vOTU vOTU-103812

vOTU: vOTU-103812

Overview

Genome (FASTA) Annotation Track (GFF) Proteins (FASTA) Protein Annotation (TSV)

Cluster properties
vOTU ID	vOTU-103812
Number of genomes	2
Taxonomy (ICTV)	Bacteria → Firmicutes_A → Clostridia → Lachnospirales → Lachnospiraceae → Lachnospira
Taxonomy (UHGV)	vFAM-00003 → vSUBFAM-00117 → vGENUS-10499 → vOTU-103812
Host lineage	Bacteria → Firmicutes_A → Clostridia → Lachnospirales → Lachnospiraceae → Lachnospira
Host range breadth	Genus
Lifestyle	lytic (Evidence: BACPHLIP)

Representative genome
Genome ID	UHGV-0120759
Biosample ID	SAMEA3888925
Genome length (bp)	32,580 bps
CheckV completeness	85.75% (Medium-quality)
CDS count	44
CDS density	95.41%
tRNA count	0
Integrase	No
Viral confidence	Confident

Host assignment details
Assignment method	CRISPR
CRISPR-predicted host lineage	Bacteria → Firmicutes_A → Clostridia → Lachnospirales → Lachnospiraceae → Lachnospira	Total connections	943	Host agreement	98.09
PHIST-predicted host lineage	Bacteria → Firmicutes_A → Clostridia → Lachnospirales → Lachnospiraceae → Lachnospira	Total connections	65	Host agreement	98.46

