NF040595	N/A	N/A	N/A	N/A
PHROG	UHGV-1536880_34	phrog_6058	42.4	0.0000000000079	N/A	unknown function
structural_annotation	UHGV-1536880_34	NF033787	N/A	N/A	N/A	N/A

All viral genomes

ID	Representative?	Length (bps)	% GC Content	CheckV Completeness	geNomad Score
UHGV-1536880	Yes	28,267	42	67	1