vOTU vOTU-102474

vOTU: vOTU-102474

Overview

Genome (FASTA) Annotation Track (GFF) Proteins (FASTA) Protein Annotation (TSV)

Cluster properties
vOTU ID	vOTU-102474
Number of genomes	1
Taxonomy (ICTV)	Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes
Taxonomy (UHGV)	vFAM-00005 → vSUBFAM-03706 → vOTU-102474
Host lineage	Bacteria → Firmicutes_A → Clostridia → Tissierellales → Peptoniphilaceae → Parvimonas → Parvimonas micra
Host range breadth	Species
Lifestyle	lytic (evidence: BACPHLIP)

Representative genome
Genome ID	UHGV-1447526
Biosample ID	SAMEA2738012
Genome length (bp)	28,179 bps
CheckV completeness	89.46% (Medium-quality)
CDS count	49
CDS density	94.77%
tRNA count	0
Integrase	No
Viral confidence	Confident

Host assignment details
Assignment method	CRISPR
CRISPR-predicted host lineage	Bacteria → Firmicutes_A → Clostridia → Tissierellales → Peptoniphilaceae → Parvimonas → Parvimonas micra	Total connections	21	Host agreement	90.48
PHIST-predicted host lineage		Total connections		Host agreement

Representative genome content

Select to view: Genome Viewer Functional Annotation

Genome view (completeness: 89.46)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
KOfam	UHGV-1447526_2	K01447	88.7	9.3e-26	xlyAB; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]	N/A
PHROG	UHGV-1447526_2	phrog_3088	150.9	8.40779e-45	amidase	lysis
UniRef90	UHGV-1447526_2	UniRef90_UPI00040F5872	612.0	0	N-acetylmuramoyl-L-alanine amidase	N/A
eggNOG-mapper	UHGV-1447526_2	411465.PEPMIC_00752	408.0	0	N-acetylmuramoyl-L-alanine amidase	N/A
Pfam	UHGV-1447526_2	PF01510	N/A	N/A	N-acetylmuramoyl-L-alanine amidase	Amidase_2
Pfam	UHGV-1447526_2	PF13457	N/A	N/A	GW (Gly-Tryp) dipeptide domain	GW
COG	UHGV-1447526_2	COG5632	N/A	N/A	N-acetylmuramoyl-L-alanine amidase CwlA	N/A
PHROG	UHGV-1447526_3	phrog_199	56.6	3.5e-16	holin	lysis
UniRef90	UHGV-1447526_3	UniRef90_UPI00040EB37D	223.0	0	phage holin family protein	N/A
eggNOG-mapper	UHGV-1447526_3	482234.SCAZ3_03820	139.0	4.10006e-41	Bacteriophage holin family	N/A
Pfam	UHGV-1447526_3	PF05105	N/A	N/A	Bacteriophage holin family	Phage_holin_4_1
NCBIFam	UHGV-1447526_3	TIGR01593.1	N/A	N/A	toxin secretion/phage lysis holin	N/A
structural_annotation	UHGV-1447526_3	PF05105,TIGR01593,COG4824	N/A	N/A	N/A	N/A
Pfam	UHGV-1447526_4	PF02839	N/A	N/A	Carbohydrate-binding module family 5/12	CBM_5_12
structural_annotation	UHGV-1447526_4	PF11314,PF14600,PF02839	N/A	N/A	N/A	N/A
PHROG	UHGV-1447526_5	phrog_372	248.5	0	tail protein	tail
UniRef90	UHGV-1447526_5	UniRef90_UPI0008FE8894	177.0	4.62428e-44	N/A	N/A
eggNOG-mapper	UHGV-1447526_5	411465.PEPMIC_00747	642.0	0	the current gene model (or a revised gene model) may contain a frame shift	N/A
Pfam	UHGV-1447526_5	PF05895	N/A	N/A	N/A	DUF859
