vOTU vOTU-104451

vOTU: vOTU-104451

Overview

Genome (FASTA) Annotation Track (GFF) Proteins (FASTA) Protein Annotation (TSV)

Cluster properties
vOTU ID	vOTU-104451
Number of genomes	1
Taxonomy (ICTV)	Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes
Taxonomy (UHGV)	vFAM-00004 → vSUBFAM-00005 → vOTU-104451
Host lineage	Bacteria → Firmicutes_A → Clostridia → Oscillospirales → Oscillospiraceae
Host range breadth	Family
Lifestyle	temperate (evidence: BACPHLIP)

Representative genome
Genome ID	UHGV-0618405
Biosample ID	SAMEA3444268
Genome length (bp)	36,842 bps
CheckV completeness	87.85% (Medium-quality)
CDS count	74
CDS density	91.59%
tRNA count	0
Integrase	No
Viral confidence	Confident

Host assignment details
Assignment method	CRISPR
CRISPR-predicted host lineage	Bacteria → Firmicutes_A → Clostridia → Oscillospirales → Oscillospiraceae	Total connections	122	Host agreement	91.8
PHIST-predicted host lineage		Total connections		Host agreement

Representative genome content

Select to view: Genome Viewer Functional Annotation

Genome view (completeness: 87.85)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
structural_annotation	UHGV-0618405_7	PF06003,MF_01354,TIGR00739,COG5475	N/A	N/A	N/A	N/A
KOfam	UHGV-0618405_8	K22299	47.4	0.00000000000042	rghR; HTH-type transcriptional regulator, competence development regulator	N/A
PHROG	UHGV-0618405_8	phrog_8	64.7	1.8e-18	transcriptional regulator	transcription regulation
UniRef90	UHGV-0618405_8	UniRef90_A0A8D9PDC4	152.0	0	Repressor protein	N/A
eggNOG-mapper	UHGV-0618405_8	1226322.HMPREF1545_00039	79.0	1.69e-18	sequence-specific DNA binding	N/A
Pfam	UHGV-0618405_8	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
COG	UHGV-0618405_8	COG1396	N/A	N/A	Transcriptional regulator, contains XRE-family HTH domain	N/A
structural_annotation	UHGV-0618405_8	PF01381,MF_00535,NF041951,COG1476	N/A	N/A	N/A	N/A
KOfam	UHGV-0618405_9	K07319	123.3	2e-36	yhdJ; adenine-specific DNA-methyltransferase [EC:2.1.1.72]	N/A
PHROG	UHGV-0618405_9	phrog_498	439.8	0	DNA methyltransferase	other
UniRef90	UHGV-0618405_9	UniRef90_A0A810Q3Z7	437.0	0	N6_N4_Mtase domain-containing protein	N/A
eggNOG-mapper	UHGV-0618405_9	1423758.BN55_01455	424.0	0	DNA methylase	N/A
PADLOC	UHGV-0618405_9	MTase_II_00015	237.0	0	Type II methyltransferase	RM
Pfam	UHGV-0618405_9	PF02195	N/A	N/A	ParB/Sulfiredoxin domain	ParBc
Pfam	UHGV-0618405_9	PF01555	N/A	N/A	DNA methylase	N6_N4_Mtase
COG	UHGV-0618405_9	COG0863	N/A	N/A	DNA modification methylase	N/A
structural_annotation	UHGV-0618405_9	PF01555,PF02195,MF_02015,MF_01872,NF010253,TIGR04285,COG0863,COG1475	N/A	N/A	N/A	N/A
KOfam	UHGV-0618405_12	K06909	115.2	6.8e-34	xtmB; phage terminase large subunit	N/A
PHROG	UHGV-0618405_12	phrog_2	116.9	2.7e-34	terminase large subunit	head and packaging
UniRef90	UHGV-0618405_12	UniRef90_A0A3D3Y0N9	418.0	0	PBSX family phage terminase large subunit	N/A
eggNOG-mapper	UHGV-0618405_12	1226322.HMPREF1545_00043	392.0	0	Phage terminase large subunit	N/A
Pfam	UHGV-0618405_12	PF03237	N/A	N/A	Terminase large subunit, T4likevirus-type, N-terminal	Terminase_6N
NCBIFam	UHGV-0618405_12	TIGR01547.1	N/A	N/A	PBSX family phage terminase large subunit	N/A
