vOTU vOTU-103801

vOTU: vOTU-103801

Overview

Genome (FASTA) Annotation Track (GFF) Proteins (FASTA) Protein Annotation (TSV)

Cluster properties
vOTU ID	vOTU-103801
Number of genomes	4
Taxonomy (ICTV)
Taxonomy (UHGV)	vFAM-00004 → vSUBFAM-00005 → vGENUS-12499 → vOTU-103801
Host lineage	Bacteria → Firmicutes_A → Clostridia → Oscillospirales → Oscillospiraceae → CAG-83
Host range breadth	Genus
Lifestyle	lytic (Evidence: BACPHLIP)

Representative genome
Genome ID	UHGV-1479464
Biosample ID	SAMN00792021
Genome length (bp)	30,033 bps
CheckV completeness	67.93% (Medium-quality)
CDS count	44
CDS density	97.68%
tRNA count	1
Integrase	No
Viral confidence	Confident

Host assignment details
Assignment method	CRISPR
CRISPR-predicted host lineage	Bacteria → Firmicutes_A → Clostridia → Oscillospirales → Oscillospiraceae → CAG-83	Total connections	206	Host agreement	70.39
PHIST-predicted host lineage		Total connections		Host agreement

Representative genome content

Select to view: Genome Viewer Functional Annotation

Genome view (completeness: 67.93)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
PHROG	UHGV-1479464_1	phrog_372	234.8	0	tail protein	tail
UniRef90	UHGV-1479464_1	UniRef90_UPI001373A0FD	246.0	0	N/A	N/A
eggNOG-mapper	UHGV-1479464_1	1235802.C823_05263	213.0	0	N/A	N/A
Pfam	UHGV-1479464_1	PF05895	N/A	N/A	N/A	DUF859
COG	UHGV-1479464_1	COG4675	N/A	N/A	Phage tail collar domain	N/A
structural_annotation	UHGV-1479464_1	PF05895,MF_04116,NF010681,COG3401,COG4675	N/A	N/A	N/A	N/A
PHROG	UHGV-1479464_2	phrog_6616	102.8	3.3e-31	tail protein	tail
eggNOG-mapper	UHGV-1479464_2	469596.HMPREF9488_01318	294.0	0	N/A	N/A
structural_annotation	UHGV-1479464_2	PF05113,NF033848,COG3500	N/A	N/A	N/A	N/A
PHROG	UHGV-1479464_3	phrog_1194	118.0	4.1e-35	N/A	unknown function
UniRef90	UHGV-1479464_3	UniRef90_A0A4U9RD70	110.0	4.3e-29	Lj965 prophage protein	N/A
eggNOG-mapper	UHGV-1479464_3	469596.HMPREF9488_01317	117.0	1.59e-32	N/A	N/A
Pfam	UHGV-1479464_3	PF20458	N/A	N/A	N/A	DUF6711
structural_annotation	UHGV-1479464_3	PF20458,TIGR02126,COG3499	N/A	N/A	N/A	N/A
PHROG	UHGV-1479464_4	phrog_1535	107.4	0	tail length tape measure protein	tail
UniRef90	UHGV-1479464_4	UniRef90_A0A810PX76	246.0	0	Phage tail tape measure protein	N/A
eggNOG-mapper	UHGV-1479464_4	1235797.C816_04182	468.0	0	SLT domain	N/A
COG	UHGV-1479464_4	COG1511	N/A	N/A	N/A	N/A
structural_annotation	UHGV-1479464_4	PF05546,TIGR02559	N/A	N/A	N/A	N/A
PHROG	UHGV-1479464_5	phrog_706	123.9	1.2e-36	N/A	unknown function
UniRef90	UHGV-1479464_5	UniRef90_UPI000682A80B	247.0	0	Gp15 family bacteriophage protein	N/A
eggNOG-mapper	UHGV-1479464_5	693746.OBV_18170	234.0	0	Bacteriophage Gp15 protein	N/A
Pfam	UHGV-1479464_5	PF06854	N/A	N/A	Bacteriophage Gp15 protein	Phage_Gp15
structural_annotation	UHGV-1479464_5	PF06854	N/A	N/A	N/A	N/A
PHROG	UHGV-1479464_6	phrog_11299	87.7	1.4e-25	N/A	unknown function
eggNOG-mapper	UHGV-1479464_6	693746.OBV_18160	111.0	1.33e-29	N/A	N/A
