vOTU vOTU-102341

vOTU: vOTU-102341

Overview

Genome (FASTA) Annotation Track (GFF) Proteins (FASTA) Protein Annotation (TSV)

Cluster properties
vOTU ID	vOTU-102341
Number of genomes	1
Taxonomy (ICTV)
Taxonomy (UHGV)	vFAM-00004 → vSUBFAM-00079 → vOTU-102341
Host lineage	Bacteria → Firmicutes_A → Clostridia → Oscillospirales → Ruminococcaceae → Gemmiger
Host range breadth	Genus
Lifestyle	temperate (Evidence: BACPHLIP)

Representative genome
Genome ID	UHGV-0136555
Biosample ID	N/A
Genome length (bp)	29,582 bps
CheckV completeness	72.36% (Medium-quality)
CDS count	54
CDS density	90.52%
tRNA count	0
Integrase	No
Viral confidence	Confident

Host assignment details
Assignment method	CRISPR
CRISPR-predicted host lineage	Bacteria → Firmicutes_A → Clostridia → Oscillospirales → Ruminococcaceae → Gemmiger	Total connections	343	Host agreement	97.96
PHIST-predicted host lineage		Total connections		Host agreement

Representative genome content

Select to view: Genome Viewer Functional Annotation

Genome view (completeness: 72.36)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
PHROG	UHGV-0136555_1	phrog_33	73.9	3.9e-21	distal tail protein Dit	tail
UniRef90	UHGV-0136555_1	UniRef90_A0A1C6H6D2	123.0	5.04e-31	Phage-related protein	N/A
eggNOG-mapper	UHGV-0136555_1	1582149.A0A0A8WHP7_9CAUD	109.0	3.65e-26	Phage tail protein	N/A
structural_annotation	UHGV-0136555_1	PF20195,TIGR01633,COG4722	N/A	N/A	N/A	N/A
PHROG	UHGV-0136555_2	phrog_6900	259.9	0	tail length tape measure protein	tail
UniRef90	UHGV-0136555_2	UniRef90_A0A3D0EFB4	262.0	0	Phage tail protein (Fragment)	N/A
eggNOG-mapper	UHGV-0136555_2	536233.CLO_1577	296.0	0	tape measure	N/A
COG	UHGV-0136555_2	COG1196	N/A	N/A	Chromosome segregation ATPase Smc	N/A
structural_annotation	UHGV-0136555_2	PF20155	N/A	N/A	N/A	N/A
PHROG	UHGV-0136555_4	phrog_18646	52.2	0.0000000000000098	N/A	unknown function
PHROG	UHGV-0136555_5	phrog_885	72.2	5.6e-21	major tail protein	tail
UniRef90	UHGV-0136555_5	UniRef90_A0A843J9F0	182.0	0	Ig-like domain-containing protein	N/A
eggNOG-mapper	UHGV-0136555_5	1504822.CCNO01000012_gene492	214.0	0	N/A	N/A
structural_annotation	UHGV-0136555_5	PF06488,TIGR01603,COG5437	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0136555_6	PF11367	N/A	N/A	N/A	N/A
PHROG	UHGV-0136555_7	phrog_17977	82.5	3.5e-24	N/A	unknown function
UniRef90	UHGV-0136555_7	UniRef90_UPI00141211AB	87.0	9.78e-20	head-tail adaptor protein	N/A
structural_annotation	UHGV-0136555_7	PF07405,TIGR01563,COG5614	N/A	N/A	N/A	N/A
PHROG	UHGV-0136555_9	phrog_544	116.8	2.1e-34	major head protein	head and packaging
UniRef90	UHGV-0136555_9	UniRef90_A0A1C6B5R0	319.0	0	S-l_SbsC_C domain-containing protein	N/A
eggNOG-mapper	UHGV-0136555_9	476272.RUMHYD_01776	290.0	0	N/A	N/A
structural_annotation	UHGV-0136555_9	PF03864,MF_04119,TIGR04387,COG4834	N/A	N/A	N/A	N/A