COG	UHGV-0618405_12	COG1783	N/A	N/A	Phage terminase large subunit	N/A
structural_annotation	UHGV-0618405_12	PF04466,PF20454,MF_04148,TIGR01547,COG1783	N/A	N/A	N/A	N/A
PHROG	UHGV-0618405_13	phrog_533	397.4	0	portal protein	head and packaging
UniRef90	UHGV-0618405_13	UniRef90_A0A1C5N775	584.0	0	Phage portal protein, putative, A118 family	N/A
eggNOG-mapper	UHGV-0618405_13	1226322.HMPREF1545_00044	552.0	0	N/A	N/A
Pfam	UHGV-0618405_13	PF05133	N/A	N/A	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
structural_annotation	UHGV-0618405_13	PF05133,MF_04120,TIGR01542,COG5511	N/A	N/A	N/A	N/A
PHROG	UHGV-0618405_14	phrog_581	286.0	0	minor head protein	head and packaging
UniRef90	UHGV-0618405_14	UniRef90_UPI001D080D49	555.0	0	phage minor capsid protein	N/A
eggNOG-mapper	UHGV-0618405_14	1226322.HMPREF1545_00046	375.0	0	Phage minor capsid protein 2	N/A
Pfam	UHGV-0618405_14	PF06152	N/A	N/A	Phage minor capsid protein 2	Phage_min_cap2
COG	UHGV-0618405_14	COG2369	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0618405_14	PF06152,TIGR01641	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0618405_16	PF18152	N/A	N/A	N/A	N/A
UniRef90	UHGV-0618405_17	UniRef90_A0A6B9SU02	84.7	6.5e-17	Fibronectin autolysin	N/A
structural_annotation	UHGV-0618405_17	PF06810	N/A	N/A	N/A	N/A
PHROG	UHGV-0618405_18	phrog_544	190.8	0	major head protein	head and packaging
UniRef90	UHGV-0618405_18	UniRef90_A0A810PZM2	500.0	0	S-l_SbsC_C domain-containing protein	N/A
eggNOG-mapper	UHGV-0618405_18	1347392.CCEZ01000005_gene1236	285.0	0	N/A	N/A
structural_annotation	UHGV-0618405_18	PF03864,MF_04119,TIGR04387,COG4834	N/A	N/A	N/A	N/A
PHROG	UHGV-0618405_19	phrog_541	104.0	8.9e-31	head-tail adaptor	connector
eggNOG-mapper	UHGV-0618405_19	642492.Clole_0822	67.4	0.00000000000206	N/A	N/A
PHROG	UHGV-0618405_20	phrog_3366	88.0	9.7e-26	N/A	unknown function
eggNOG-mapper	UHGV-0618405_20	1226322.HMPREF1545_00053	148.0	5.46506e-44	N/A	N/A
structural_annotation	UHGV-0618405_20	PF20536,TIGR01563	N/A	N/A	N/A	N/A
PHROG	UHGV-0618405_21	phrog_556	72.7	4.2e-21	minor head protein	head and packaging
UniRef90	UHGV-0618405_21	UniRef90_A0A2U1BEM0	190.0	0	Minor capsid protein	N/A
eggNOG-mapper	UHGV-0618405_21	1226322.HMPREF1545_00054	154.0	0	Minor capsid protein	N/A
Pfam	UHGV-0618405_21	PF11114	N/A	N/A	Minor capsid protein	Minor_capsid_2
structural_annotation	UHGV-0618405_21	PF11114,TIGR01725	N/A	N/A	N/A	N/A
PHROG	UHGV-0618405_22	phrog_3266	46.7	0.00000000000045	tail completion	connector
eggNOG-mapper	UHGV-0618405_22	1232443.BAIA02000078_gene24	150.0	2.8026e-45	N/A	N/A
structural_annotation	UHGV-0618405_22	PF12691	N/A	N/A	N/A	N/A
PHROG	UHGV-0618405_23	phrog_3099	93.4	2.4e-27	N/A	unknown function
eggNOG-mapper	UHGV-0618405_23	1232443.BAIA02000078_gene23	236.0	0	N/A	N/A
structural_annotation	UHGV-0618405_23	TIGR02126	N/A	N/A	N/A	N/A
PHROG	UHGV-0618405_24	phrog_11299	89.5	3.8e-26	N/A	unknown function
eggNOG-mapper	UHGV-0618405_24	693746.OBV_18160	103.0	1.98e-26	N/A	N/A
structural_annotation	UHGV-0618405_24	PF10666	N/A	N/A	N/A	N/A
PHROG	UHGV-0618405_25	phrog_706	125.1	4.8e-37	N/A	unknown function
UniRef90	UHGV-0618405_25	UniRef90_UPI000682A80B	251.0	0	Gp15 family bacteriophage protein	N/A