Representative genome content

Select to view: Genome Viewer Functional Annotation

Genome view (completeness: 85.75)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
eggNOG-mapper	UHGV-0120759_1	515620.EUBELI_00515	56.6	0.00000000708	N/A	N/A
COG	UHGV-0120759_1	COG3546	N/A	N/A	Mn-containing catalase (includes spore coat protein CotJC)	N/A
KOfam	UHGV-0120759_5	K07273	125.6	6e-37	acm; lysozyme	N/A
PHROG	UHGV-0120759_5	phrog_291	98.1	1.2e-28	endolysin	lysis
UniRef90	UHGV-0120759_5	UniRef90_A0A356C4L5	676.0	0	LysM domain-containing protein	N/A
eggNOG-mapper	UHGV-0120759_5	515620.EUBELI_01316	169.0	0	Glycoside Hydrolase Family 25-like lysozyme endolysin	N/A
Pfam	UHGV-0120759_5	PF01183	N/A	N/A	Glycosyl hydrolases family 25	Glyco_hydro_25
Pfam	UHGV-0120759_5	PF01476	N/A	N/A	LysM domain	LysM
COG	UHGV-0120759_5	COG3757	N/A	N/A	Lyzozyme M1 (1,4-beta-N-acetylmuramidase), GH25 family	N/A
structural_annotation	UHGV-0120759_5	PF01183,NF007404,COG3757	N/A	N/A	N/A	N/A
PHROG	UHGV-0120759_6	phrog_199	54.2	0.000000000000002	holin	lysis
UniRef90	UHGV-0120759_6	UniRef90_A0A174PAV2	221.0	0	Phage-related holin (Lysis protein)	N/A
eggNOG-mapper	UHGV-0120759_6	411470.RUMGNA_02086	178.0	0	N/A	N/A
Pfam	UHGV-0120759_6	PF05105	N/A	N/A	Bacteriophage holin family	Phage_holin_4_1
NCBIFam	UHGV-0120759_6	TIGR01593.1	N/A	N/A	toxin secretion/phage lysis holin	N/A
COG	UHGV-0120759_6	COG4824	N/A	N/A	Phage-related holin (Lysis protein)	N/A
structural_annotation	UHGV-0120759_6	PF05105,TIGR01593,COG4824	N/A	N/A	N/A	N/A
PHROG	UHGV-0120759_8	phrog_1330	73.9	8.3e-30	tail protein	tail
eggNOG-mapper	UHGV-0120759_8	1437603.BMON_1128	130.0	4.85e-30	N/A	N/A
PHROG	UHGV-0120759_9	phrog_38044	85.3	0	N/A	unknown function
UniRef90	UHGV-0120759_9	UniRef90_A0A2V1JQ53	481.0	0	Ig-like domain-containing protein	N/A
eggNOG-mapper	UHGV-0120759_9	1410624.JNKK01000045_gene547	164.0	1.96182e-44	N/A	N/A
structural_annotation	UHGV-0120759_9	PF14874,NF038186	N/A	N/A	N/A	N/A
PHROG	UHGV-0120759_10	phrog_6616	143.4	1.60028e-42	tail protein	tail
UniRef90	UHGV-0120759_10	UniRef90_UPI001C10B551	209.0	0	tail fiber domain-containing protein	N/A
eggNOG-mapper	UHGV-0120759_10	552396.HMPREF0863_01647	151.0	4.83e-35	Phage minor structural protein	N/A
COG	UHGV-0120759_10	COG4926	N/A	N/A	Phage-related protein	N/A
PHROG	UHGV-0120759_11	phrog_1401	63.3	4e-18	N/A	unknown function
UniRef90	UHGV-0120759_11	UniRef90_UPI000A16CD19	60.8	0.00000000303	N/A	N/A
eggNOG-mapper	UHGV-0120759_11	1415775.U729_2617	65.1	0.0000000000113	N/A	N/A
structural_annotation	UHGV-0120759_11	PF07761	N/A	N/A	N/A	N/A
PHROG	UHGV-0120759_12	phrog_1194	82.4	4.9e-24	N/A	unknown function
eggNOG-mapper	UHGV-0120759_12	33035.JPJF01000093_gene2242	155.0	0	N/A	N/A
structural_annotation	UHGV-0120759_12	PF20458,TIGR02126,COG3499	N/A	N/A	N/A	N/A
PHROG	UHGV-0120759_13	phrog_1535	282.1	0	tail length tape measure protein	tail
UniRef90	UHGV-0120759_13	UniRef90_R6TDK7	341.0	0	Phage-related protein-like protein	N/A
eggNOG-mapper	UHGV-0120759_13	33035.JPJF01000093_gene2243	337.0	0	phage tail tape measure protein	N/A
