vOTU vOTU-104143

vOTU: vOTU-104143

Overview

Genome (FASTA) Annotation Track (GFF) Proteins (FASTA) Protein Annotation (TSV)

Cluster properties
vOTU ID	vOTU-104143
Number of genomes	1
Taxonomy (ICTV)
Taxonomy (UHGV)	vFAM-00004 → vSUBFAM-00013 → vOTU-104143
Host lineage	Bacteria → Firmicutes_A → Clostridia → Oscillospirales → Ruminococcaceae → Faecalibacterium
Host range breadth	Genus
Lifestyle	temperate (Evidence: BACPHLIP)

Representative genome
Genome ID	UHGV-0026064
Biosample ID	SAMEA4766217
Genome length (bp)	37,352 bps
CheckV completeness	88.49% (Medium-quality)
CDS count	63
CDS density	89.91%
tRNA count	3
Integrase	No
Viral confidence	Confident

Host assignment details
Assignment method	CRISPR
CRISPR-predicted host lineage	Bacteria → Firmicutes_A → Clostridia → Oscillospirales → Ruminococcaceae → Faecalibacterium	Total connections	835	Host agreement	96.89
PHIST-predicted host lineage		Total connections		Host agreement

Representative genome content

Select to view: Genome Viewer Functional Annotation

Genome view (completeness: 88.49)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
PHROG	UHGV-0026064_1	phrog_606	91.3	9.5e-27	terminase small subunit	head and packaging
UniRef90	UHGV-0026064_1	UniRef90_UPI001D0F42E6	184.0	0	DNA-packaging protein	N/A
eggNOG-mapper	UHGV-0026064_1	397290.C810_05185	151.0	2.94273e-44	DNA-packaging protein gp3	N/A
Pfam	UHGV-0026064_1	PF16677	N/A	N/A	DNA-packaging protein gp3	GP3_package
KOfam	UHGV-0026064_2	K06909	136.1	3.4e-40	xtmB; phage terminase large subunit	N/A
PHROG	UHGV-0026064_2	phrog_10250	171.3	0	N/A	unknown function
UniRef90	UHGV-0026064_2	UniRef90_A0A844D8I4	589.0	0	PBSX family phage terminase large subunit	N/A
eggNOG-mapper	UHGV-0026064_2	1226322.HMPREF1545_00043	399.0	0	Phage terminase large subunit	N/A
Pfam	UHGV-0026064_2	PF03237	N/A	N/A	Terminase large subunit, T4likevirus-type, N-terminal	Terminase_6N
Pfam	UHGV-0026064_2	PF17288	N/A	N/A	Terminase RNAseH like domain	Terminase_3C
NCBIFam	UHGV-0026064_2	TIGR01547.1	N/A	N/A	PBSX family phage terminase large subunit	N/A
COG	UHGV-0026064_2	COG1783	N/A	N/A	Phage terminase large subunit	N/A
structural_annotation	UHGV-0026064_2	PF04466,PF17289,MF_04148,TIGR01547,COG1783	N/A	N/A	N/A	N/A
PHROG	UHGV-0026064_3	phrog_64	124.7	3.1e-37	portal protein	head and packaging
UniRef90	UHGV-0026064_3	UniRef90_A0A6N7TNT3	870.0	0	Phage portal protein	N/A
eggNOG-mapper	UHGV-0026064_3	642492.Clole_2764	79.0	0.000000000000734	phage portal protein, SPP1	N/A
Pfam	UHGV-0026064_3	PF05133	N/A	N/A	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
structural_annotation	UHGV-0026064_3	PF05133,MF_04120,TIGR01538,COG3567	N/A	N/A	N/A	N/A
PHROG	UHGV-0026064_5	phrog_2468	81.3	7.4e-24	head morphogenesis	head and packaging
UniRef90	UHGV-0026064_5	UniRef90_A0A6N7TLR7	622.0	0	Phage_Mu_F domain-containing protein	N/A
eggNOG-mapper	UHGV-0026064_5	1504822.CCNO01000013_gene286	111.0	6.25e-24	cell adhesion	N/A
Pfam	UHGV-0026064_5	PF04233	N/A	N/A	Phage Mu protein F like protein	Phage_Mu_F
COG	UHGV-0026064_5	COG2369	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0026064_5	PF04233,TIGR01641,COG2369	N/A	N/A	N/A	N/A
