vOTU vOTU-104558

vOTU: vOTU-104558

Overview

Genome (FASTA) Annotation Track (GFF) Proteins (FASTA) Protein Annotation (TSV)

Cluster properties
vOTU ID	vOTU-104558
Number of genomes	1
Taxonomy (ICTV)
Taxonomy (UHGV)	vFAM-00017 → vSUBFAM-02177 → vGENUS-02532 → vOTU-104558
Host lineage	Bacteria → Firmicutes_A → Clostridia → Oscillospirales → Ruminococcaceae → Gemmiger → Gemmiger qucibialis
Host range breadth	Species
Lifestyle	lytic (Evidence: BACPHLIP)

Representative genome
Genome ID	UHGV-0015834
Biosample ID	SAMEA4766052
Genome length (bp)	32,895 bps
CheckV completeness	54.05% (Medium-quality)
CDS count	37
CDS density	93.32%
tRNA count	0
Integrase	No
Viral confidence	Confident

Host assignment details
Assignment method	CRISPR
CRISPR-predicted host lineage	Bacteria → Firmicutes_A → Clostridia → Oscillospirales → Ruminococcaceae → Gemmiger → Gemmiger qucibialis	Total connections	10	Host agreement	100
PHIST-predicted host lineage		Total connections		Host agreement