structural_annotation	UHGV-1479464_6	PF10666	N/A	N/A	N/A	N/A
PHROG	UHGV-1479464_7	phrog_3099	94.4	1.3e-27	N/A	unknown function
eggNOG-mapper	UHGV-1479464_7	1232443.BAIA02000078_gene23	236.0	0	N/A	N/A
structural_annotation	UHGV-1479464_7	TIGR02126	N/A	N/A	N/A	N/A
PHROG	UHGV-1479464_8	phrog_3266	44.7	0.000000000002	tail completion	connector
eggNOG-mapper	UHGV-1479464_8	1232443.BAIA02000078_gene24	153.0	0	N/A	N/A
structural_annotation	UHGV-1479464_8	PF12691	N/A	N/A	N/A	N/A
PHROG	UHGV-1479464_9	phrog_556	78.2	7.7e-23	minor head protein	head and packaging
UniRef90	UHGV-1479464_9	UniRef90_UPI00195E1497	150.0	3.50325e-44	minor capsid protein	N/A
eggNOG-mapper	UHGV-1479464_9	642492.Clole_0824	63.9	0.0000000000725	Minor capsid protein	N/A
Pfam	UHGV-1479464_9	PF11114	N/A	N/A	Minor capsid protein	Minor_capsid_2
structural_annotation	UHGV-1479464_9	PF11114	N/A	N/A	N/A	N/A
PHROG	UHGV-1479464_10	phrog_3366	85.6	5.7e-25	N/A	unknown function
eggNOG-mapper	UHGV-1479464_10	1226322.HMPREF1545_00053	154.0	0	N/A	N/A
structural_annotation	UHGV-1479464_10	PF20536,TIGR01563	N/A	N/A	N/A	N/A
PHROG	UHGV-1479464_11	phrog_541	105.9	2.5e-31	head-tail adaptor	connector
eggNOG-mapper	UHGV-1479464_11	411470.RUMGNA_02220	63.5	0.0000000000624	N/A	N/A
PHROG	UHGV-1479464_12	phrog_10	171.9	0	major head protein	head and packaging
UniRef90	UHGV-1479464_12	UniRef90_A0A2U1BEF2	513.0	0	HK97 family phage major capsid protein	N/A
eggNOG-mapper	UHGV-1479464_12	1226322.HMPREF1545_00050	472.0	0	Phage capsid family	N/A
Pfam	UHGV-1479464_12	PF05065	N/A	N/A	Phage capsid family	Phage_capsid
Pfam	UHGV-1479464_12	PF02368	N/A	N/A	Bacterial Ig-like domain (group 2)	Big_2
NCBIFam	UHGV-1479464_12	TIGR01554.2	N/A	N/A	phage major capsid protein	N/A
COG	UHGV-1479464_12	COG4653	N/A	N/A	Predicted phage phi-C31 gp36 major capsid-like protein	N/A
structural_annotation	UHGV-1479464_12	PF05065,PF13620,MF_04119,TIGR01554,COG4653	N/A	N/A	N/A	N/A
PHROG	UHGV-1479464_13	phrog_2303	56.9	2.6e-16	head scaffolding protein	head and packaging
eggNOG-mapper	UHGV-1479464_13	1226322.HMPREF1545_00049	176.0	0	N/A	N/A
PHROG	UHGV-1479464_15	phrog_581	270.2	0	minor head protein	head and packaging
UniRef90	UHGV-1479464_15	UniRef90_UPI001D080D49	506.0	0	phage minor capsid protein	N/A
eggNOG-mapper	UHGV-1479464_15	1226322.HMPREF1545_00046	330.0	0	Phage minor capsid protein 2	N/A
Pfam	UHGV-1479464_15	PF06152	N/A	N/A	Phage minor capsid protein 2	Phage_min_cap2
COG	UHGV-1479464_15	COG2369	N/A	N/A	N/A	N/A
structural_annotation	UHGV-1479464_15	PF06152	N/A	N/A	N/A	N/A
PHROG	UHGV-1479464_16	phrog_8680	230.6	0	N/A	unknown function
UniRef90	UHGV-1479464_16	UniRef90_A0A3R6D7I3	262.0	0	N/A	N/A
eggNOG-mapper	UHGV-1479464_16	411470.RUMGNA_02208	236.0	0	N/A	N/A
Pfam	UHGV-1479464_16	PF14386	N/A	N/A	N/A	DUF4417
structural_annotation	UHGV-1479464_16	PF14386	N/A	N/A	N/A	N/A
PHROG	UHGV-1479464_18	phrog_533	366.2	0	portal protein	head and packaging
UniRef90	UHGV-1479464_18	UniRef90_UPI0006C81717	696.0	0	phage portal protein	N/A
