vOTU vOTU-104123

vOTU: vOTU-104123

Overview

Genome (FASTA) Annotation Track (GFF) Proteins (FASTA) Protein Annotation (TSV)

Cluster properties
vOTU ID	vOTU-104123
Number of genomes	1
Taxonomy (ICTV)
Taxonomy (UHGV)	vFAM-00004 → vSUBFAM-00005 → vGENUS-00154 → vOTU-104123
Host lineage	Bacteria → Firmicutes_A → Clostridia → Oscillospirales → Oscillospiraceae → ER4 → ER4 sp000765235
Host range breadth	Species
Lifestyle	lytic (Evidence: BACPHLIP)

Representative genome
Genome ID	UHGV-0039980
Biosample ID	SAMEA4969180
Genome length (bp)	29,605 bps
CheckV completeness	70.60% (Medium-quality)
CDS count	47
CDS density	94.08%
tRNA count	1
Integrase	No
Viral confidence	Confident

Host assignment details
Assignment method	CRISPR
CRISPR-predicted host lineage	Bacteria → Firmicutes_A → Clostridia → Oscillospirales → Oscillospiraceae → ER4 → ER4 sp000765235	Total connections	251	Host agreement	74.5
PHIST-predicted host lineage		Total connections		Host agreement

Representative genome content

Select to view: Genome Viewer Functional Annotation

Genome view (completeness: 70.6)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
PHROG	UHGV-0039980_1	phrog_424	82.7	3.7e-24	phosphoadenosine phosphosulfate reductase	moron, auxiliary metabolic gene and host takeover
UniRef90	UHGV-0039980_1	UniRef90_UPI001D097961	280.0	0	phosphoadenosine phosphosulfate reductase family protein	N/A
eggNOG-mapper	UHGV-0039980_1	665956.HMPREF1032_00140	206.0	0	Phosphoadenosine phosphosulfate reductase family	N/A
Pfam	UHGV-0039980_1	PF01507	N/A	N/A	Phosphoadenosine phosphosulfate reductase family	PAPS_reduct
COG	UHGV-0039980_1	COG0175	N/A	N/A	3'-phosphoadenosine 5'-phosphosulfate sulfotransferase (PAPS reductase)/FAD synthetase or related enzyme	N/A
structural_annotation	UHGV-0039980_1	PF01507,MF_00064,TIGR02039	N/A	N/A	N/A	N/A
PHROG	UHGV-0039980_2	phrog_757	185.8	0	DNA methyltransferase	other
UniRef90	UHGV-0039980_2	UniRef90_UPI001A9B5584	430.0	0	DNA cytosine methyltransferase	N/A
eggNOG-mapper	UHGV-0039980_2	748224.HMPREF9436_03069	301.0	0	DNA (cytosine-5-)-methyltransferase activity	N/A
COG	UHGV-0039980_2	COG0270	N/A	N/A	DNA-cytosine methylase	N/A
structural_annotation	UHGV-0039980_2	PF00145,MF_01872,TIGR00675,COG0270	N/A	N/A	N/A	N/A
PHROG	UHGV-0039980_3	phrog_27610	45.9	0.0000000000006	N/A	unknown function
UniRef90	UHGV-0039980_4	UniRef90_A0A098GES5	85.1	1.47e-19	Putative phage associated protein	N/A
structural_annotation	UHGV-0039980_4	PF01423,MF_00257,NF001963,COG1958	N/A	N/A	N/A	N/A
PHROG	UHGV-0039980_6	phrog_38832	52.2	1.4e-16	N/A	unknown function
eggNOG-mapper	UHGV-0039980_6	1232443.BAIA02000078_gene48	122.0	2.57e-34	N/A	N/A
structural_annotation	UHGV-0039980_6	PF11717,TIGR02450	N/A	N/A	N/A	N/A
PHROG	UHGV-0039980_7	phrog_3136	133.3	7.29999e-40	N/A	unknown function
UniRef90	UHGV-0039980_7	UniRef90_A0A3D0HBD2	166.0	0	ASCH domain-containing protein	N/A
eggNOG-mapper	UHGV-0039980_7	97139.C824_00742	74.7	0.0000000000000199	The globular domain of the protein is located near the polypeptide exit tunnel on the outside of the subunit, while an extended beta-hairpin is found that lines the wall of the exit tunnel in the center of the 70S ribosome	N/A