COG	UHGV-1447526_5	COG4675	N/A	N/A	Phage tail collar domain	N/A
structural_annotation	UHGV-1447526_5	PF05895,MF_04116,NF010681,COG3291	N/A	N/A	N/A	N/A
PHROG	UHGV-1447526_6	phrog_1067	188.5	0	minor head protein	head and packaging
UniRef90	UHGV-1447526_6	UniRef90_A0A3B7DGJ3	1491.0	0	Prophage_tail domain-containing protein	N/A
eggNOG-mapper	UHGV-1447526_6	875454.BAEW01000017_gene1585	496.0	0	Phage minor structural protein	N/A
Pfam	UHGV-1447526_6	PF06605	N/A	N/A	Prophage endopeptidase tail	Prophage_tail
NCBIFam	UHGV-1447526_6	TIGR01665.1	N/A	N/A	phage tail spike protein	N/A
COG	UHGV-1447526_6	COG4926	N/A	N/A	Phage-related protein	N/A
PHROG	UHGV-1447526_7	phrog_33	50.2	0.000000000000063	distal tail protein Dit	tail
UniRef90	UHGV-1447526_7	UniRef90_A0A3B7DPW1	456.0	0	Phage tail protein	N/A
eggNOG-mapper	UHGV-1447526_7	875454.BAEW01000017_gene1586	172.0	0	Phage tail protein	N/A
Pfam	UHGV-1447526_7	PF05709	N/A	N/A	Phage tail protein RIFT-related domain	Sipho_tail
NCBIFam	UHGV-1447526_7	TIGR01633.1	N/A	N/A	distal tail protein Dit	N/A
COG	UHGV-1447526_7	COG4722	N/A	N/A	Phage-related protein YomH	N/A
structural_annotation	UHGV-1447526_7	PF05709,PF20753,TIGR01633,COG4722	N/A	N/A	N/A	N/A
PHROG	UHGV-1447526_8	phrog_6900	257.6	0	tail length tape measure protein	tail
UniRef90	UHGV-1447526_8	UniRef90_UPI00148DE247	326.0	0	phage tail protein	N/A
eggNOG-mapper	UHGV-1447526_8	1123263.AUKY01000068_gene491	420.0	0	nuclear chromosome segregation	N/A
COG	UHGV-1447526_8	COG5412	N/A	N/A	Phage-related protein	N/A
PHROG	UHGV-1447526_9	phrog_1633	100.2	1.6e-29	N/A	unknown function
UniRef90	UHGV-1447526_9	UniRef90_UPI00028859CE	95.1	3.03e-23	N/A	N/A
eggNOG-mapper	UHGV-1447526_9	875454.BAEW01000017_gene1588	95.1	5.08e-24	N/A	N/A
Pfam	UHGV-1447526_9	PF17318	N/A	N/A	N/A	DUF5361
structural_annotation	UHGV-1447526_9	PF17318	N/A	N/A	N/A	N/A
PHROG	UHGV-1447526_10	phrog_1526	86.2	2.9e-25	N/A	unknown function
UniRef90	UHGV-1447526_10	UniRef90_D2BQF7	85.5	4.83e-20	N/A	N/A
eggNOG-mapper	UHGV-1447526_10	1231377.C426_1729	85.5	8.1e-21	N/A	N/A
PHROG	UHGV-1447526_11	phrog_117	158.9	0	major tail protein	tail
UniRef90	UHGV-1447526_11	UniRef90_A0A3B7DGA1	353.0	0	Phage tail protein	N/A
eggNOG-mapper	UHGV-1447526_11	879308.HMPREF9130_1239	236.0	0	domain, Protein	N/A
COG	UHGV-1447526_11	COG5492	N/A	N/A	N/A	N/A
structural_annotation	UHGV-1447526_11	PF04630,TIGR01603,COG5437	N/A	N/A	N/A	N/A
PHROG	UHGV-1447526_12	phrog_123	53.3	0.0000000000000053	tail terminator	connector
UniRef90	UHGV-1447526_12	UniRef90_D2BQF4	140.0	6.46994e-41	N/A	N/A
eggNOG-mapper	UHGV-1447526_12	1231377.C426_1732	140.0	5.37958e-42	N/A	N/A
structural_annotation	UHGV-1447526_12	PF06141	N/A	N/A	N/A	N/A
PHROG	UHGV-1447526_13	phrog_387	90.8	9.5e-27	neck protein	connector