eggNOG-mapper	UHGV-0618405_25	693746.OBV_18170	239.0	0	Bacteriophage Gp15 protein	N/A
Pfam	UHGV-0618405_25	PF06854	N/A	N/A	Bacteriophage Gp15 protein	Phage_Gp15
structural_annotation	UHGV-0618405_25	PF06854	N/A	N/A	N/A	N/A
PHROG	UHGV-0618405_26	phrog_806	77.0	1.9e-22	N/A	unknown function
UniRef90	UHGV-0618405_26	UniRef90_UPI00137B5163	201.0	0	N/A	N/A
eggNOG-mapper	UHGV-0618405_26	397290.C810_05150	141.0	6.73e-40	N/A	N/A
Pfam	UHGV-0618405_26	PF11611	N/A	N/A	N/A	DUF4352
structural_annotation	UHGV-0618405_26	PF11611,MF_00791,NF003967,COG2967	N/A	N/A	N/A	N/A
PHROG	UHGV-0618405_27	phrog_1535	98.9	0	tail length tape measure protein	tail
UniRef90	UHGV-0618405_27	UniRef90_A0A810PX76	159.0	1.53e-37	Phage tail tape measure protein	N/A
eggNOG-mapper	UHGV-0618405_27	1235797.C816_04182	277.0	0	SLT domain	N/A
COG	UHGV-0618405_27	COG1511	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0618405_27	PF05546,TIGR02559	N/A	N/A	N/A	N/A
PHROG	UHGV-0618405_28	phrog_1194	75.8	4.7e-22	N/A	unknown function
eggNOG-mapper	UHGV-0618405_28	1232443.BAIA02000078_gene17	119.0	3.17e-33	N/A	N/A
structural_annotation	UHGV-0618405_28	PF20458,TIGR02126,COG5437	N/A	N/A	N/A	N/A
PHROG	UHGV-0618405_29	phrog_32308	47.4	0.000000000000036	N/A	unknown function
UniRef90	UHGV-0618405_29	UniRef90_A0A2Z4QA17	263.0	0	KID repeat-containing protein	N/A
eggNOG-mapper	UHGV-0618405_29	1235797.C816_04180	315.0	0	N/A	N/A
structural_annotation	UHGV-0618405_29	PF21683,TIGR02126,COG4379	N/A	N/A	N/A	N/A
UniRef90	UHGV-0618405_30	UniRef90_A0A856HZ25	133.0	1.13e-30	Tail fiber domain-containing protein	N/A
eggNOG-mapper	UHGV-0618405_30	1235797.C816_04179	207.0	0	Chaperone of endosialidase	N/A
structural_annotation	UHGV-0618405_30	TIGR01643	N/A	N/A	N/A	N/A
Pfam	UHGV-0618405_33	PF18902	N/A	N/A	N/A	DUF5658
structural_annotation	UHGV-0618405_33	PF18902	N/A	N/A	N/A	N/A
PHROG	UHGV-0618405_36	phrog_10993	52.5	5.2e-16	Hoc-like head decoration	head and packaging
UniRef90	UHGV-0618405_36	UniRef90_A0A252F2M2	244.0	0	N/A	N/A
Pfam	UHGV-0618405_36	PF19789	N/A	N/A	N/A	DUF6273
structural_annotation	UHGV-0618405_36	PF19789	N/A	N/A	N/A	N/A
PHROG	UHGV-0618405_39	phrog_1863	66.3	2.7e-19	N/A	unknown function
eggNOG-mapper	UHGV-0618405_39	748224.HMPREF9436_00408	102.0	6.14e-28	N/A	N/A
PHROG	UHGV-0618405_40	phrog_1129	63.5	2.5e-18	holin	lysis
UniRef90	UHGV-0618405_40	UniRef90_UPI001C0F421C	134.0	2.8e-39	phage holin family protein	N/A
eggNOG-mapper	UHGV-0618405_40	1226322.HMPREF1545_00069	128.0	8.82e-38	Phage holin family Hol44, in holin superfamily V	N/A
Pfam	UHGV-0618405_40	PF16079	N/A	N/A	Phage holin family Hol44, in holin superfamily V	Phage_holin_5_2
structural_annotation	UHGV-0618405_40	PF06946	N/A	N/A	N/A	N/A
PHROG	UHGV-0618405_42	phrog_21357	82.6	4.2e-24	endolysin	lysis
UniRef90	UHGV-0618405_42	UniRef90_UPI001C00DA69	268.0	0	CHAP domain-containing protein	N/A
eggNOG-mapper	UHGV-0618405_42	1007096.BAGW01000017_gene816	135.0	2.11e-37	CHAP domain	N/A
Pfam	UHGV-0618405_42	PF05257	N/A	N/A	CHAP domain	CHAP
COG	UHGV-0618405_42	COG0791	N/A	N/A	Cell wall-associated hydrolase, NlpC_P60 family	N/A
structural_annotation	UHGV-0618405_42	PF06672,TIGR02594,COG4322	N/A	N/A	N/A	N/A