PHROG	UHGV-0136555_10	phrog_194	44.1	0.0000000000039	head scaffolding protein	head and packaging
UniRef90	UHGV-0136555_10	UniRef90_A0A6B9SU02	121.0	7.38e-31	Fibronectin autolysin	N/A
structural_annotation	UHGV-0136555_10	PF06810	N/A	N/A	N/A	N/A
PHROG	UHGV-0136555_11	phrog_5	71.7	1.5e-20	tail completion or Neck1 protein	connector
UniRef90	UHGV-0136555_11	UniRef90_A0A3A9EIF3	201.0	0	HK97 gp10 family phage protein	N/A
eggNOG-mapper	UHGV-0136555_11	1280685.AUKC01000004_gene1630	110.0	3.55e-29	N/A	N/A
Pfam	UHGV-0136555_11	PF04883	N/A	N/A	Bacteriophage HK97-gp10, putative tail-component	HK97-gp10_like
NCBIFam	UHGV-0136555_11	TIGR01725.1	N/A	N/A	HK97-gp10 family putative phage morphogenesis protein	N/A
structural_annotation	UHGV-0136555_11	PF20039,TIGR01725,COG5005	N/A	N/A	N/A	N/A
PHROG	UHGV-0136555_14	phrog_2468	112.5	2.6e-33	head morphogenesis	head and packaging
UniRef90	UHGV-0136555_14	UniRef90_A0A7X5E1T7	414.0	0	Phage_Mu_F domain-containing protein	N/A
eggNOG-mapper	UHGV-0136555_14	1504822.CCNO01000013_gene286	184.0	0	cell adhesion	N/A
Pfam	UHGV-0136555_14	PF04233	N/A	N/A	Phage Mu protein F like protein	Phage_Mu_F
COG	UHGV-0136555_14	COG2369	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0136555_14	PF06152,TIGR01641,COG2369	N/A	N/A	N/A	N/A
PHROG	UHGV-0136555_16	phrog_8680	199.8	0	N/A	unknown function
UniRef90	UHGV-0136555_16	UniRef90_A0A844D688	301.0	0	N/A	N/A
eggNOG-mapper	UHGV-0136555_16	411470.RUMGNA_02208	187.0	0	N/A	N/A
Pfam	UHGV-0136555_16	PF14386	N/A	N/A	N/A	DUF4417
structural_annotation	UHGV-0136555_16	PF14386	N/A	N/A	N/A	N/A
PHROG	UHGV-0136555_17	phrog_64	172.1	0	portal protein	head and packaging
UniRef90	UHGV-0136555_17	UniRef90_UPI0018A8A301	607.0	0	phage portal protein	N/A
eggNOG-mapper	UHGV-0136555_17	673376.F2VHW1_9CAUD	214.0	0	Phage portal protein, SPP1 Gp6-like	N/A
Pfam	UHGV-0136555_17	PF05133	N/A	N/A	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
structural_annotation	UHGV-0136555_17	PF05133,MF_04120,TIGR01538,COG3567	N/A	N/A	N/A	N/A
KOfam	UHGV-0136555_18	K06909	398.9	0	xtmB; phage terminase large subunit	N/A
PHROG	UHGV-0136555_18	phrog_3717	160.7	0	terminase large subunit	head and packaging
UniRef90	UHGV-0136555_18	UniRef90_UPI001C3B9235	624.0	0	PBSX family phage terminase large subunit	N/A
eggNOG-mapper	UHGV-0136555_18	411471.SUBVAR_06507	577.0	0	Phage terminase, large subunit, PBSX family	N/A
Pfam	UHGV-0136555_18	PF04466	N/A	N/A	Phage terminase large subunit	Terminase_3
Pfam	UHGV-0136555_18	PF17288	N/A	N/A	Terminase RNAseH like domain	Terminase_3C
NCBIFam	UHGV-0136555_18	TIGR01547.1	N/A	N/A	PBSX family phage terminase large subunit	N/A
COG	UHGV-0136555_18	COG1783	N/A	N/A	Phage terminase large subunit	N/A
structural_annotation	UHGV-0136555_18	PF04466,PF17288,MF_04145,TIGR01547,COG1783	N/A	N/A	N/A	N/A
PHROG	UHGV-0136555_19	phrog_606	93.1	3.1e-27	terminase small subunit	head and packaging