Representative genome content

Select to view: Genome Viewer Functional Annotation

Genome view (completeness: 54.05)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
PHROG	UHGV-0015834_2	phrog_881	82.4	3e-24	holin	lysis
UniRef90	UHGV-0015834_2	UniRef90_UPI001D0692FC	108.0	9.64e-30	phage holin	N/A
eggNOG-mapper	UHGV-0015834_2	742740.HMPREF9474_02251	114.0	1.09e-32	Putative phage holin Dp-1	N/A
Pfam	UHGV-0015834_2	PF16938	N/A	N/A	Putative phage holin Dp-1	Phage_holin_Dp1
structural_annotation	UHGV-0015834_2	PF16938	N/A	N/A	N/A	N/A
PHROG	UHGV-0015834_3	phrog_4105	99.1	2.8e-29	N/A	unknown function
UniRef90	UHGV-0015834_3	UniRef90_A0A8D9UHA9	121.0	1.04e-33	Holin protein	N/A
eggNOG-mapper	UHGV-0015834_3	742733.HMPREF9469_05011	141.0	2.43966e-42	N/A	N/A
PHROG	UHGV-0015834_5	phrog_20016	71.1	1.2e-20	N/A	unknown function
eggNOG-mapper	UHGV-0015834_5	476272.RUMHYD_01956	55.1	0.000000134	N/A	N/A
structural_annotation	UHGV-0015834_5	PF00386,NF033147	N/A	N/A	N/A	N/A
PHROG	UHGV-0015834_6	phrog_16490	93.6	5.6e-28	N/A	unknown function
eggNOG-mapper	UHGV-0015834_6	397290.C810_01328	105.0	7.78e-24	N/A	N/A
eggNOG-mapper	UHGV-0015834_8	397290.C810_01326	52.8	0.00000116	N/A	N/A
eggNOG-mapper	UHGV-0015834_9	469596.HMPREF9488_02013	60.5	0.0000000795	metallopeptidase activity	N/A
Pfam	UHGV-0015834_9	PF09479	N/A	N/A	Listeria-Bacteroides repeat domain (List_Bact_rpt)	Flg_new
NCBIFam	UHGV-0015834_9	TIGR02543.1	N/A	N/A	TIGR02543 family repeat protein	N/A
COG	UHGV-0015834_9	COG3291	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0015834_9	PF10651	N/A	N/A	N/A	N/A
PHROG	UHGV-0015834_10	phrog_1067	79.8	8.5e-24	minor head protein	head and packaging
eggNOG-mapper	UHGV-0015834_10	1123263.AUKY01000068_gene489	81.3	0.000000000000222	Phage minor structural protein	N/A
Pfam	UHGV-0015834_10	PF06605	N/A	N/A	Prophage endopeptidase tail	Prophage_tail
NCBIFam	UHGV-0015834_10	TIGR01665.1	N/A	N/A	phage tail spike protein	N/A
COG	UHGV-0015834_10	COG4926	N/A	N/A	Phage-related protein	N/A
PHROG	UHGV-0015834_11	phrog_33	60.0	6.6e-17	distal tail protein Dit	tail
UniRef90	UHGV-0015834_11	UniRef90_A0A173Z1X4	181.0	0	Phage-related protein	N/A
eggNOG-mapper	UHGV-0015834_11	1123263.AUKY01000068_gene490	93.6	4.43e-20	tail component	N/A
COG	UHGV-0015834_11	COG4722	N/A	N/A	Phage-related protein YomH	N/A
structural_annotation	UHGV-0015834_11	PF20195,TIGR01633,COG4722	N/A	N/A	N/A	N/A
PHROG	UHGV-0015834_12	phrog_4372	386.6	0	tail length tape measure protein	tail
UniRef90	UHGV-0015834_12	UniRef90_UPI0018AC889D	657.0	0	tape measure protein	N/A
eggNOG-mapper	UHGV-0015834_12	478749.BRYFOR_08513	657.0	0	Peptidoglycan-binding domain 1 protein	N/A
Pfam	UHGV-0015834_12	PF08230	N/A	N/A	CW_7 repeat	CW_7
COG	UHGV-0015834_12	COG3409	N/A	N/A	Peptidoglycan-binding (PGRP) domain of peptidoglycan hydrolases	N/A
UniRef90	UHGV-0015834_13	UniRef90_A0A373NV95	150.0	1.96182e-44	HK97 gp10 family phage protein	N/A
eggNOG-mapper	UHGV-0015834_13	742740.HMPREF9474_02263	143.0	1.23034e-42	Bacteriophage HK97-gp10, putative tail-component	N/A
Pfam	UHGV-0015834_13	PF04883	N/A	N/A	Bacteriophage HK97-gp10, putative tail-component	HK97-gp10_like
structural_annotation	UHGV-0015834_13	TIGR01725	N/A	N/A	N/A	N/A
KOfam	UHGV-0015834_14	K19304	129.5	3.3e-38	mepM; murein DD-endopeptidase [EC:3.4.24.-]	N/A