UniRef90	UHGV-1447526_13	UniRef90_A0A139NAV7	94.4	8.57e-24	Phage-associated protein	N/A
eggNOG-mapper	UHGV-1447526_13	1121864.OMO_02156	95.5	5.01e-25	N/A	N/A
PHROG	UHGV-1447526_14	phrog_501	91.9	5.6e-27	head closure Hc1	connector
UniRef90	UHGV-1447526_14	UniRef90_A0A139QHM6	145.0	5.2829e-43	Phage-associated protein	N/A
eggNOG-mapper	UHGV-1447526_14	1321784.HMPREF1987_01076	155.0	0	N/A	N/A
structural_annotation	UHGV-1447526_14	PF12206,COG5614	N/A	N/A	N/A	N/A
PHROG	UHGV-1447526_15	phrog_137	108.0	5.4e-32	head-tail adaptor Ad1	connector
UniRef90	UHGV-1447526_15	UniRef90_UPI001356BC1F	175.0	0	phage Gp19/Gp15/Gp42 family protein	N/A
eggNOG-mapper	UHGV-1447526_15	1231377.C426_1735	172.0	0	Phage protein Gp19/Gp15/Gp42	N/A
Pfam	UHGV-1447526_15	PF09355	N/A	N/A	N/A	Phage_Gp19
structural_annotation	UHGV-1447526_15	PF09355	N/A	N/A	N/A	N/A
PHROG	UHGV-1447526_17	phrog_32396	153.4	0	N/A	unknown function
UniRef90	UHGV-1447526_17	UniRef90_A0A3B7DPV3	497.0	0	Phage major capsid protein	N/A
eggNOG-mapper	UHGV-1447526_17	1321784.HMPREF1987_01073	431.0	0	Phage capsid family	N/A
Pfam	UHGV-1447526_17	PF05065	N/A	N/A	Phage capsid family	Phage_capsid
structural_annotation	UHGV-1447526_17	PF05065,MF_04119,TIGR01554,COG4653	N/A	N/A	N/A	N/A
PHROG	UHGV-1447526_18	phrog_233	105.6	7e-31	head scaffolding protein	head and packaging
UniRef90	UHGV-1447526_18	UniRef90_A0A3B7DKP2	239.0	0	N/A	N/A
eggNOG-mapper	UHGV-1447526_18	1321784.HMPREF1987_01072	120.0	1.53e-32	N/A	N/A
Pfam	UHGV-1447526_18	PF14265	N/A	N/A	N/A	DUF4355
structural_annotation	UHGV-1447526_18	PF14265	N/A	N/A	N/A	N/A
PHROG	UHGV-1447526_19	phrog_17688	360.0	0	N/A	unknown function
UniRef90	UHGV-1447526_19	UniRef90_A0A3B7DJA0	737.0	0	Terminase	N/A
eggNOG-mapper	UHGV-1447526_19	1423775.BAMN01000011_gene606	662.0	0	phage terminase, large subunit	N/A
COG	UHGV-1447526_19	COG4626	N/A	N/A	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	N/A
structural_annotation	UHGV-1447526_19	PF20441,PF03354,MF_04146,NF033889,COG4626	N/A	N/A	N/A	N/A
PHROG	UHGV-1447526_21	phrog_2494	284.1	0	minor head protein	head and packaging
UniRef90	UHGV-1447526_21	UniRef90_A0A380KN39	217.0	0	Gp35	N/A
eggNOG-mapper	UHGV-1447526_21	875454.BAEW01000017_gene1600	231.0	0	N/A	N/A
PHROG	UHGV-1447526_22	phrog_104	286.5	0	portal protein	head and packaging
UniRef90	UHGV-1447526_22	UniRef90_A0A3B7DS99	665.0	0	Phage portal protein	N/A
eggNOG-mapper	UHGV-1447526_22	938288.HG326226_gene854	567.0	0	Phage portal protein, SPP1 Gp6-like	N/A
structural_annotation	UHGV-1447526_22	PF05133,MF_04120,TIGR01538,COG3567	N/A	N/A	N/A	N/A
PHROG	UHGV-1447526_23	phrog_338	111.4	1e-32	HNH endonuclease	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1447526_23	UniRef90_A0A3B7DVB3	239.0	0	HNH endonuclease	N/A
