vOTU vOTU-104542

vOTU: vOTU-104542

Overview

Genome (FASTA) Annotation Track (GFF) Proteins (FASTA) Protein Annotation (TSV)

Cluster properties
vOTU ID	vOTU-104542
Number of genomes	1
Taxonomy (ICTV)	Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes
Taxonomy (UHGV)	vFAM-00040 → vOTU-104542
Host lineage	Bacteria → Firmicutes_A → Clostridia
Host range breadth	Class
Lifestyle	lytic (evidence: BACPHLIP)

Representative genome
Genome ID	UHGV-1435516
Biosample ID	SAMEA2579933
Genome length (bp)	32,083 bps
CheckV completeness	78.99% (Medium-quality)
CDS count	38
CDS density	94.55%
tRNA count	0
Integrase	No
Viral confidence	Confident

Host assignment details
Assignment method	PHIST
CRISPR-predicted host lineage	Bacteria → Firmicutes → Bacilli → Staphylococcales → Staphylococcaceae → Staphylococcus → Staphylococcus haemolyticus	Total connections	1	Host agreement	100
PHIST-predicted host lineage	Bacteria → Firmicutes_A → Clostridia	Total connections	2	Host agreement	100

Representative genome content

Select to view: Genome Viewer Functional Annotation

Genome view (completeness: 78.99)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
KOfam	UHGV-1435516_3	K06909	133.2	2.3e-39	xtmB; phage terminase large subunit	N/A
PHROG	UHGV-1435516_3	phrog_979	167.9	0	terminase large subunit	head and packaging
UniRef90	UHGV-1435516_3	UniRef90_A0A0M2NDA4	555.0	0	Phage terminase, large subunit	N/A
eggNOG-mapper	UHGV-1435516_3	1232449.BAHV02000016_gene1824	500.0	0	N/A	N/A
Pfam	UHGV-1435516_3	PF04466	N/A	N/A	Phage terminase large subunit	Terminase_3
COG	UHGV-1435516_3	COG1783	N/A	N/A	Phage terminase large subunit	N/A
structural_annotation	UHGV-1435516_3	PF04466,PF20454,MF_04148,TIGR01547,COG1783	N/A	N/A	N/A	N/A
PHROG	UHGV-1435516_5	phrog_156	118.3	1.8e-35	portal protein	head and packaging
eggNOG-mapper	UHGV-1435516_5	1408437.JNJN01000001_gene1708	400.0	0	N/A	N/A
structural_annotation	UHGV-1435516_5	PF16510,MF_04120,TIGR01538,COG5511	N/A	N/A	N/A	N/A
PHROG	UHGV-1435516_7	phrog_422	164.7	0	major head protein	head and packaging
UniRef90	UHGV-1435516_7	UniRef90_UPI001C115D36	334.0	0	chitobiase/beta-hexosaminidase C-terminal domain-containing protein	N/A
eggNOG-mapper	UHGV-1435516_7	1408437.JNJN01000001_gene1710	302.0	0	N/A	N/A
Pfam	UHGV-1435516_7	PF13290	N/A	N/A	Chitobiase/beta-hexosaminidase C-terminal domain	CHB_HEX_C_1
structural_annotation	UHGV-1435516_7	PF19821,PF13287,MF_04119,TIGR04387,COG4653	N/A	N/A	N/A	N/A
structural_annotation	UHGV-1435516_8	PF11650	N/A	N/A	N/A	N/A
PHROG	UHGV-1435516_9	phrog_3287	72.2	4.1e-22	virion structural protein	head and packaging
UniRef90	UHGV-1435516_9	UniRef90_UPI001F43F8A6	122.0	2.59e-25	N/A	N/A
eggNOG-mapper	UHGV-1435516_9	1408437.JNJN01000001_gene1713	212.0	0	N/A	N/A
PHROG	UHGV-1435516_10	phrog_14469	40.2	0.000000000044	tail fiber protein	tail
eggNOG-mapper	UHGV-1435516_10	1232449.BAHV02000016_gene1815	92.0	6.14e-17	N/A	N/A
UniRef90	UHGV-1435516_13	UniRef90_UPI00163D2A12	67.8	0.00000000247	C1 family peptidase	N/A
Pfam	UHGV-1435516_13	PF00112	N/A	N/A	Papain family cysteine protease	Peptidase_C1
Pfam	UHGV-1435516_13	PF00395	N/A	N/A	S-layer homology domain	SLH
COG	UHGV-1435516_13	COG4870	N/A	N/A	Cysteine protease, C1A family	N/A
structural_annotation	UHGV-1435516_13	PF00112,PF00395,COG4870	N/A	N/A	N/A	N/A
PHROG	UHGV-1435516_14	phrog_199	82.3	4.9e-24	holin	lysis
UniRef90	UHGV-1435516_14	UniRef90_A0A2N5P5I5	164.0	0	Holin	N/A