eggNOG-mapper	UHGV-1479464_18	1226322.HMPREF1545_00044	606.0	0	N/A	N/A
Pfam	UHGV-1479464_18	PF05133	N/A	N/A	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
structural_annotation	UHGV-1479464_18	PF05133,MF_04120,TIGR01542,COG5511	N/A	N/A	N/A	N/A
KOfam	UHGV-1479464_19	K06909	376.4	0	xtmB; phage terminase large subunit	N/A
PHROG	UHGV-1479464_19	phrog_3717	156.9	0	terminase large subunit	head and packaging
UniRef90	UHGV-1479464_19	UniRef90_A0A2U1BEH4	711.0	0	PBSX family phage terminase large subunit	N/A
eggNOG-mapper	UHGV-1479464_19	1123511.KB905868_gene187	459.0	0	Phage terminase large subunit	N/A
Pfam	UHGV-1479464_19	PF04466	N/A	N/A	Phage terminase large subunit	Terminase_3
Pfam	UHGV-1479464_19	PF17288	N/A	N/A	Terminase RNAseH like domain	Terminase_3C
NCBIFam	UHGV-1479464_19	TIGR01547.1	N/A	N/A	PBSX family phage terminase large subunit	N/A
COG	UHGV-1479464_19	COG1783	N/A	N/A	Phage terminase large subunit	N/A
structural_annotation	UHGV-1479464_19	PF04466,PF17288,MF_04145,TIGR01547,COG1783	N/A	N/A	N/A	N/A
KOfam	UHGV-1479464_20	K07474	111.4	1.5e-32	xtmA; phage terminase small subunit	N/A
PHROG	UHGV-1479464_20	phrog_51	103.7	1.4e-30	terminase small subunit	head and packaging
UniRef90	UHGV-1479464_20	UniRef90_UPI001D05F697	165.0	0	terminase small subunit	N/A
eggNOG-mapper	UHGV-1479464_20	697281.Mahau_0566	82.8	3.08e-18	Terminase Small Subunit	N/A
Pfam	UHGV-1479464_20	PF03592	N/A	N/A	Terminase small subunit	Terminase_2
COG	UHGV-1479464_20	COG3728	N/A	N/A	Phage terminase, small subunit	N/A
structural_annotation	UHGV-1479464_20	PF03592,COG3728	N/A	N/A	N/A	N/A
PHROG	UHGV-1479464_21	phrog_36	79.6	4.6e-23	transcriptional regulator	transcription regulation
UniRef90	UHGV-1479464_21	UniRef90_R7GSL5	66.6	0.0000000000254	Putative RNA polymerase sigma 28 subunit FliA/WhiG subfamily	N/A
eggNOG-mapper	UHGV-1479464_21	478749.BRYFOR_07600	60.8	0.00000000137	sigma factor activity	N/A
COG	UHGV-1479464_21	COG1191	N/A	N/A	DNA-directed RNA polymerase specialized sigma subunit	N/A
structural_annotation	UHGV-1479464_21	PF04545,MF_00674,NF009180,COG1342	N/A	N/A	N/A	N/A
Pfam	UHGV-1479464_24	PF09297	N/A	N/A	NADH pyrophosphatase zinc ribbon domain	zf-NADH-PPase
PHROG	UHGV-1479464_25	phrog_599	42.9	0.00000000001	Lar-like restriction alleviation protein	moron, auxiliary metabolic gene and host takeover
Pfam	UHGV-1479464_25	PF14354	N/A	N/A	Restriction alleviation protein Lar	Lar_restr_allev
NCBIFam	UHGV-1479464_25	TIGR03655.1	N/A	N/A	Lar family restriction alleviation protein	N/A
dbAPIS	UHGV-1479464_25	APIS033	N/A	N/A	Lar is functionally similar to RaI, is able to alleviate restriction and enhance modification by EcoKI. And the nucleotide sequences of their genes share 47% identity, indicating a common origin.	N/A
structural_annotation	UHGV-1479464_25	PF14354,TIGR03655,COG4888	N/A	N/A	N/A	N/A
KOfam	UHGV-1479464_27	K00558	217.6	0	DNMT1, dcm; DNA (cytosine-5)-methyltransferase 1 [EC:2.1.1.37]	N/A
PHROG	UHGV-1479464_27	phrog_116	258.6	0	DNA methyltransferase	other