eggNOG-mapper	UHGV-1447526_23	1321784.HMPREF1987_01066	182.0	0	HNH endonuclease domain protein	N/A
Pfam	UHGV-1447526_23	PF01844	N/A	N/A	HNH endonuclease	HNH
COG	UHGV-1447526_23	COG1403	N/A	N/A	5-methylcytosine-specific restriction endonuclease McrA	N/A
structural_annotation	UHGV-1447526_23	PF01844,COG1403	N/A	N/A	N/A	N/A
PHROG	UHGV-1447526_24	phrog_36	63.2	5e-18	transcriptional regulator	transcription regulation
structural_annotation	UHGV-1447526_24	PF07374,TIGR01636	N/A	N/A	N/A	N/A
PHROG	UHGV-1447526_26	phrog_355	75.2	8e-22	nucleoside 2-deoxyribosyltransferase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1447526_26	UniRef90_UPI00042076A1	232.0	0	N/A	N/A
Pfam	UHGV-1447526_26	PF14359	N/A	N/A	N/A	DUF4406
COG	UHGV-1447526_26	COG3613	N/A	N/A	Nucleoside 2-deoxyribosyltransferase	N/A
KOfam	UHGV-1447526_27	K03700	90.7	2.2e-26	recU; recombination protein U	N/A
PHROG	UHGV-1447526_27	phrog_843	137.4	5.90003e-41	Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1447526_27	UniRef90_UPI00040412AF	351.0	0	Holliday junction resolvase RecU	N/A
eggNOG-mapper	UHGV-1447526_27	411465.PEPMIC_00727	225.0	0	Endonuclease that resolves Holliday junction intermediates in genetic recombination. Cleaves mobile four-strand junctions by introducing symmetrical nicks in paired strands. Promotes annealing of linear ssDNA with homologous dsDNA. Required for DNA repair, homologous recombination and chromosome segregation	N/A
Pfam	UHGV-1447526_27	PF03838	N/A	N/A	Recombination protein U	RecU
COG	UHGV-1447526_27	COG3331	N/A	N/A	Penicillin-binding protein-related factor A, putative recombinase	N/A
PHROG	UHGV-1447526_28	phrog_25754	50.4	0.000000000000024	N/A	unknown function
structural_annotation	UHGV-1447526_28	PF18195,MF_01077,NF000936,COG4568	N/A	N/A	N/A	N/A
KOfam	UHGV-1447526_32	K06223	222.0	0	dam; DNA adenine methylase [EC:2.1.1.72]	N/A
PHROG	UHGV-1447526_32	phrog_56	186.7	0	DNA methyltransferase	other
UniRef90	UHGV-1447526_32	UniRef90_A8SKM6	513.0	0	DNA adenine methylase	N/A
eggNOG-mapper	UHGV-1447526_32	411465.PEPMIC_00725	513.0	0	D12 class N6 adenine-specific DNA methyltransferase	N/A
PADLOC	UHGV-1447526_32	MTase_II_00030	269.8	0	Type II methyltransferase	RM
Pfam	UHGV-1447526_32	PF02086	N/A	N/A	D12 class N6 adenine-specific DNA methyltransferase	MethyltransfD12
COG	UHGV-1447526_32	COG0338	N/A	N/A	DNA-adenine methylase	N/A
structural_annotation	UHGV-1447526_32	PF02086,MF_01872,NF008152,COG0338	N/A	N/A	N/A	N/A
PHROG	UHGV-1447526_33	phrog_6072	53.2	0.000000000000006	N/A	unknown function
PHROG	UHGV-1447526_35	phrog_3584	259.0	0	replication initiation protein	DNA, RNA and nucleotide metabolism
eggNOG-mapper	UHGV-1447526_35	411465.PEPMIC_00724	377.0	0	N/A	N/A
structural_annotation	UHGV-1447526_35	PF21578	N/A	N/A	N/A	N/A