eggNOG-mapper	UHGV-1435516_14	411459.RUMOBE_01714	160.0	0	Bacteriophage holin family	N/A
Pfam	UHGV-1435516_14	PF05105	N/A	N/A	Bacteriophage holin family	Phage_holin_4_1
NCBIFam	UHGV-1435516_14	TIGR01593.1	N/A	N/A	toxin secretion/phage lysis holin	N/A
COG	UHGV-1435516_14	COG4824	N/A	N/A	Phage-related holin (Lysis protein)	N/A
structural_annotation	UHGV-1435516_14	PF05105,TIGR01593,COG4824	N/A	N/A	N/A	N/A
KOfam	UHGV-1435516_15	K01447	121.1	1.3e-35	xlyAB; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]	N/A
PHROG	UHGV-1435516_15	phrog_9611	114.9	7e-34	endolysin	lysis
UniRef90	UHGV-1435516_15	UniRef90_UPI00137AA4B2	194.0	0	N-acetylmuramoyl-L-alanine amidase	N/A
eggNOG-mapper	UHGV-1435516_15	97138.C820_02012	152.0	3.64338e-43	Ami_2	N/A
Pfam	UHGV-1435516_15	PF01510	N/A	N/A	N-acetylmuramoyl-L-alanine amidase	Amidase_2
COG	UHGV-1435516_15	COG5632	N/A	N/A	N-acetylmuramoyl-L-alanine amidase CwlA	N/A
eggNOG-mapper	UHGV-1435516_17	1121091.AUMP01000003_gene2597	100.0	5.3e-18	Catalyzes a salvage reaction resulting in the formation of AMP, that is energically less costly than de novo synthesis	N/A
Pfam	UHGV-1435516_17	PF18857	N/A	N/A	Large polyvalent protein associated domain 38	LPD38
COG	UHGV-1435516_17	COG0503	N/A	N/A	Adenine/guanine phosphoribosyltransferase or related PRPP-binding protein	N/A
PHROG	UHGV-1435516_21	phrog_8684	81.0	1.7e-24	N/A	unknown function
UniRef90	UHGV-1435516_21	UniRef90_C7GC23	95.9	8.36e-23	YopX domain-containing protein	N/A
eggNOG-mapper	UHGV-1435516_21	411473.RUMCAL_00282	68.2	0.0000000000118	YopX protein	N/A
Pfam	UHGV-1435516_21	PF09643	N/A	N/A	YopX protein	YopX
NCBIFam	UHGV-1435516_21	TIGR01671.1	N/A	N/A	phage conserved hypothetical protein TIGR01671	N/A
structural_annotation	UHGV-1435516_21	PF09643,TIGR01671	N/A	N/A	N/A	N/A
structural_annotation	UHGV-1435516_22	PF18300,MF_01549,NF007981	N/A	N/A	N/A	N/A
PHROG	UHGV-1435516_25	phrog_801	102.2	6.7e-30	endolysin; inhibits RNA polymerase	lysis
UniRef90	UHGV-1435516_25	UniRef90_A0A7X8EV86	92.0	2.42e-21	N/A	N/A
eggNOG-mapper	UHGV-1435516_25	1205681.CALW02000103_gene1536	72.8	0.0000000000000168	N/A	N/A
Pfam	UHGV-1435516_25	PF18909	N/A	N/A	dATP/dGTP diphosphohydrolase, N-terminal	dGTP_diPhyd_N
structural_annotation	UHGV-1435516_25	PF18909	N/A	N/A	N/A	N/A
PHROG	UHGV-1435516_27	phrog_1313	291.2	0	DNA helicase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1435516_27	UniRef90_A0A1V5XFC1	298.0	0	Virulence-associated protein E	N/A
eggNOG-mapper	UHGV-1435516_27	1235793.C809_02292	212.0	0	Virulence-associated protein E	N/A
Pfam	UHGV-1435516_27	PF05272	N/A	N/A	Virulence-associated protein E-like domain	VapE-like_dom
COG	UHGV-1435516_27	COG5545	N/A	N/A	Predicted P-loop ATPase and inactivated derivatives	N/A
structural_annotation	UHGV-1435516_27	PF05272,MF_00016,NF005477,COG5545	N/A	N/A	N/A	N/A
KOfam	UHGV-1435516_28	K02316	75.5	7e-22	dnaG; DNA primase [EC:2.7.7.101]	N/A
PHROG	UHGV-1435516_28	phrog_11992	94.1	1.4e-27	N/A	unknown function
UniRef90	UHGV-1435516_28	UniRef90_A0A3E2SYR0	77.8	0.0000000000000231	DNA primase	N/A
eggNOG-mapper	UHGV-1435516_28	877411.JMMA01000002_gene611	80.5	3.23e-16	CHC2 zinc finger	N/A
PADLOC	UHGV-1435516_28	drt-UG29	51.1	0.000000000000011	DRT	DRT
Pfam	UHGV-1435516_28	PF01807	N/A	N/A	CHC2 zinc finger	zf-CHC2
COG	UHGV-1435516_28	COG0358	N/A	N/A	DNA primase (bacterial type)	N/A