PHROG	UHGV-0026064_7	phrog_8680	204.7	0	N/A	unknown function
UniRef90	UHGV-0026064_7	UniRef90_A0A6N7TNE8	453.0	0	N/A	N/A
eggNOG-mapper	UHGV-0026064_7	1423790.BN53_04265	177.0	0	Belongs to the N(4) N(6)-methyltransferase family	N/A
Pfam	UHGV-0026064_7	PF14386	N/A	N/A	N/A	DUF4417
COG	UHGV-0026064_7	COG1475	N/A	N/A	Chromosome segregation protein Spo0J, contains ParB-like nuclease domain	N/A
structural_annotation	UHGV-0026064_7	PF14386	N/A	N/A	N/A	N/A
UniRef90	UHGV-0026064_9	UniRef90_A0A6N7TNP6	271.0	0	HK97 gp10 family phage protein	N/A
eggNOG-mapper	UHGV-0026064_9	268407.PWYN_03010	68.9	0.000000000000827	Bacteriophage HK97-gp10, putative tail-component	N/A
Pfam	UHGV-0026064_9	PF04883	N/A	N/A	Bacteriophage HK97-gp10, putative tail-component	HK97-gp10_like
structural_annotation	UHGV-0026064_9	PF20039,TIGR01725,COG5005	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0026064_12	PF06810	N/A	N/A	N/A	N/A
PHROG	UHGV-0026064_13	phrog_544	155.6	0	major head protein	head and packaging
UniRef90	UHGV-0026064_13	UniRef90_R0BKA1	456.0	0	S-l_SbsC_C domain-containing protein	N/A
eggNOG-mapper	UHGV-0026064_13	476272.RUMHYD_01776	338.0	0	N/A	N/A
structural_annotation	UHGV-0026064_13	PF03864,MF_04119,TIGR04387,COG4834	N/A	N/A	N/A	N/A
PHROG	UHGV-0026064_15	phrog_17977	42.7	0.0000000000074	N/A	unknown function
UniRef90	UHGV-0026064_15	UniRef90_A0A844DHJ8	119.0	2.31e-32	Phage head closure protein	N/A
structural_annotation	UHGV-0026064_15	PF05521,TIGR01563,COG5614	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0026064_16	PF13554	N/A	N/A	N/A	N/A
PHROG	UHGV-0026064_17	phrog_885	73.7	2.1e-21	major tail protein	tail
eggNOG-mapper	UHGV-0026064_17	1111121.HMPREF1247_0789	160.0	0	N/A	N/A
structural_annotation	UHGV-0026064_17	PF06488,TIGR01603,COG5437	N/A	N/A	N/A	N/A
PHROG	UHGV-0026064_20	phrog_9959	107.5	7.3e-32	tail length tape measure protein	tail
UniRef90	UHGV-0026064_20	UniRef90_A0A6N7TLD3	1120.0	0	Tape measure protein	N/A
eggNOG-mapper	UHGV-0026064_20	1492737.FEM08_12070	139.0	1.49e-31	tape measure	N/A
Pfam	UHGV-0026064_20	PF20155	N/A	N/A	Tape measure protein	TMP_3
NCBIFam	UHGV-0026064_20	TIGR02675.1	N/A	N/A	tape measure protein	N/A
COG	UHGV-0026064_20	COG3941	N/A	N/A	Phage tail tape-measure protein, controls tail length	N/A
structural_annotation	UHGV-0026064_20	PF20155,TIGR01760,COG3941	N/A	N/A	N/A	N/A
UniRef90	UHGV-0026064_21	UniRef90_A0A417QGC1	117.0	2.24e-28	MtfA protein	N/A
eggNOG-mapper	UHGV-0026064_21	411490.ANACAC_00709	104.0	1.99e-24	phage tail	N/A
COG	UHGV-0026064_21	COG4722	N/A	N/A	Phage-related protein YomH	N/A
structural_annotation	UHGV-0026064_21	PF05709,PF02408,TIGR01633,COG4722	N/A	N/A	N/A	N/A
PHROG	UHGV-0026064_22	phrog_3558	187.4	0	tail protein	tail
UniRef90	UHGV-0026064_22	UniRef90_A0A844DGT5	160.0	8.35e-39	Prophage_tail domain-containing protein	N/A
eggNOG-mapper	UHGV-0026064_22	411460.RUMTOR_00484	134.0	2.57e-30	Prophage endopeptidase tail	N/A
Pfam	UHGV-0026064_22	PF06605	N/A	N/A	Prophage endopeptidase tail	Prophage_tail
NCBIFam	UHGV-0026064_22	TIGR01665.1	N/A	N/A	phage tail spike protein	N/A