UniRef90	UHGV-0618405_43	UniRef90_A0A8D9PDQ3	66.2	0.00000000000141	ECF sigma factor	N/A
structural_annotation	UHGV-0618405_43	PF04545,MF_00674,NF008895,COG1342	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0618405_44	742738.HMPREF9460_00886	152.0	2.01787e-43	N/A	N/A
Pfam	UHGV-0618405_44	PF18912	N/A	N/A	Double zinc ribbon domain	DZR_2
UniRef90	UHGV-0618405_45	UniRef90_A0A6N3FXW7	147.0	1.68156e-44	Helix-turn-helix	N/A
eggNOG-mapper	UHGV-0618405_45	742738.HMPREF9460_04059	82.8	6.53e-19	Helix-turn-helix XRE-family like proteins	N/A
Pfam	UHGV-0618405_45	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
COG	UHGV-0618405_45	COG1396	N/A	N/A	Transcriptional regulator, contains XRE-family HTH domain	N/A
structural_annotation	UHGV-0618405_45	PF01381,NF041951,COG1396	N/A	N/A	N/A	N/A
AcrCatalog	UHGV-0618405_46	cluster_39973	38.1	0.00000278	NA	N/A
PHROG	UHGV-0618405_48	phrog_3754	112.5	2.7e-33	N/A	unknown function
eggNOG-mapper	UHGV-0618405_48	1226322.HMPREF1545_00073	165.0	0	N/A	N/A
PHROG	UHGV-0618405_49	phrog_21718	110.6	1.1e-32	N/A	unknown function
eggNOG-mapper	UHGV-0618405_49	397290.C810_05210	81.3	2.49e-17	N/A	N/A
PHROG	UHGV-0618405_50	phrog_22984	89.9	1.8e-26	N/A	unknown function
PHROG	UHGV-0618405_51	phrog_16490	116.6	3.9e-35	N/A	unknown function
eggNOG-mapper	UHGV-0618405_51	1408437.JNJN01000043_gene803	130.0	1.94e-34	N/A	N/A
PHROG	UHGV-0618405_52	phrog_20016	173.8	0	N/A	unknown function
UniRef90	UHGV-0618405_52	UniRef90_A0A2Z4QB67	157.0	0	Carbohydrate binding domain/collagen triple helix repeat protein	N/A
eggNOG-mapper	UHGV-0618405_52	1226322.HMPREF1545_00077	149.0	2.94273e-44	N/A	N/A
structural_annotation	UHGV-0618405_52	PF18573,NF033147	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0618405_53	PF12510	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0618405_54	1226322.HMPREF1545_00079	87.8	3.67e-21	N/A	N/A
KOfam	UHGV-0618405_55	K14059	234.3	0	int; integrase	N/A
PHROG	UHGV-0618405_55	phrog_1	206.1	0	integrase	integration and excision
UniRef90	UHGV-0618405_55	UniRef90_UPI001C124E9B	412.0	0	site-specific integrase	N/A
eggNOG-mapper	UHGV-0618405_55	1226322.HMPREF1545_00144	370.0	0	Belongs to the 'phage' integrase family	N/A
Pfam	UHGV-0618405_55	PF14659	N/A	N/A	Phage integrase, N-terminal SAM-like domain	Phage_int_SAM_3
Pfam	UHGV-0618405_55	PF00589	N/A	N/A	Phage integrase family	Phage_integrase
COG	UHGV-0618405_55	COG0582	N/A	N/A	Integrase/recombinase, includes phage integrase	N/A
structural_annotation	UHGV-0618405_55	PF00589,PF12167,MF_02055,NF040815,COG4974	N/A	N/A	N/A	N/A
COG	UHGV-0618405_56	COG1396	N/A	N/A	Transcriptional regulator, contains XRE-family HTH domain	N/A
structural_annotation	UHGV-0618405_56	PF01381,MF_02017,TIGR03070,COG3655	N/A	N/A	N/A	N/A
UniRef90	UHGV-0618405_57	UniRef90_UPI0016839192	104.0	4.63e-27	heavy metal-binding domain-containing protein	N/A
eggNOG-mapper	UHGV-0618405_57	1151292.QEW_2544	101.0	1.21e-26	Putative heavy-metal-binding	N/A
COG	UHGV-0618405_57	COG0393	N/A	N/A	N/A	N/A
PHROG	UHGV-0618405_61	phrog_8	40.4	0.000000000059	transcriptional regulator	transcription regulation
UniRef90	UHGV-0618405_61	UniRef90_N9Z4Q7	52.4	0.00000017	HTH cro/C1-type domain-containing protein	N/A