PHROG	UHGV-0015834_14	phrog_10030	99.2	1.8e-29	tail length tape measure protein	tail
UniRef90	UHGV-0015834_14	UniRef90_A0A3D1PRD1	275.0	0	Peptidase_M23 domain-containing protein	N/A
eggNOG-mapper	UHGV-0015834_14	555079.Toce_1689	105.0	4.33e-24	PFAM Peptidase M23	N/A
Pfam	UHGV-0015834_14	PF01551	N/A	N/A	Peptidase family M23	Peptidase_M23
COG	UHGV-0015834_14	COG4942	N/A	N/A	Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB	N/A
structural_annotation	UHGV-0015834_14	PF01551,NF040883	N/A	N/A	N/A	N/A
PHROG	UHGV-0015834_15	phrog_4338	201.6	0	N/A	unknown function
eggNOG-mapper	UHGV-0015834_15	742740.HMPREF9474_02265	157.0	0	N/A	N/A
PHROG	UHGV-0015834_16	phrog_4282	137.4	7.30006e-41	N/A	unknown function
eggNOG-mapper	UHGV-0015834_16	428125.CLOLEP_01416	111.0	1.06e-29	N/A	N/A
PHROG	UHGV-0015834_17	phrog_2645	326.1	0	major tail protein	tail
UniRef90	UHGV-0015834_17	UniRef90_A0A5J6TGG1	263.0	0	Major capsid protein	N/A
eggNOG-mapper	UHGV-0015834_17	742740.HMPREF9474_02267	256.0	0	N/A	N/A
structural_annotation	UHGV-0015834_17	PF06488,TIGR01603,COG5437	N/A	N/A	N/A	N/A
PHROG	UHGV-0015834_18	phrog_78	47.7	0.00000000000029	tail terminator	connector
UniRef90	UHGV-0015834_18	UniRef90_A0A6M3SX82	97.1	3.93e-24	Tail terminator	N/A
eggNOG-mapper	UHGV-0015834_18	691965.D4P7D8_9CAUD	94.7	6.18e-24	N/A	N/A
structural_annotation	UHGV-0015834_18	PF20765	N/A	N/A	N/A	N/A
PHROG	UHGV-0015834_19	phrog_4270	133.5	5.19999e-40	N/A	unknown function
eggNOG-mapper	UHGV-0015834_19	742733.HMPREF9469_05028	133.0	4.29e-39	N/A	N/A
structural_annotation	UHGV-0015834_19	PF07405,TIGR01563,COG5614	N/A	N/A	N/A	N/A
KOfam	UHGV-0015834_20	K06904	67.5	1.8e-19	N/A	N/A
PHROG	UHGV-0015834_20	phrog_3270	718.9	0	head maturation protease	head and packaging
UniRef90	UHGV-0015834_20	UniRef90_D4N0R6	590.0	0	Phage capsid family./Caudovirus prohead protease	N/A
eggNOG-mapper	UHGV-0015834_20	428125.CLOLEP_01412	449.0	0	Caudovirus prohead serine protease	N/A
Pfam	UHGV-0015834_20	PF04586	N/A	N/A	Caudovirus prohead serine protease	Peptidase_S78
Pfam	UHGV-0015834_20	PF05065	N/A	N/A	Phage capsid family	Phage_capsid
structural_annotation	UHGV-0015834_20	PF04586,PF06673,TIGR01543,TIGR01554,COG3740,COG4653	N/A	N/A	N/A	N/A
PHROG	UHGV-0015834_21	phrog_12	122.5	2.9e-36	portal protein	head and packaging
UniRef90	UHGV-0015834_21	UniRef90_A0A174YU68	559.0	0	Phage portal protein, HK97 family	N/A
eggNOG-mapper	UHGV-0015834_21	411460.RUMTOR_01348	585.0	0	Phage portal protein	N/A
Pfam	UHGV-0015834_21	PF04860	N/A	N/A	Phage portal protein	Phage_portal
structural_annotation	UHGV-0015834_21	PF04860,MF_04135,TIGR01537,COG4695	N/A	N/A	N/A	N/A
PHROG	UHGV-0015834_22	phrog_9151	76.7	2.5e-22	HicB-like antitoxin	moron, auxiliary metabolic gene and host takeover
UniRef90	UHGV-0015834_22	UniRef90_UPI00177F3433	79.7	6.46e-17	type II toxin-antitoxin system HicB family antitoxin	N/A
eggNOG-mapper	UHGV-0015834_22	103690.17134415	74.7	7.08e-16	HicB family	N/A
COG	UHGV-0015834_22	COG4226	N/A	N/A	Predicted nuclease of the RNAse H fold, HicB family	N/A
structural_annotation	UHGV-0015834_22	PF21748,COG4226	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0015834_23	1232452.BAIB02000007_gene1610	71.2	0.000000000114	N/A	N/A