UniRef90	UHGV-0136555_19	UniRef90_UPI00195648BB	181.0	0	DNA-packaging protein	N/A
eggNOG-mapper	UHGV-0136555_19	397290.C810_05185	157.0	0	DNA-packaging protein gp3	N/A
Pfam	UHGV-0136555_19	PF16677	N/A	N/A	DNA-packaging protein gp3	GP3_package
structural_annotation	UHGV-0136555_19	PF16677	N/A	N/A	N/A	N/A
PHROG	UHGV-0136555_20	phrog_36	73.9	2.6e-21	transcriptional regulator	transcription regulation
eggNOG-mapper	UHGV-0136555_20	658655.HMPREF0988_02569	51.2	0.00000426	sigma factor activity	N/A
Pfam	UHGV-0136555_20	PF07374	N/A	N/A	N/A	DUF1492
COG	UHGV-0136555_20	COG1191	N/A	N/A	DNA-directed RNA polymerase specialized sigma subunit	N/A
structural_annotation	UHGV-0136555_20	PF04545,PF18323,MF_00674,NF009172,COG1191	N/A	N/A	N/A	N/A
PHROG	UHGV-0136555_24	phrog_111	162.9	0	DNA methyltransferase	other
UniRef90	UHGV-0136555_24	UniRef90_A0A316S635	238.0	0	Adenine methyltransferase	N/A
eggNOG-mapper	UHGV-0136555_24	760568.Desku_0784	195.0	0	DNA N-6-adenine-methyltransferase	N/A
PADLOC	UHGV-0136555_24	oMTase_00015	192.5	0	orphan methyltransferase	RM
Pfam	UHGV-0136555_24	PF05869	N/A	N/A	DNA N-6-adenine-methyltransferase (Dam)	Dam
structural_annotation	UHGV-0136555_24	PF05869,MF_03187,TIGR01712,COG2263	N/A	N/A	N/A	N/A
PHROG	UHGV-0136555_25	phrog_7711	102.7	2e-30	N/A	unknown function
eggNOG-mapper	UHGV-0136555_25	886882.PPSC2_p0287	75.1	0.0000000000000135	N/A	N/A
PHROG	UHGV-0136555_28	phrog_2245	53.0	0.0000000000000063	nucleoside triphosphate pyrophosphohydrolase	other
KOfam	UHGV-0136555_29	K01160	56.4	9.2e-16	rusA; crossover junction endodeoxyribonuclease RusA [EC:3.1.21.10]	N/A
PHROG	UHGV-0136555_29	phrog_34	59.9	5e-17	RusA-like Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0136555_29	UniRef90_UPI0018ABA1B6	145.0	2.40042e-42	RusA family crossover junction endodeoxyribonuclease	N/A
eggNOG-mapper	UHGV-0136555_29	875454.BAEW01000002_gene491	108.0	6.97e-29	Endodeoxyribonuclease RusA	N/A
Pfam	UHGV-0136555_29	PF05866	N/A	N/A	Endodeoxyribonuclease RusA	RusA
COG	UHGV-0136555_29	COG4570	N/A	N/A	Holliday junction resolvase RusA (prophage-encoded endonuclease)	N/A
structural_annotation	UHGV-0136555_29	PF05866,NF007305,COG4570	N/A	N/A	N/A	N/A
KOfam	UHGV-0136555_30	K00390	63.0	3e-18	cysH; phosphoadenosine phosphosulfate reductase [EC:1.8.4.8 1.8.4.10]	N/A
PHROG	UHGV-0136555_30	phrog_424	91.0	4.9e-27	phosphoadenosine phosphosulfate reductase	moron, auxiliary metabolic gene and host takeover
UniRef90	UHGV-0136555_30	UniRef90_UPI0009E1B041	333.0	0	phosphoadenosine phosphosulfate reductase family protein	N/A
eggNOG-mapper	UHGV-0136555_30	1408437.JNJN01000032_gene2312	325.0	0	Phosphoadenosine phosphosulfate reductase	N/A
PADLOC	UHGV-0136555_30	BrxP_00001	46.1	0.00000000000022	BrxP	BREX
Pfam	UHGV-0136555_30	PF01507	N/A	N/A	Phosphoadenosine phosphosulfate reductase family	PAPS_reduct