UniRef90	UHGV-1479464_27	UniRef90_A0A350THX9	861.0	0	DNA (cytosine-5-)-methyltransferase	N/A
eggNOG-mapper	UHGV-1479464_27	1121334.KB911073_gene1852	736.0	0	Belongs to the class I-like SAM-binding methyltransferase superfamily. C5-methyltransferase family	N/A
PADLOC	UHGV-1479464_27	MTase_II_00164	99.8	3e-34	Type II methyltransferase	RM
Pfam	UHGV-1479464_27	PF00145	N/A	N/A	C-5 cytosine-specific DNA methylase	DNA_methylase
COG	UHGV-1479464_27	COG0270	N/A	N/A	DNA-cytosine methylase	N/A
structural_annotation	UHGV-1479464_27	PF00145,MF_00351,TIGR00675,COG0270	N/A	N/A	N/A	N/A
KOfam	UHGV-1479464_28	K07319	97.7	1e-28	yhdJ; adenine-specific DNA-methyltransferase [EC:2.1.1.72]	N/A
PHROG	UHGV-1479464_28	phrog_16	237.6	0	DNA helicase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1479464_28	UniRef90_A0A1Q6JHY3	1469.0	0	DNA methylase N-4	N/A
eggNOG-mapper	UHGV-1479464_28	1007096.BAGW01000031_gene119	1324.0	0	DEAD-like helicases superfamily	N/A
PADLOC	UHGV-1479464_28	MTase_II_00157	40.4	0.000000000000038	Type II methyltransferase	RM
Pfam	UHGV-1479464_28	PF00176	N/A	N/A	SNF2-related domain	SNF2-rel_dom
Pfam	UHGV-1479464_28	PF01555	N/A	N/A	DNA methylase	N6_N4_Mtase
COG	UHGV-1479464_28	COG0553	N/A	N/A	Superfamily II DNA or RNA helicase, SNF2 family	N/A
structural_annotation	UHGV-1479464_28	PF01555,PF16203,PF04851,MF_01821,MF_00472,NF041790,NF008572,COG0553,COG0863	N/A	N/A	N/A	N/A
KOfam	UHGV-1479464_30	K01160	64.1	3.8e-18	rusA; crossover junction endodeoxyribonuclease RusA [EC:3.1.21.10]	N/A
PHROG	UHGV-1479464_30	phrog_34	57.9	2.3e-16	RusA-like Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1479464_30	UniRef90_A0A2T0APF7	141.0	6.40001e-41	Endodeoxyribonuclease RusA	N/A
eggNOG-mapper	UHGV-1479464_30	561177.ANHYDRO_01396	119.0	3.16e-33	Endodeoxyribonuclease RusA	N/A
Pfam	UHGV-1479464_30	PF05866	N/A	N/A	Endodeoxyribonuclease RusA	RusA
COG	UHGV-1479464_30	COG4570	N/A	N/A	Holliday junction resolvase RusA (prophage-encoded endonuclease)	N/A
structural_annotation	UHGV-1479464_30	PF05866,NF007305,COG4570	N/A	N/A	N/A	N/A
KOfam	UHGV-1479464_31	K02314	276.7	0	dnaB; replicative DNA helicase [EC:5.6.2.3]	N/A
PHROG	UHGV-1479464_31	phrog_19	245.3	0	DnaB-like replicative helicase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1479464_31	UniRef90_A0A3D1XEC3	421.0	0	DNA helicase	N/A
eggNOG-mapper	UHGV-1479464_31	1408437.JNJN01000010_gene1232	190.0	0	Participates in initiation and elongation during chromosome replication	N/A
Pfam	UHGV-1479464_31	PF00772	N/A	N/A	DnaB-like helicase N terminal domain	DnaB
Pfam	UHGV-1479464_31	PF03796	N/A	N/A	DnaB-like helicase C terminal domain	DnaB_C
COG	UHGV-1479464_31	COG0305	N/A	N/A	Replicative DNA helicase	N/A
structural_annotation	UHGV-1479464_31	PF03796,PF00772,MF_04155,TIGR00665,COG0305	N/A	N/A	N/A	N/A
PHROG	UHGV-1479464_32	phrog_270	94.7	1.3e-27	replication initiation protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1479464_32	UniRef90_UPI000F093508	103.0	4.76e-23	phage replication protein	N/A