COG	UHGV-0039980_7	COG4933	N/A	N/A	Predicted transcriptional regulator, contains an HTH and PUA-like domains	N/A
structural_annotation	UHGV-0039980_7	PF08819,MF_00684,NF008917,COG4933	N/A	N/A	N/A	N/A
UniRef90	UHGV-0039980_8	UniRef90_UPI00082EBC63	85.5	3.63e-19	Lar family restriction alleviation protein	N/A
eggNOG-mapper	UHGV-0039980_11	552398.HMPREF0866_03131	49.7	0.00000027	N/A	N/A
PHROG	UHGV-0039980_12	phrog_9467	206.2	0	N/A	unknown function
UniRef90	UHGV-0039980_12	UniRef90_UPI0015B3EAA7	142.0	2.16e-38	Gp49 family protein	N/A
eggNOG-mapper	UHGV-0039980_12	1519439.JPJG01000060_gene1880	289.0	0	N/A	N/A
Pfam	UHGV-0039980_12	PF13876	N/A	N/A	N/A	Phage_gp49_66
dbAPIS	UHGV-0039980_12	APIS043	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0039980_12	PF13876,PF14359,COG3613	N/A	N/A	N/A	N/A
UniRef90	UHGV-0039980_14	UniRef90_UPI0009523D83	166.0	0	helix-turn-helix domain containing protein	N/A
eggNOG-mapper	UHGV-0039980_14	1226322.HMPREF1545_00042	159.0	0	N/A	N/A
structural_annotation	UHGV-0039980_14	PF13542	N/A	N/A	N/A	N/A
KOfam	UHGV-0039980_15	K06909	118.4	7.5e-35	xtmB; phage terminase large subunit	N/A
PHROG	UHGV-0039980_15	phrog_2	119.9	3.5e-35	terminase large subunit	head and packaging
UniRef90	UHGV-0039980_15	UniRef90_A0A3D3Y0N9	422.0	0	PBSX family phage terminase large subunit	N/A
eggNOG-mapper	UHGV-0039980_15	1226322.HMPREF1545_00043	400.0	0	Phage terminase large subunit	N/A
Pfam	UHGV-0039980_15	PF03237	N/A	N/A	Terminase large subunit, T4likevirus-type, N-terminal	Terminase_6N
NCBIFam	UHGV-0039980_15	TIGR01547.1	N/A	N/A	PBSX family phage terminase large subunit	N/A
COG	UHGV-0039980_15	COG1783	N/A	N/A	Phage terminase large subunit	N/A
structural_annotation	UHGV-0039980_15	PF04466,PF20454,MF_04148,TIGR01547,COG1783	N/A	N/A	N/A	N/A
PHROG	UHGV-0039980_16	phrog_533	382.2	0	portal protein	head and packaging
UniRef90	UHGV-0039980_16	UniRef90_A0A2U1BEK0	593.0	0	A118 family predicted phage portal protein	N/A
eggNOG-mapper	UHGV-0039980_16	1226322.HMPREF1545_00044	551.0	0	N/A	N/A
Pfam	UHGV-0039980_16	PF05133	N/A	N/A	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
structural_annotation	UHGV-0039980_16	PF05133,MF_04120,TIGR01542,COG5511	N/A	N/A	N/A	N/A
PHROG	UHGV-0039980_17	phrog_581	283.8	0	minor head protein	head and packaging
UniRef90	UHGV-0039980_17	UniRef90_UPI001D080D49	574.0	0	phage minor capsid protein	N/A
eggNOG-mapper	UHGV-0039980_17	1226322.HMPREF1545_00046	371.0	0	Phage minor capsid protein 2	N/A
Pfam	UHGV-0039980_17	PF06152	N/A	N/A	Phage minor capsid protein 2	Phage_min_cap2
COG	UHGV-0039980_17	COG2369	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0039980_17	PF06152	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0039980_18	PF18152	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0039980_19	PF06810	N/A	N/A	N/A	N/A
PHROG	UHGV-0039980_20	phrog_544	181.2	0	major head protein	head and packaging
UniRef90	UHGV-0039980_20	UniRef90_A0A810PZM2	708.0	0	S-l_SbsC_C domain-containing protein	N/A
eggNOG-mapper	UHGV-0039980_20	1347392.CCEZ01000005_gene1236	279.0	0	N/A	N/A
Pfam	UHGV-0039980_20	PF18316	N/A	N/A	S-layer protein SbsC C-terminal domain	S-l_SbsC_C