structural_annotation	UHGV-1435516_28	PF01807,PF15188	N/A	N/A	N/A	N/A
PHROG	UHGV-1435516_29	phrog_3490	102.7	3.4e-30	ERCC4-type nuclease	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1435516_29	UniRef90_A0A3D3U9X5	130.0	4.04e-36	ERCC4 domain-containing protein	N/A
eggNOG-mapper	UHGV-1435516_29	357809.Cphy_2986	89.7	1.35e-20	N/A	N/A
Pfam	UHGV-1435516_29	PF02732	N/A	N/A	ERCC4 domain	ERCC4
structural_annotation	UHGV-1435516_29	PF03834,NF040956,COG1948	N/A	N/A	N/A	N/A
KOfam	UHGV-1435516_30	K03111	142.7	3.80032e-42	ssb; single-strand DNA-binding protein	N/A
PHROG	UHGV-1435516_30	phrog_44	154.3	0	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1435516_30	UniRef90_A0A350J7S0	143.0	6.54e-41	Single-stranded DNA-binding protein	N/A
eggNOG-mapper	UHGV-1435516_30	1392491.JIAE01000001_gene2290	139.0	4.67e-40	Single-stranded DNA-binding protein	N/A
Pfam	UHGV-1435516_30	PF00436	N/A	N/A	Single-strand binding protein family	SSB
NCBIFam	UHGV-1435516_30	TIGR00621.2	N/A	N/A	single-stranded DNA-binding protein	N/A
COG	UHGV-1435516_30	COG0629	N/A	N/A	Single-stranded DNA-binding protein	N/A
HAMAP	UHGV-1435516_30	MF_00984	N/A	N/A	Single-stranded DNA-binding protein	N/A
structural_annotation	UHGV-1435516_30	PF00436,MF_00984,NF005241,COG0629	N/A	N/A	N/A	N/A
PHROG	UHGV-1435516_31	phrog_3657	358.4	0	N/A	unknown function
eggNOG-mapper	UHGV-1435516_31	1121864.OMO_02139	234.0	0	N/A	N/A
KOfam	UHGV-1435516_32	K10906	101.8	1.9e-38	recE; exodeoxyribonuclease VIII [EC:3.1.11.-]	N/A
PHROG	UHGV-1435516_32	phrog_412	241.5	0	exonuclease VIII	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1435516_32	UniRef90_A0A1C6FHM2	311.0	0	Exodeoxyribonuclease 8	N/A
eggNOG-mapper	UHGV-1435516_32	1097668.BYI23_B004550	110.0	3.42e-26	N/A	N/A
Pfam	UHGV-1435516_32	PF12684	N/A	N/A	N/A	DUF3799
structural_annotation	UHGV-1435516_32	PF12684,MF_03030,TIGR01896,COG2887	N/A	N/A	N/A	N/A
KOfam	UHGV-1435516_36	K22300	49.2	0.0000000000001	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	N/A
PHROG	UHGV-1435516_36	phrog_8	49.5	0.0000000000001	transcriptional regulator	transcription regulation
UniRef90	UHGV-1435516_36	UniRef90_W1IXZ2	54.7	0.000000099	Similarities with transcriptional regulator	N/A
eggNOG-mapper	UHGV-1435516_36	1499684.CCNP01000018_gene1302	50.8	0.00000218	Helix-turn-helix XRE-family like proteins	N/A
Pfam	UHGV-1435516_36	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
COG	UHGV-1435516_36	COG1476	N/A	N/A	DNA-binding transcriptional regulator, XRE-family HTH domain	N/A
structural_annotation	UHGV-1435516_36	PF13443,NF041951,COG1396	N/A	N/A	N/A	N/A
PHROG	UHGV-1435516_37	phrog_130	154.8	0	anti-repressor Ant	transcription regulation
UniRef90	UHGV-1435516_37	UniRef90_A0A1Y4EUA0	142.0	6.35e-38	Bro-N domain-containing protein	N/A
eggNOG-mapper	UHGV-1435516_37	411490.ANACAC_00813	162.0	0	BRO family, N-terminal domain	N/A
Pfam	UHGV-1435516_37	PF02498	N/A	N/A	BRO family, N-terminal domain	Bro-N
COG	UHGV-1435516_37	COG3617	N/A	N/A	Prophage antirepressor	N/A
PHROG	UHGV-1435516_38	phrog_27197	63.0	5.1e-18	N/A	unknown function
eggNOG-mapper	UHGV-1435516_38	445970.ALIPUT_01592	62.4	0.000000000409	DNA-templated transcription, initiation	N/A
COG	UHGV-1435516_38	COG1595	N/A	N/A	DNA-directed RNA polymerase specialized sigma subunit, sigma24 family	N/A

All viral genomes

ID	Representative?	Length (bps)	% GC Content	CheckV Completeness	geNomad Score
UHGV-1435516	Yes	32,083	40	79	1