COG	UHGV-0120759_13	COG3941	N/A	N/A	Phage tail tape-measure protein, controls tail length	N/A
structural_annotation	UHGV-0120759_13	PF20155,TIGR01760,COG3941	N/A	N/A	N/A	N/A
PHROG	UHGV-0120759_14	phrog_8355	121.2	1.9e-36	N/A	unknown function
UniRef90	UHGV-0120759_14	UniRef90_UPI0006BBA9AA	169.0	0	Gp15 family bacteriophage protein	N/A
eggNOG-mapper	UHGV-0120759_14	394503.Ccel_3036	125.0	1.33e-35	Bacteriophage Gp15 protein	N/A
Pfam	UHGV-0120759_14	PF06854	N/A	N/A	Bacteriophage Gp15 protein	Phage_Gp15
structural_annotation	UHGV-0120759_14	PF06854	N/A	N/A	N/A	N/A
PHROG	UHGV-0120759_15	phrog_8300	70.2	2.7e-20	N/A	unknown function
eggNOG-mapper	UHGV-0120759_15	1151292.QEW_2425	59.3	0.000000000613	N/A	N/A
structural_annotation	UHGV-0120759_15	PF06896	N/A	N/A	N/A	N/A
PHROG	UHGV-0120759_16	phrog_820	119.0	2.8e-35	major tail protein	tail
UniRef90	UHGV-0120759_16	UniRef90_T3DDR1	191.0	0	Phage major tail 2 family protein	N/A
eggNOG-mapper	UHGV-0120759_16	1151292.QEW_2426	191.0	0	N/A	N/A
structural_annotation	UHGV-0120759_16	PF06199,TIGR02126,COG5437	N/A	N/A	N/A	N/A
PHROG	UHGV-0120759_17	phrog_2595	94.6	9e-28	head-tail connector protein	connector
UniRef90	UHGV-0120759_17	UniRef90_UPI00164BAA81	136.0	1.26e-38	minor capsid protein	N/A
eggNOG-mapper	UHGV-0120759_17	742740.HMPREF9474_03510	121.0	1.19e-33	N/A	N/A
Pfam	UHGV-0120759_17	PF12691	N/A	N/A	Bacteriophage minor capsid protein	Minor_capsid_3
structural_annotation	UHGV-0120759_17	PF12691,COG5003	N/A	N/A	N/A	N/A
PHROG	UHGV-0120759_18	phrog_556	61.5	1.3e-17	minor head protein	head and packaging
eggNOG-mapper	UHGV-0120759_18	742740.HMPREF9474_03509	145.0	3.75548e-43	N/A	N/A
PHROG	UHGV-0120759_19	phrog_8710	133.4	7.1e-40	N/A	unknown function
eggNOG-mapper	UHGV-0120759_19	742740.HMPREF9474_03508	125.0	4.98e-36	N/A	N/A
structural_annotation	UHGV-0120759_19	PF10665,TIGR01563,COG5614	N/A	N/A	N/A	N/A
PHROG	UHGV-0120759_20	phrog_541	66.9	3.2e-19	head-tail adaptor	connector
eggNOG-mapper	UHGV-0120759_20	1304866.K413DRAFT_0783	146.0	7.84727e-44	N/A	N/A
PHROG	UHGV-0120759_21	phrog_422	264.5	0	major head protein	head and packaging
UniRef90	UHGV-0120759_21	UniRef90_A0A3D5M0U8	498.0	0	Phage capsid protein	N/A
eggNOG-mapper	UHGV-0120759_21	663278.Ethha_1589	372.0	0	N/A	N/A
structural_annotation	UHGV-0120759_21	PF19821,MF_04119,TIGR04387,COG4653	N/A	N/A	N/A	N/A
PHROG	UHGV-0120759_22	phrog_2303	138.8	4.00001e-41	head scaffolding protein	head and packaging
eggNOG-mapper	UHGV-0120759_22	483218.BACPEC_01156	134.0	5.1e-36	N/A	N/A
structural_annotation	UHGV-0120759_22	PF10788,MF_02110	N/A	N/A	N/A	N/A
PHROG	UHGV-0120759_24	phrog_581	239.2	0	minor head protein	head and packaging
UniRef90	UHGV-0120759_24	UniRef90_A0A8G1TMC4	740.0	0	Minor capsid protein	N/A
eggNOG-mapper	UHGV-0120759_24	33035.JPJF01000093_gene2255	712.0	0	N/A	N/A
Pfam	UHGV-0120759_24	PF06152	N/A	N/A	Phage minor capsid protein 2	Phage_min_cap2
Pfam	UHGV-0120759_24	PF03496	N/A	N/A	ADP-ribosyltransferase exoenzyme	ADPrib_exo_Tox