structural_annotation	UHGV-0039980_20	PF03864,PF18316,MF_04119,TIGR04387,COG4653	N/A	N/A	N/A	N/A
PHROG	UHGV-0039980_21	phrog_541	113.4	1.1e-33	head-tail adaptor	connector
eggNOG-mapper	UHGV-0039980_21	642492.Clole_0822	63.9	0.0000000000434	N/A	N/A
PHROG	UHGV-0039980_22	phrog_3366	87.7	1.3e-25	N/A	unknown function
eggNOG-mapper	UHGV-0039980_22	1226322.HMPREF1545_00053	150.0	9.80909e-45	N/A	N/A
structural_annotation	UHGV-0039980_22	PF20536,TIGR01563	N/A	N/A	N/A	N/A
PHROG	UHGV-0039980_23	phrog_556	69.4	4.7e-20	minor head protein	head and packaging
UniRef90	UHGV-0039980_23	UniRef90_UPI00195E1497	183.0	0	minor capsid protein	N/A
eggNOG-mapper	UHGV-0039980_23	1226322.HMPREF1545_00054	147.0	1.34525e-43	Minor capsid protein	N/A
Pfam	UHGV-0039980_23	PF11114	N/A	N/A	Minor capsid protein	Minor_capsid_2
structural_annotation	UHGV-0039980_23	PF11114	N/A	N/A	N/A	N/A
PHROG	UHGV-0039980_24	phrog_3266	63.2	4e-18	tail completion	connector
eggNOG-mapper	UHGV-0039980_24	1232443.BAIA02000078_gene24	190.0	0	N/A	N/A
structural_annotation	UHGV-0039980_24	PF12691	N/A	N/A	N/A	N/A
PHROG	UHGV-0039980_25	phrog_3099	93.7	2.1e-27	N/A	unknown function
eggNOG-mapper	UHGV-0039980_25	1232443.BAIA02000078_gene23	238.0	0	N/A	N/A
structural_annotation	UHGV-0039980_25	TIGR02126	N/A	N/A	N/A	N/A
PHROG	UHGV-0039980_26	phrog_11299	85.3	7.8e-25	N/A	unknown function
eggNOG-mapper	UHGV-0039980_26	693746.OBV_18160	106.0	1.73e-27	N/A	N/A
structural_annotation	UHGV-0039980_26	PF10666	N/A	N/A	N/A	N/A
PHROG	UHGV-0039980_27	phrog_706	125.7	3.2e-37	N/A	unknown function
UniRef90	UHGV-0039980_27	UniRef90_UPI000682A80B	247.0	0	Gp15 family bacteriophage protein	N/A
eggNOG-mapper	UHGV-0039980_27	693746.OBV_18170	239.0	0	Bacteriophage Gp15 protein	N/A
Pfam	UHGV-0039980_27	PF06854	N/A	N/A	Bacteriophage Gp15 protein	Phage_Gp15
structural_annotation	UHGV-0039980_27	PF06854	N/A	N/A	N/A	N/A
PHROG	UHGV-0039980_28	phrog_806	75.0	8.4e-22	N/A	unknown function
UniRef90	UHGV-0039980_28	UniRef90_UPI00137B5163	206.0	0	N/A	N/A
eggNOG-mapper	UHGV-0039980_28	397290.C810_05150	140.0	1.35e-39	N/A	N/A
Pfam	UHGV-0039980_28	PF11611	N/A	N/A	N/A	DUF4352
structural_annotation	UHGV-0039980_28	PF11611,MF_00791,NF003967,COG2967	N/A	N/A	N/A	N/A
PHROG	UHGV-0039980_29	phrog_1535	97.6	0	tail length tape measure protein	tail
UniRef90	UHGV-0039980_29	UniRef90_A0A810PX76	155.0	3.07e-36	Phage tail tape measure protein	N/A
eggNOG-mapper	UHGV-0039980_29	1235797.C816_04182	276.0	0	SLT domain	N/A
COG	UHGV-0039980_29	COG1511	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0039980_29	PF05546,TIGR02559	N/A	N/A	N/A	N/A
PHROG	UHGV-0039980_30	phrog_1194	77.4	1.6e-22	N/A	unknown function
eggNOG-mapper	UHGV-0039980_30	1232443.BAIA02000078_gene17	120.0	7.82e-34	N/A	N/A
structural_annotation	UHGV-0039980_30	PF20458,TIGR02126,COG5437	N/A	N/A	N/A	N/A
PHROG	UHGV-0039980_31	phrog_32308	44.9	0.00000000000019	N/A	unknown function
UniRef90	UHGV-0039980_31	UniRef90_A0A2Z4QA17	270.0	0	KID repeat-containing protein	N/A
eggNOG-mapper	UHGV-0039980_31	1235797.C816_04180	313.0	0	N/A	N/A