PHROG	UHGV-1447526_37	phrog_98	94.3	1.1e-27	N/A	unknown function
UniRef90	UHGV-1447526_37	UniRef90_UPI0004299263	244.0	0	YopX family protein	N/A
eggNOG-mapper	UHGV-1447526_37	649747.HMPREF0083_01040	75.1	9.84e-16	YopX protein	N/A
Pfam	UHGV-1447526_37	PF09643	N/A	N/A	YopX protein	YopX
NCBIFam	UHGV-1447526_37	TIGR01671.1	N/A	N/A	phage conserved hypothetical protein TIGR01671	N/A
structural_annotation	UHGV-1447526_37	PF09643,TIGR01671	N/A	N/A	N/A	N/A
KOfam	UHGV-1447526_39	K03111	105.1	1.1e-30	ssb; single-strand DNA-binding protein	N/A
PHROG	UHGV-1447526_39	phrog_44	101.7	9.8e-30	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1447526_39	UniRef90_A8SKL9	262.0	0	Single-stranded DNA-binding protein	N/A
eggNOG-mapper	UHGV-1447526_39	411465.PEPMIC_00719	262.0	0	Single-stranded DNA-binding protein	N/A
Pfam	UHGV-1447526_39	PF00436	N/A	N/A	Single-strand binding protein family	SSB
NCBIFam	UHGV-1447526_39	TIGR00621.2	N/A	N/A	single-stranded DNA-binding protein	N/A
COG	UHGV-1447526_39	COG0629	N/A	N/A	Single-stranded DNA-binding protein	N/A
HAMAP	UHGV-1447526_39	MF_00984	N/A	N/A	Single-stranded DNA-binding protein	N/A
structural_annotation	UHGV-1447526_39	PF00436,MF_00984,NF005580,COG0629	N/A	N/A	N/A	N/A
UniRef90	UHGV-1447526_47	UniRef90_A0A533STR5	62.8	0.0000000000148	Helix-turn-helix transcriptional regulator	N/A
eggNOG-mapper	UHGV-1447526_47	887929.HMP0721_1290	57.4	0.000000000448	Helix-turn-helix domain of resolvase	N/A
structural_annotation	UHGV-1447526_47	PF01381,NF041951,COG1476	N/A	N/A	N/A	N/A
KOfam	UHGV-1447526_48	K22299	50.2	0.000000000000062	rghR; HTH-type transcriptional regulator, competence development regulator	N/A
PHROG	UHGV-1447526_48	phrog_8	57.3	4e-16	transcriptional regulator	transcription regulation
UniRef90	UHGV-1447526_48	UniRef90_A8SKK6	131.0	2.58e-37	DNA-binding helix-turn-helix protein	N/A
eggNOG-mapper	UHGV-1447526_48	411465.PEPMIC_00709	131.0	4.34e-38	Helix-turn-helix XRE-family like proteins	N/A
Pfam	UHGV-1447526_48	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
COG	UHGV-1447526_48	COG1396	N/A	N/A	Transcriptional regulator, contains XRE-family HTH domain	N/A
structural_annotation	UHGV-1447526_48	PF12844,MF_00535,NF041951,COG1476	N/A	N/A	N/A	N/A
PHROG	UHGV-1447526_49	phrog_87	47.8	0.00000000000018	metallo-protease	other
UniRef90	UHGV-1447526_49	UniRef90_UPI00124C33E6	68.2	0.0000000000138	ImmA/IrrE family metallo-endopeptidase	N/A
eggNOG-mapper	UHGV-1447526_49	411465.PEPMIC_00707	263.0	0	Zn peptidase	N/A
COG	UHGV-1447526_49	COG2856	N/A	N/A	Zn-dependent peptidase ImmA, M78 family	N/A
structural_annotation	UHGV-1447526_49	PF06114,COG2856	N/A	N/A	N/A	N/A

All viral genomes

ID	Representative?	Length (bps)	% GC Content	CheckV Completeness	geNomad Score
UHGV-1447526	Yes	28,179	29	89	1