COG	UHGV-0026064_22	COG4926	N/A	N/A	Phage-related protein	N/A
structural_annotation	UHGV-0026064_22	PF14594,TIGR01665,COG4379	N/A	N/A	N/A	N/A
PHROG	UHGV-0026064_23	phrog_9534	48.4	0.0000000000001	head protein	head and packaging
eggNOG-mapper	UHGV-0026064_23	748224.HMPREF9436_01407	251.0	0	COG NOG18825 non supervised orthologous group	N/A
PHROG	UHGV-0026064_25	phrog_1382	49.4	0.000000000000034	N/A	unknown function
eggNOG-mapper	UHGV-0026064_25	411468.CLOSCI_00272	46.2	0.00000328	N/A	N/A
KOfam	UHGV-0026064_26	K07273	168.7	0	acm; lysozyme	N/A
PHROG	UHGV-0026064_26	phrog_291	137.5	1.10001e-40	endolysin	lysis
UniRef90	UHGV-0026064_26	UniRef90_E2ZES5	316.0	0	Glycosyl hydrolase family 25	N/A
eggNOG-mapper	UHGV-0026064_26	748224.HMPREF9436_00154	316.0	0	hydrolase, family 25	N/A
Pfam	UHGV-0026064_26	PF01183	N/A	N/A	Glycosyl hydrolases family 25	Glyco_hydro_25
COG	UHGV-0026064_26	COG3757	N/A	N/A	Lyzozyme M1 (1,4-beta-N-acetylmuramidase), GH25 family	N/A
structural_annotation	UHGV-0026064_26	PF01183,COG3757	N/A	N/A	N/A	N/A
PHROG	UHGV-0026064_28	phrog_15303	120.1	8.6e-36	N/A	unknown function
Pfam	UHGV-0026064_28	PF09682	N/A	N/A	Bacteriophage holin of superfamily 6 (Holin_LLH)	Phage_holin_6_1
PHROG	UHGV-0026064_30	phrog_366	46.4	0.00000000000044	tail fiber protein	tail
UniRef90	UHGV-0026064_30	UniRef90_UPI0018835F0C	573.0	0	collagen-like protein	N/A
eggNOG-mapper	UHGV-0026064_30	411483.FAEPRAA2165_00757	167.0	1.82169e-44	N/A	N/A
Pfam	UHGV-0026064_30	PF01391	N/A	N/A	Collagen triple helix repeat (20 copies)	Collagen
structural_annotation	UHGV-0026064_30	PF10651	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0026064_35	1160721.RBI_I00206	55.1	0.00000000495	N/A	N/A
COG	UHGV-0026064_36	COG2944	N/A	N/A	DNA-binding transcriptional regulator YiaG, XRE-type HTH domain	N/A
structural_annotation	UHGV-0026064_36	PF13560,NF040522	N/A	N/A	N/A	N/A
PHROG	UHGV-0026064_39	phrog_3754	93.5	2.1e-27	N/A	unknown function
eggNOG-mapper	UHGV-0026064_39	1235790.C805_00054	114.0	6.74e-31	N/A	N/A
PHROG	UHGV-0026064_40	phrog_21718	84.2	1.6e-24	N/A	unknown function
eggNOG-mapper	UHGV-0026064_40	397290.C810_05210	76.3	0.00000000000000246	N/A	N/A
PHROG	UHGV-0026064_41	phrog_22984	58.7	6.2e-17	N/A	unknown function
PHROG	UHGV-0026064_42	phrog_16490	197.1	0	N/A	unknown function
eggNOG-mapper	UHGV-0026064_42	397290.C810_01328	138.0	3.04e-36	N/A	N/A
PHROG	UHGV-0026064_43	phrog_20016	199.6	0	N/A	unknown function
UniRef90	UHGV-0026064_43	UniRef90_A0A285PT46	213.0	0	Tumour necrosis factor-like domain	N/A
eggNOG-mapper	UHGV-0026064_43	1226322.HMPREF1545_00077	183.0	0	N/A	N/A
structural_annotation	UHGV-0026064_43	PF18573,NF033147	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0026064_44	PF12510	N/A	N/A	N/A	N/A
KOfam	UHGV-0026064_46	K14059	125.3	7.6e-37	int; integrase	N/A
PHROG	UHGV-0026064_46	phrog_1	108.5	6.5e-32	integrase	integration and excision
UniRef90	UHGV-0026064_46	UniRef90_E2ZNV1	740.0	0	Site-specific recombinase, phage integrase family	N/A
eggNOG-mapper	UHGV-0026064_46	748224.HMPREF9436_03382	740.0	0	Belongs to the 'phage' integrase family	N/A