COG	UHGV-0120759_24	COG5585	N/A	N/A	Putative phage head morphogenesis protein, F of phage Mu or gp7 of SPP1	N/A
structural_annotation	UHGV-0120759_24	PF06152,PF03496,MF_04139,NF040688	N/A	N/A	N/A	N/A
PHROG	UHGV-0120759_25	phrog_533	286.0	0	portal protein	head and packaging
UniRef90	UHGV-0120759_25	UniRef90_A0A413YU90	934.0	0	Phage portal protein	N/A
eggNOG-mapper	UHGV-0120759_25	33035.JPJF01000093_gene2257	548.0	0	N/A	N/A
structural_annotation	UHGV-0120759_25	PF05133,MF_04120,TIGR01542,COG5511	N/A	N/A	N/A	N/A
KOfam	UHGV-0120759_26	K06909	95.5	7.4e-28	xtmB; phage terminase large subunit	N/A
PHROG	UHGV-0120759_26	phrog_2	71.0	2.6e-20	terminase large subunit	head and packaging
UniRef90	UHGV-0120759_26	UniRef90_A0A413YU24	948.0	0	Terminase	N/A
eggNOG-mapper	UHGV-0120759_26	1294142.CINTURNW_1023	516.0	0	Phage terminase, large subunit, PBSX family	N/A
Pfam	UHGV-0120759_26	PF03237	N/A	N/A	Terminase large subunit, T4likevirus-type, N-terminal	Terminase_6N
COG	UHGV-0120759_26	COG1783	N/A	N/A	Phage terminase large subunit	N/A
structural_annotation	UHGV-0120759_26	PF03237,PF17289,MF_04148,TIGR01547,COG1783	N/A	N/A	N/A	N/A
KOfam	UHGV-0120759_27	K07474	152.5	4.2039e-45	xtmA; phage terminase small subunit	N/A
PHROG	UHGV-0120759_27	phrog_51	161.9	0	terminase small subunit	head and packaging
UniRef90	UHGV-0120759_27	UniRef90_A0A413YU49	367.0	0	Terminase small subunit	N/A
eggNOG-mapper	UHGV-0120759_27	1499683.CCFF01000014_gene3916	148.0	1.98984e-42	Terminase small subunit	N/A
Pfam	UHGV-0120759_27	PF03592	N/A	N/A	Terminase small subunit	Terminase_2
COG	UHGV-0120759_27	COG3728	N/A	N/A	Phage terminase, small subunit	N/A
structural_annotation	UHGV-0120759_27	PF03592,COG3728	N/A	N/A	N/A	N/A
PHROG	UHGV-0120759_28	phrog_36	66.6	4.6e-19	transcriptional regulator	transcription regulation
eggNOG-mapper	UHGV-0120759_28	397290.C810_01391	105.0	5.83e-27	N/A	N/A
structural_annotation	UHGV-0120759_28	PF02996	N/A	N/A	N/A	N/A
PHROG	UHGV-0120759_29	phrog_625	62.2	3.3e-18	N/A	unknown function
UniRef90	UHGV-0120759_29	UniRef90_A0A413YU40	204.0	0	ASCH domain-containing protein	N/A
eggNOG-mapper	UHGV-0120759_29	397290.C810_01502	120.0	1.46e-33	N/A	N/A
structural_annotation	UHGV-0120759_29	PF12961,COG2028	N/A	N/A	N/A	N/A
PHROG	UHGV-0120759_30	phrog_20593	42.0	0.000000000011	N/A	unknown function
KOfam	UHGV-0120759_34	K00558	232.0	0	DNMT1, dcm; DNA (cytosine-5)-methyltransferase 1 [EC:2.1.1.37]	N/A
PHROG	UHGV-0120759_34	phrog_116	266.9	0	DNA methyltransferase	other
UniRef90	UHGV-0120759_34	UniRef90_A0A356C6K5	828.0	0	DNA (cytosine-5-)-methyltransferase	N/A
eggNOG-mapper	UHGV-0120759_34	1235800.C819_02255	650.0	0	C-5 cytosine-specific DNA methylase	N/A
PADLOC	UHGV-0120759_34	MTase_II_00020	115.5	1.3e-36	Type II methyltransferase	RM
Pfam	UHGV-0120759_34	PF00145	N/A	N/A	C-5 cytosine-specific DNA methylase	DNA_methylase
COG	UHGV-0120759_34	COG0270	N/A	N/A	DNA-cytosine methylase	N/A
structural_annotation	UHGV-0120759_34	PF00145,MF_00351,TIGR00675,COG0270	N/A	N/A	N/A	N/A