COG	UHGV-0136555_30	COG0175	N/A	N/A	3'-phosphoadenosine 5'-phosphosulfate sulfotransferase (PAPS reductase)/FAD synthetase or related enzyme	N/A
structural_annotation	UHGV-0136555_30	PF01507,MF_00063,NF002537,COG0175	N/A	N/A	N/A	N/A
UniRef90	UHGV-0136555_31	UniRef90_K1SZ48	52.8	0.000000205	Phosphoadenosine phosphosulfate reductase (Fragment)	N/A
eggNOG-mapper	UHGV-0136555_31	411902.CLOBOL_06768	58.9	0.00000000213	Phosphoadenosine phosphosulfate reductase family	N/A
COG	UHGV-0136555_31	COG0175	N/A	N/A	3'-phosphoadenosine 5'-phosphosulfate sulfotransferase (PAPS reductase)/FAD synthetase or related enzyme	N/A
PHROG	UHGV-0136555_33	phrog_9804	40.1	0.00000000005	N/A	unknown function
structural_annotation	UHGV-0136555_33	PF11417	N/A	N/A	N/A	N/A
KOfam	UHGV-0136555_34	K02086	48.0	0.00000000000017	dnaD; DNA replication protein	N/A
PHROG	UHGV-0136555_34	phrog_186	93.1	3.8e-27	DnaD-like helicase loader	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0136555_34	UniRef90_A0A318KSV9	118.0	1.04e-28	DnaD/phage-associated family protein	N/A
eggNOG-mapper	UHGV-0136555_34	742733.HMPREF9469_01845	119.0	1.81e-29	N/A	N/A
Pfam	UHGV-0136555_34	PF07261	N/A	N/A	Replication initiation and membrane attachment	DnaB_2
NCBIFam	UHGV-0136555_34	TIGR01446.1	N/A	N/A	DnaD domain protein	N/A
structural_annotation	UHGV-0136555_34	PF07106,PF07261,MF_01177,TIGR01714,TIGR01446,COG5529	N/A	N/A	N/A	N/A
PHROG	UHGV-0136555_35	phrog_4973	54.9	0.0000000000000014	N/A	unknown function
UniRef90	UHGV-0136555_35	UniRef90_A0A3D3Y5F2	67.0	0.00000000000055	DNA-binding protein	N/A
eggNOG-mapper	UHGV-0136555_35	584708.Apau_1668	48.1	0.00000455	Helix-turn-helix domain	N/A
Pfam	UHGV-0136555_35	PF14090	N/A	N/A	Helix-turn-helix domain	HTH_39
structural_annotation	UHGV-0136555_35	PF14090,TIGR00373,COG4738	N/A	N/A	N/A	N/A
KOfam	UHGV-0136555_36	K03111	138.8	6.29996e-41	ssb; single-strand DNA-binding protein	N/A
PHROG	UHGV-0136555_36	phrog_44	145.2	3.60134e-43	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0136555_36	UniRef90_A0A1Q6T150	179.0	0	Single-stranded DNA-binding protein	N/A
eggNOG-mapper	UHGV-0136555_36	411471.SUBVAR_04646	171.0	0	Single-stranded DNA-binding protein	N/A
Pfam	UHGV-0136555_36	PF00436	N/A	N/A	Single-strand binding protein family	SSB
NCBIFam	UHGV-0136555_36	TIGR00621.2	N/A	N/A	single-stranded DNA-binding protein	N/A
COG	UHGV-0136555_36	COG0629	N/A	N/A	Single-stranded DNA-binding protein	N/A
HAMAP	UHGV-0136555_36	MF_00984	N/A	N/A	Single-stranded DNA-binding protein	N/A
structural_annotation	UHGV-0136555_36	PF00436,MF_00984,NF005579,COG0629	N/A	N/A	N/A	N/A
PHROG	UHGV-0136555_37	phrog_7566	54.7	0.0000000000000016	N/A	unknown function
eggNOG-mapper	UHGV-0136555_37	1507.HMPREF0262_00433	49.3	0.00000283	N/A	N/A
PHROG	UHGV-0136555_38	phrog_72	43.0	0.0000000000036	NinB/ Orf homologous recombination mediator	DNA, RNA and nucleotide metabolism
eggNOG-mapper	UHGV-0136555_38	445972.ANACOL_01825	115.0	3.09e-30	N/A	N/A