Pfam	UHGV-0026064_46	PF14659	N/A	N/A	Phage integrase, N-terminal SAM-like domain	Phage_int_SAM_3
Pfam	UHGV-0026064_46	PF00589	N/A	N/A	Phage integrase family	Phage_integrase
COG	UHGV-0026064_46	COG0582	N/A	N/A	Integrase/recombinase, includes phage integrase	N/A
structural_annotation	UHGV-0026064_46	PF00589,PF14659,MF_01808,NF007246,COG4973	N/A	N/A	N/A	N/A
KOfam	UHGV-0026064_47	K15773	41.3	0.000000000027	hipB; HTH-type transcriptional regulator / antitoxin HipB	N/A
UniRef90	UHGV-0026064_47	UniRef90_A0A6N7TLT0	343.0	0	Helix-turn-helix domain-containing protein	N/A
eggNOG-mapper	UHGV-0026064_47	266265.Bxe_A3948	54.3	0.000000178	Helix-turn-helix domain	N/A
Pfam	UHGV-0026064_47	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
COG	UHGV-0026064_47	COG1396	N/A	N/A	Transcriptional regulator, contains XRE-family HTH domain	N/A
structural_annotation	UHGV-0026064_47	PF13560,MF_00535,NF041951,COG1396	N/A	N/A	N/A	N/A
UniRef90	UHGV-0026064_50	UniRef90_A0A1W2B3I7	96.7	7.45e-21	Ig-like domain (Group 2)	N/A
eggNOG-mapper	UHGV-0026064_50	321955.AAGP01000017_gene2211	55.8	0.000000308	N/A	N/A
structural_annotation	UHGV-0026064_50	PF16900,NF040991	N/A	N/A	N/A	N/A
KOfam	UHGV-0026064_53	K22300	67.6	2.5e-19	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	N/A
PHROG	UHGV-0026064_53	phrog_8	55.3	9.1e-16	transcriptional regulator	transcription regulation
UniRef90	UHGV-0026064_53	UniRef90_A0A844DFR0	188.0	0	Helix-turn-helix domain-containing protein	N/A
eggNOG-mapper	UHGV-0026064_53	748224.HMPREF9436_01444	147.0	1.06499e-43	N/A	N/A
Pfam	UHGV-0026064_53	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
COG	UHGV-0026064_53	COG1396	N/A	N/A	Transcriptional regulator, contains XRE-family HTH domain	N/A
structural_annotation	UHGV-0026064_53	PF01381,MF_00535,NF041951,COG1476	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0026064_55	PF01775,MF_00273,NF001981,COG2157	N/A	N/A	N/A	N/A
PHROG	UHGV-0026064_56	phrog_32852	43.6	0.0000000000037	N/A	unknown function
PHROG	UHGV-0026064_59	phrog_4652	92.4	9.1e-28	N/A	unknown function
eggNOG-mapper	UHGV-0026064_59	397290.C810_01459	160.0	0	N/A	N/A
structural_annotation	UHGV-0026064_59	TIGR02582,COG1604	N/A	N/A	N/A	N/A
PHROG	UHGV-0026064_60	phrog_15946	80.7	3.8e-24	N/A	unknown function
eggNOG-mapper	UHGV-0026064_60	1041147.AUFB01000014_gene330	56.6	0.00000014	N/A	N/A
eggNOG-mapper	UHGV-0026064_61	1121865.OMW_01950	70.9	0.00000000000000608	N/A	N/A
structural_annotation	UHGV-0026064_61	PF17516,NF007197	N/A	N/A	N/A	N/A
KOfam	UHGV-0026064_63	K13884	55.3	7.6e-16	MARCO; macrophage receptor with collagenous structure	N/A
PHROG	UHGV-0026064_63	phrog_4433	159.6	0	N/A	unknown function
eggNOG-mapper	UHGV-0026064_63	33035.JPJF01000122_gene2458	105.0	1.98e-23	regulation of DNA-templated transcription, elongation	N/A
Pfam	UHGV-0026064_63	PF01391	N/A	N/A	Collagen triple helix repeat (20 copies)	Collagen
COG	UHGV-0026064_63	COG5164	N/A	N/A	Transcription elongation factor SPT5	N/A

All viral genomes

ID	Representative?	Length (bps)	% GC Content	CheckV Completeness	geNomad Score
UHGV-0026064	Yes	37,352	55	88	1