Pfam	UHGV-0618405_61	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
structural_annotation	UHGV-0618405_61	PF01381,NF041951,COG1476	N/A	N/A	N/A	N/A
UniRef90	UHGV-0618405_62	UniRef90_UPI001EDEB2FF	72.8	0.00000000000000441	helix-turn-helix domain-containing protein	N/A
structural_annotation	UHGV-0618405_62	PF13560,MF_00535,NF041951,COG3655	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0618405_65	PF14354,TIGR03655	N/A	N/A	N/A	N/A
PHROG	UHGV-0618405_67	phrog_4973	50.2	0.000000000000039	N/A	unknown function
UniRef90	UHGV-0618405_67	UniRef90_A0A3D3Y5F2	66.6	0.000000000000597	DNA-binding protein	N/A
eggNOG-mapper	UHGV-0618405_67	935261.JAGL01000009_gene1175	46.2	0.00000967	Helix-turn-helix domain	N/A
Pfam	UHGV-0618405_67	PF14090	N/A	N/A	Helix-turn-helix domain	HTH_39
structural_annotation	UHGV-0618405_67	PF14090,NF040939,COG4738	N/A	N/A	N/A	N/A
PHROG	UHGV-0618405_69	phrog_7838	144.9	4.90454e-43	exonuclease	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0618405_69	UniRef90_A0A8D9UGW3	267.0	0	DNA repair protein RAD52-like protein	N/A
eggNOG-mapper	UHGV-0618405_69	742767.HMPREF9456_02052	185.0	0	N/A	N/A
structural_annotation	UHGV-0618405_69	PF04098,TIGR00607,COG4380	N/A	N/A	N/A	N/A
PHROG	UHGV-0618405_70	phrog_72	73.0	3.8e-21	NinB/ Orf homologous recombination mediator	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0618405_70	UniRef90_A0A8D9PDS2	180.0	0	NinB protein	N/A
eggNOG-mapper	UHGV-0618405_70	445972.ANACOL_01825	156.0	0	N/A	N/A
structural_annotation	UHGV-0618405_70	PF05772	N/A	N/A	N/A	N/A
PHROG	UHGV-0618405_71	phrog_7370	60.1	2.9e-17	HNH endonuclease	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0618405_71	UniRef90_UPI001C122365	134.0	8.81e-39	HNH endonuclease	N/A
eggNOG-mapper	UHGV-0618405_71	1235800.C819_02254	69.7	0.0000000000000791	HNH nucleases	N/A
Pfam	UHGV-0618405_71	PF01844	N/A	N/A	HNH endonuclease	HNH
KOfam	UHGV-0618405_72	K03111	138.3	7.59994e-41	ssb; single-strand DNA-binding protein	N/A
PHROG	UHGV-0618405_72	phrog_44	147.6	6.16571e-44	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0618405_72	UniRef90_A0A352RPR0	191.0	0	Single-stranded DNA-binding protein	N/A
eggNOG-mapper	UHGV-0618405_72	693746.OBV_12860	183.0	0	Single-strand binding protein family	N/A
Pfam	UHGV-0618405_72	PF00436	N/A	N/A	Single-strand binding protein family	SSB
NCBIFam	UHGV-0618405_72	TIGR00621.2	N/A	N/A	single-stranded DNA-binding protein	N/A
COG	UHGV-0618405_72	COG0629	N/A	N/A	Single-stranded DNA-binding protein	N/A
HAMAP	UHGV-0618405_72	MF_00984	N/A	N/A	Single-stranded DNA-binding protein	N/A
structural_annotation	UHGV-0618405_72	PF00436,MF_00984,NF005241,COG0629	N/A	N/A	N/A	N/A
PHROG	UHGV-0618405_73	phrog_2149	67.5	2.2e-19	replication initiation protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0618405_73	UniRef90_A0A417QFV0	104.0	1.67e-23	Transcriptional regulator	N/A
eggNOG-mapper	UHGV-0618405_73	742740.HMPREF9474_03117	181.0	0	N/A	N/A
structural_annotation	UHGV-0618405_73	PF01978,NF000243,COG0735	N/A	N/A	N/A	N/A

All viral genomes

ID	Representative?	Length (bps)	% GC Content	CheckV Completeness	geNomad Score
UHGV-0618405	Yes	36,842	53	88	1