PHROG	UHGV-0120759_36	phrog_19658	47.1	0.00000000000027	replication initiation protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0120759_36	UniRef90_E4QBK3	83.6	7.97e-18	Putative transcriptional regulator, GntR family	N/A
eggNOG-mapper	UHGV-0120759_36	796940.HMPREF9628_00167	142.0	2.68e-39	N/A	N/A
COG	UHGV-0120759_36	COG3935	N/A	N/A	DNA replication protein DnaD	N/A
structural_annotation	UHGV-0120759_36	PF09202,MF_01819,TIGR01610,COG1959	N/A	N/A	N/A	N/A
KOfam	UHGV-0120759_37	K01160	49.7	0.0000000000001	rusA; crossover junction endodeoxyribonuclease RusA [EC:3.1.21.10]	N/A
PHROG	UHGV-0120759_37	phrog_1682	81.6	1.1e-23	RusA-like Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0120759_37	UniRef90_A0A6N7WNE3	187.0	0	RusA family crossover junction endodeoxyribonuclease	N/A
eggNOG-mapper	UHGV-0120759_37	1304866.K413DRAFT_3018	130.0	2.79e-37	Endonuclease that resolves Holliday junction intermediates made during homologous genetic recombination and DNA repair. Exhibits sequence and structure-selective cleavage of four-way DNA junctions, where it introduces symmetrical nicks in two strands of the same polarity at the 5' side of dinucleotides. Corrects the defects in genetic recombination and DNA repair associated with inactivation of ruvAB or ruvC	N/A
COG	UHGV-0120759_37	COG4570	N/A	N/A	Holliday junction resolvase RusA (prophage-encoded endonuclease)	N/A
structural_annotation	UHGV-0120759_37	PF19595,NF007305,COG4570	N/A	N/A	N/A	N/A
PHROG	UHGV-0120759_38	phrog_7566	47.2	0.00000000000018	N/A	unknown function
UniRef90	UHGV-0120759_38	UniRef90_A0A373CFM5	109.0	4.78e-29	ClpX-type ZB domain-containing protein	N/A
eggNOG-mapper	UHGV-0120759_38	742733.HMPREF9469_01847	108.0	1.62e-29	N/A	N/A
PHROG	UHGV-0120759_39	phrog_1227	255.9	0	exonuclease	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0120759_39	UniRef90_A0A356C6D2	547.0	0	N/A	N/A
eggNOG-mapper	UHGV-0120759_39	1304866.K413DRAFT_3016	401.0	0	N/A	N/A
Pfam	UHGV-0120759_39	PF12684	N/A	N/A	N/A	DUF3799
COG	UHGV-0120759_39	COG1074	N/A	N/A	3'-5' helicase subunit RecB of the DNA repair enzyme RecBCD (exonuclease V)	N/A
structural_annotation	UHGV-0120759_39	PF12684,TIGR01896,COG4343	N/A	N/A	N/A	N/A
PHROG	UHGV-0120759_40	phrog_3657	343.9	0	N/A	unknown function
UniRef90	UHGV-0120759_40	UniRef90_UPI001DC4E782	283.0	0	PD-(D/E)XK nuclease-like domain-containing protein	N/A
eggNOG-mapper	UHGV-0120759_40	1304866.K413DRAFT_3015	330.0	0	N/A	N/A
PHROG	UHGV-0120759_41	phrog_1499	271.3	0	N/A	unknown function
UniRef90	UHGV-0120759_41	UniRef90_A0A356C6H9	898.0	0	AAA_23 domain-containing protein	N/A
eggNOG-mapper	UHGV-0120759_41	742733.HMPREF9469_01850	610.0	0	DNA recombination	N/A
Pfam	UHGV-0120759_41	PF13476	N/A	N/A	AAA domain	AAA_23
COG	UHGV-0120759_41	COG0497	N/A	N/A	DNA repair ATPase RecN	N/A
structural_annotation	UHGV-0120759_41	PF11398,MF_00365,NF008121,COG0497	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0120759_44	NF040556	N/A	N/A	N/A	N/A

All viral genomes

ID	Representative?	Length (bps)	% GC Content	CheckV Completeness	geNomad Score
UHGV-0120759	Yes	32,580	39	86	1
UHGV-0256453	No	32,071	39	84	1