structural_annotation	UHGV-0039980_31	PF21683,TIGR02126,COG4379	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0039980_32	1235797.C816_04179	211.0	0	Chaperone of endosialidase	N/A
structural_annotation	UHGV-0039980_33	PF20942,NF041894,COG5456	N/A	N/A	N/A	N/A
PHROG	UHGV-0039980_35	phrog_3279	40.8	0.000000000015	tail fiber protein	tail
eggNOG-mapper	UHGV-0039980_35	1519439.JPJG01000060_gene1892	219.0	0	Collagen triple helix repeat (20 copies)	N/A
COG	UHGV-0039980_35	COG3064	N/A	N/A	Membrane protein TolA involved in colicin uptake	N/A
PHROG	UHGV-0039980_36	phrog_10993	264.2	0	Hoc-like head decoration	head and packaging
UniRef90	UHGV-0039980_36	UniRef90_A0A3D4D8F0	347.0	0	N/A	N/A
eggNOG-mapper	UHGV-0039980_36	1519439.JPJG01000060_gene1894	298.0	0	N/A	N/A
Pfam	UHGV-0039980_36	PF19789	N/A	N/A	N/A	DUF6273
COG	UHGV-0039980_36	COG3827	N/A	N/A	Cell pole-organizing protein PopZ	N/A
structural_annotation	UHGV-0039980_36	PF19789,PF18707,NF041825,COG3330	N/A	N/A	N/A	N/A
PHROG	UHGV-0039980_37	phrog_27545	149.4	1.12104e-44	N/A	unknown function
UniRef90	UHGV-0039980_37	UniRef90_A0A2V2GQB6	173.0	0	Chitin-binding type-3 domain-containing protein	N/A
eggNOG-mapper	UHGV-0039980_37	1519439.JPJG01000060_gene1895	335.0	0	N/A	N/A
Pfam	UHGV-0039980_37	PF02839	N/A	N/A	Carbohydrate-binding module family 5/12	CBM_5_12
structural_annotation	UHGV-0039980_37	PF16170	N/A	N/A	N/A	N/A
PHROG	UHGV-0039980_38	phrog_937	45.7	0.0000000000012	hemolysin	other
eggNOG-mapper	UHGV-0039980_38	1519439.JPJG01000023_gene533	84.0	7.72e-20	N/A	N/A
PHROG	UHGV-0039980_40	phrog_13256	64.4	1.1e-18	N/A	unknown function
eggNOG-mapper	UHGV-0039980_40	1226322.HMPREF1545_00132	74.7	7.65e-17	N/A	N/A
KOfam	UHGV-0039980_41	K17733	82.6	5.4e-24	cwlK; peptidoglycan LD-endopeptidase CwlK [EC:3.4.-.-]	N/A
PHROG	UHGV-0039980_41	phrog_6523	65.9	7.7e-19	endolysin	lysis
UniRef90	UHGV-0039980_41	UniRef90_R5RXG6	196.0	0	Serine-type D-Ala-D-Ala carboxypeptidase	N/A
eggNOG-mapper	UHGV-0039980_41	1519439.JPJG01000023_gene536	194.0	0	D-alanyl-D-alanine carboxypeptidase	N/A
Pfam	UHGV-0039980_41	PF13539	N/A	N/A	D-alanyl-D-alanine carboxypeptidase	Peptidase_M15_4
COG	UHGV-0039980_41	COG1876	N/A	N/A	LD-carboxypeptidase LdcB, LAS superfamily	N/A
structural_annotation	UHGV-0039980_41	PF02557,MF_01924,NF000380,COG1876	N/A	N/A	N/A	N/A
UniRef90	UHGV-0039980_42	UniRef90_A0A6N3FXW7	129.0	2.38e-37	Helix-turn-helix	N/A
eggNOG-mapper	UHGV-0039980_42	742738.HMPREF9460_04059	74.7	9.38e-16	Helix-turn-helix XRE-family like proteins	N/A
Pfam	UHGV-0039980_42	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
COG	UHGV-0039980_42	COG1396	N/A	N/A	Transcriptional regulator, contains XRE-family HTH domain	N/A
structural_annotation	UHGV-0039980_42	PF01381,NF041951,COG1396	N/A	N/A	N/A	N/A
PHROG	UHGV-0039980_45	phrog_3754	112.1	4.2e-33	N/A	unknown function
eggNOG-mapper	UHGV-0039980_45	1226322.HMPREF1545_00073	166.0	0	N/A	N/A
PHROG	UHGV-0039980_46	phrog_21718	105.1	6e-31	N/A	unknown function
eggNOG-mapper	UHGV-0039980_46	397290.C810_05210	70.1	0.0000000000005	N/A	N/A
PHROG	UHGV-0039980_47	phrog_22984	80.6	1.5e-23	N/A	unknown function

All viral genomes

ID	Representative?	Length (bps)	% GC Content	CheckV Completeness	geNomad Score
UHGV-0039980	Yes	29,605	54	71	1