structural_annotation	UHGV-0015834_23	PF10651	N/A	N/A	N/A	N/A
PHROG	UHGV-0015834_24	phrog_19695	73.7	3.9e-21	N/A	unknown function
eggNOG-mapper	UHGV-0015834_24	411462.DORLON_00772	65.1	0.00000000000205	N/A	N/A
structural_annotation	UHGV-0015834_24	PF19714	N/A	N/A	N/A	N/A
PHROG	UHGV-0015834_25	phrog_9	247.7	0	terminase large subunit	head and packaging
UniRef90	UHGV-0015834_25	UniRef90_UPI001D05F004	954.0	0	terminase large subunit	N/A
eggNOG-mapper	UHGV-0015834_25	665956.HMPREF1032_00672	945.0	0	Phage Terminase	N/A
Pfam	UHGV-0015834_25	PF20441	N/A	N/A	Terminase large subunit, endonuclease domain	TerL_nuclease
COG	UHGV-0015834_25	COG4626	N/A	N/A	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	N/A
structural_annotation	UHGV-0015834_25	PF20441,PF03354,MF_04146,TIGR01547,COG4626	N/A	N/A	N/A	N/A
PHROG	UHGV-0015834_26	phrog_7021	52.3	0.000000000000008	N/A	unknown function
eggNOG-mapper	UHGV-0015834_26	665956.HMPREF1032_00671	63.5	0.0000000000709	N/A	N/A
PHROG	UHGV-0015834_27	phrog_4247	158.0	0	virion structural protein	head and packaging
UniRef90	UHGV-0015834_27	UniRef90_D4P7C3	130.0	8.68e-37	Structural protein	N/A
eggNOG-mapper	UHGV-0015834_27	428125.CLOLEP_01407	144.0	3.0268e-43	N/A	N/A
PHROG	UHGV-0015834_28	phrog_4321	197.4	0	HNH endonuclease	DNA, RNA and nucleotide metabolism
eggNOG-mapper	UHGV-0015834_28	411460.RUMTOR_01352	182.0	0	N/A	N/A
PHROG	UHGV-0015834_29	phrog_4259	114.3	5.1e-34	N/A	unknown function
eggNOG-mapper	UHGV-0015834_29	742733.HMPREF9469_05037	93.6	2.46e-23	N/A	N/A
PHROG	UHGV-0015834_30	phrog_4303	96.7	1.1e-28	N/A	unknown function
eggNOG-mapper	UHGV-0015834_30	478749.BRYFOR_08533	87.4	2.63e-21	N/A	N/A
PHROG	UHGV-0015834_31	phrog_4291	1202.4	0	RNA-dependent RNA polymerase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0015834_31	UniRef90_A0A372V7J1	1082.0	0	Helix-turn-helix domain-containing protein	N/A
eggNOG-mapper	UHGV-0015834_31	742740.HMPREF9474_02278	1061.0	0	N/A	N/A
Pfam	UHGV-0015834_31	PF13384	N/A	N/A	Homeodomain-like domain	HTH_23
structural_annotation	UHGV-0015834_31	PF05183	N/A	N/A	N/A	N/A
PHROG	UHGV-0015834_32	phrog_3953	157.9	0	exonuclease	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0015834_32	UniRef90_A0A374ABF7	226.0	0	N/A	N/A
eggNOG-mapper	UHGV-0015834_32	411460.RUMTOR_01357	179.0	0	N/A	N/A
Pfam	UHGV-0015834_32	PF10926	N/A	N/A	N/A	DUF2800
structural_annotation	UHGV-0015834_32	PF10926,MF_03030,TIGR00372,COG2887	N/A	N/A	N/A	N/A
UniRef90	UHGV-0015834_33	UniRef90_A0A4D6E4Q9	122.0	1.81e-34	Hydrolase	N/A
eggNOG-mapper	UHGV-0015834_33	742740.HMPREF9474_02280	124.0	5.11e-36	N/A	N/A
structural_annotation	UHGV-0015834_33	PF01870,COG1591	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0015834_34	PF09297	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0015834_35	511051.CSE_14330	51.2	0.00000224	sequence-specific DNA binding	N/A
Pfam	UHGV-0015834_35	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
COG	UHGV-0015834_35	COG1396	N/A	N/A	Transcriptional regulator, contains XRE-family HTH domain	N/A
PHROG	UHGV-0015834_36	phrog_6568	61.3	1.1e-17	N/A	unknown function
eggNOG-mapper	UHGV-0015834_36	428125.CLOLEP_01394	80.5	3.78e-19	N/A	N/A

All viral genomes

ID	Representative?	Length (bps)	% GC Content	CheckV Completeness	geNomad Score
UHGV-0015834	Yes	32,895	42	54	1