structural_annotation	UHGV-0136555_38	PF05772	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0136555_39	1041142.ATTP01000043_gene5324	59.3	0.000000108	N/A	N/A
PHROG	UHGV-0136555_42	phrog_5070	98.6	4.7e-29	N/A	unknown function
UniRef90	UHGV-0136555_42	UniRef90_A0A174CB23	131.0	4.54e-35	Predicted acyltransferase	N/A
eggNOG-mapper	UHGV-0136555_42	411470.RUMGNA_02189	123.0	3.13e-33	Catalyzes the N-acylation of UDP-3-O-acylglucosamine using 3-hydroxyacyl-ACP as the acyl donor. Is involved in the biosynthesis of lipid A, a phosphorylated glycolipid that anchors the lipopolysaccharide to the outer membrane of the cell	N/A
COG	UHGV-0136555_42	COG1044	N/A	N/A	UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase	N/A
eggNOG-mapper	UHGV-0136555_44	596152.DesU5LDRAFT_1910	86.3	4.02e-18	N/A	N/A
structural_annotation	UHGV-0136555_44	PF03787,TIGR02581,COG1604	N/A	N/A	N/A	N/A
UniRef90	UHGV-0136555_45	UniRef90_A0A367GIH6	104.0	3.56e-27	HTH cro/C1-type domain-containing protein	N/A
Pfam	UHGV-0136555_45	PF13443	N/A	N/A	Cro/C1-type HTH DNA-binding domain	HTH_26
COG	UHGV-0136555_45	COG3655	N/A	N/A	DNA-binding transcriptional regulator, XRE family	N/A
structural_annotation	UHGV-0136555_45	PF05339,MF_00535,NF041951,COG3655	N/A	N/A	N/A	N/A
PHROG	UHGV-0136555_46	phrog_8	51.7	0.000000000000022	transcriptional regulator	transcription regulation
UniRef90	UHGV-0136555_46	UniRef90_UPI001C009F10	83.6	7.55e-20	helix-turn-helix transcriptional regulator	N/A
eggNOG-mapper	UHGV-0136555_46	665950.HMPREF1025_02561	60.1	0.0000000000196	sequence-specific DNA binding	N/A
Pfam	UHGV-0136555_46	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
COG	UHGV-0136555_46	COG1396	N/A	N/A	Transcriptional regulator, contains XRE-family HTH domain	N/A
structural_annotation	UHGV-0136555_46	PF01381,NF041951,COG1396	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0136555_47	PF12844,MF_00535,NF041951,COG3655	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0136555_48	PF10007,MF_01819,TIGR03433,COG1733	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0136555_50	PF12688	N/A	N/A	N/A	N/A
KOfam	UHGV-0136555_54	K14059	162.0	0	int; integrase	N/A
PHROG	UHGV-0136555_54	phrog_1	156.9	0	integrase	integration and excision
UniRef90	UHGV-0136555_54	UniRef90_A0A1Y4T0F9	350.0	0	Tyr recombinase domain-containing protein	N/A
eggNOG-mapper	UHGV-0136555_54	748224.HMPREF9436_03382	270.0	0	Belongs to the 'phage' integrase family	N/A
Pfam	UHGV-0136555_54	PF00589	N/A	N/A	Phage integrase family	Phage_integrase
COG	UHGV-0136555_54	COG0582	N/A	N/A	Integrase/recombinase, includes phage integrase	N/A
structural_annotation	UHGV-0136555_54	PF00589,PF14659,MF_01808,NF007246,COG4973	N/A	N/A	N/A	N/A

All viral genomes

ID	Representative?	Length (bps)	% GC Content	CheckV Completeness	geNomad Score
UHGV-0136555	Yes	29,582	50	72	1