eggNOG-mapper	UHGV-1479464_32	1449126.JQKL01000046_gene2061	114.0	1.67e-27	N/A	N/A
structural_annotation	UHGV-1479464_32	PF01475,NF006999,COG0735	N/A	N/A	N/A	N/A
KOfam	UHGV-1479464_33	K03111	155.3	0	ssb; single-strand DNA-binding protein	N/A
PHROG	UHGV-1479464_33	phrog_44	151.3	4.2039e-45	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1479464_33	UniRef90_UPI001BB47F69	180.0	0	single-stranded DNA-binding protein	N/A
eggNOG-mapper	UHGV-1479464_33	1007096.BAGW01000023_gene151	177.0	0	Single-strand binding protein family	N/A
Pfam	UHGV-1479464_33	PF00436	N/A	N/A	Single-strand binding protein family	SSB
NCBIFam	UHGV-1479464_33	TIGR00621.2	N/A	N/A	single-stranded DNA-binding protein	N/A
COG	UHGV-1479464_33	COG0629	N/A	N/A	Single-stranded DNA-binding protein	N/A
HAMAP	UHGV-1479464_33	MF_00984	N/A	N/A	Single-stranded DNA-binding protein	N/A
structural_annotation	UHGV-1479464_33	PF00436,MF_00984,NF005241,COG0629	N/A	N/A	N/A	N/A
Pfam	UHGV-1479464_34	PF12728	N/A	N/A	Helix-turn-helix domain	HTH_17
structural_annotation	UHGV-1479464_34	PF12728,TIGR01764,COG3311	N/A	N/A	N/A	N/A
PHROG	UHGV-1479464_35	phrog_7566	90.4	1.2e-26	N/A	unknown function
UniRef90	UHGV-1479464_35	UniRef90_A0A8D9UHC0	155.0	0	Recombination enhancement function protein nuclease	N/A
eggNOG-mapper	UHGV-1479464_35	693746.OBV_24070	118.0	2.48e-33	N/A	N/A
PHROG	UHGV-1479464_36	phrog_374	57.9	2.1e-16	HNH endonuclease	DNA, RNA and nucleotide metabolism
eggNOG-mapper	UHGV-1479464_36	478749.BRYFOR_06178	53.1	0.00000605	AP2 domain protein	N/A
structural_annotation	UHGV-1479464_36	PF17375	N/A	N/A	N/A	N/A
PHROG	UHGV-1479464_37	phrog_72	49.1	0.000000000000037	NinB/ Orf homologous recombination mediator	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1479464_37	UniRef90_A0A8D9PDS2	244.0	0	NinB protein	N/A
eggNOG-mapper	UHGV-1479464_37	445972.ANACOL_01825	119.0	1.94e-31	N/A	N/A
structural_annotation	UHGV-1479464_37	PF05772	N/A	N/A	N/A	N/A
PHROG	UHGV-1479464_38	phrog_155	85.7	7.2e-25	Erf-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1479464_38	UniRef90_A0A1C6J8G0	249.0	0	ERF superfamily	N/A
eggNOG-mapper	UHGV-1479464_38	1268072.PSAB_05935	172.0	0	ERF superfamily	N/A
Pfam	UHGV-1479464_38	PF04404	N/A	N/A	ERF superfamily	ERF
structural_annotation	UHGV-1479464_38	PF04404,COG4712	N/A	N/A	N/A	N/A
PHROG	UHGV-1479464_44	phrog_4433	65.6	3.5e-19	N/A	unknown function
eggNOG-mapper	UHGV-1479464_44	394503.Ccel_3068	54.7	0.000000624	regulation of DNA-templated transcription, elongation	N/A
Pfam	UHGV-1479464_44	PF01391	N/A	N/A	Collagen triple helix repeat (20 copies)	Collagen
COG	UHGV-1479464_44	COG5164	N/A	N/A	Transcription elongation factor SPT5	N/A
structural_annotation	UHGV-1479464_44	NF007410	N/A	N/A	N/A	N/A

All viral genomes

ID	Representative?	Length (bps)	% GC Content	CheckV Completeness	geNomad Score
UHGV-1479464	Yes	30,033	56	68	1
UHGV-0124310	No	30,003	56	68	1
UHGV-1476366	No	29,893	56	68	1
UHGV-0196418	No	29,885	56	68	1