vOTU vOTU-104612

vOTU: vOTU-104612

Overview

Genome (FASTA) Annotation Track (GFF) Proteins (FASTA) Protein Annotation (TSV)

Cluster properties
vOTU ID	vOTU-104612
Number of genomes	1
Taxonomy (ICTV)	Bacteria → Firmicutes_A → Clostridia → Oscillospirales → Oscillospiraceae → CAG-170
Taxonomy (UHGV)	vFAM-00005 → vSUBFAM-00060 → vGENUS-00089 → vOTU-104612
Host lineage	Bacteria → Firmicutes_A → Clostridia → Oscillospirales → Oscillospiraceae → CAG-170 → CAG-170 sp000432135
Host range breadth	Species
Lifestyle	temperate (Evidence: BACPHLIP)

Representative genome
Genome ID	UHGV-0115410
Biosample ID	SAMEA4378301
Genome length (bp)	34,755 bps
CheckV completeness	82.96% (Medium-quality)
CDS count	47
CDS density	93.66%
tRNA count	0
Integrase	No
Viral confidence	Confident

Host assignment details
Assignment method	CRISPR
CRISPR-predicted host lineage	Bacteria → Firmicutes_A → Clostridia → Oscillospirales → Oscillospiraceae → CAG-170 → CAG-170 sp000432135	Total connections	185	Host agreement	93.51
PHIST-predicted host lineage	Bacteria → Firmicutes_A → Clostridia → Oscillospirales → Oscillospiraceae → CAG-170	Total connections	20	Host agreement	85

Representative genome content

Select to view: Genome Viewer Functional Annotation

Genome view (completeness: 82.96)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
UniRef90	UHGV-0115410_1	UniRef90_A0A3D2FXU4	82.0	3.33e-16	Iron ABC transporter ATP-binding protein (Fragment)	N/A
eggNOG-mapper	UHGV-0115410_1	888727.HMPREF9092_0381	112.0	1.64e-27	Abc transporter	N/A
COG	UHGV-0115410_1	COG1120	N/A	N/A	ABC-type cobalamin/Fe3+-siderophores transport system, ATPase component	N/A
KOfam	UHGV-0115410_2	K03502	281.2	0	umuC; DNA polymerase V	N/A
PHROG	UHGV-0115410_2	phrog_1268	81.5	4.5e-36	DNA polymerase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0115410_2	UniRef90_R5INW7	685.0	0	Nucleotidyltransferase/DNA polymerase involved in DNA repair	N/A
eggNOG-mapper	UHGV-0115410_2	1487923.DP73_21635	448.0	0	Nucleotidyltransferase DNA polymerase involved in DNA repair	N/A
Pfam	UHGV-0115410_2	PF11799	N/A	N/A	impB/mucB/samB family C-terminal domain	IMS_C
COG	UHGV-0115410_2	COG0389	N/A	N/A	Nucleotidyltransferase/DNA polymerase DinP involved in DNA repair	N/A
KOfam	UHGV-0115410_3	K06400	248.6	0	spoIVCA; site-specific DNA recombinase	N/A
PHROG	UHGV-0115410_3	phrog_95	266.2	0	integrase	integration and excision
UniRef90	UHGV-0115410_3	UniRef90_A0A3A9FR25	416.0	0	Recombinase family protein	N/A
eggNOG-mapper	UHGV-0115410_3	1121335.Clst_2051	404.0	0	Resolvase, N terminal domain	N/A
Pfam	UHGV-0115410_3	PF00239	N/A	N/A	Resolvase, N terminal domain	Resolvase
Pfam	UHGV-0115410_3	PF07508	N/A	N/A	Recombinase	Recombinase
Pfam	UHGV-0115410_3	PF13408	N/A	N/A	Recombinase zinc beta ribbon domain	Zn_ribbon_recom
COG	UHGV-0115410_3	COG1961	N/A	N/A	Site-specific DNA recombinase SpoIVCA/DNA invertase PinE	N/A
structural_annotation	UHGV-0115410_3	PF07508,PF00239,NF041201,COG1961	N/A	N/A	N/A	N/A
KOfam	UHGV-0115410_4	K22299	48.6	0.00000000000019	rghR; HTH-type transcriptional regulator, competence development regulator	N/A
Pfam	UHGV-0115410_4	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
COG	UHGV-0115410_4	COG1813	N/A	N/A	Archaeal ribosome-binding protein aMBF1, putative translation factor, contains Zn-ribbon and HTH domains	N/A
structural_annotation	UHGV-0115410_4	PF13560,MF_00535,TIGR03070,COG1396	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0115410_6	246194.CHY_1698	55.1	0.00000779	Staphylococcal nuclease homologue	N/A
Pfam	UHGV-0115410_6	PF02805	N/A	N/A	Metal binding domain of Ada	Ada_Zn_binding
COG	UHGV-0115410_6	COG1525	N/A	N/A	Endonuclease YncB, thermonuclease family	N/A
KOfam	UHGV-0115410_7	K22300	50.0	0.000000000000069	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	N/A
PHROG	UHGV-0115410_7	phrog_2967	43.2	0.0000000000069	transcriptional regulator	transcription regulation
UniRef90	UHGV-0115410_7	UniRef90_G9YR83	109.0	2.13e-28	DNA-binding helix-turn-helix protein	N/A
eggNOG-mapper	UHGV-0115410_7	748224.HMPREF9436_01444	102.0	3.83e-26	N/A	N/A
Pfam	UHGV-0115410_7	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
COG	UHGV-0115410_7	COG1396	N/A	N/A	Transcriptional regulator, contains XRE-family HTH domain	N/A
structural_annotation	UHGV-0115410_7	PF01381,MF_00535,NF041951,COG1476	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0115410_9	PF15188,NF010673	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0115410_11	642492.Clole_0961	69.7	0.00000000000000757	N/A	N/A
structural_annotation	UHGV-0115410_11	PF12286	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0115410_12	PF10548	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0115410_16	PF05082	N/A	N/A	N/A	N/A
PHROG	UHGV-0115410_19	phrog_599	50.5	0.000000000000047	Lar-like restriction alleviation protein	moron, auxiliary metabolic gene and host takeover
UniRef90	UHGV-0115410_19	UniRef90_A0A412AV49	105.0	2.73e-28	Restriction alleviation protein, Lar family	N/A
eggNOG-mapper	UHGV-0115410_19	1235790.C805_00069	58.9	0.000000000156	Restriction alleviation protein Lar	N/A
Pfam	UHGV-0115410_19	PF14354	N/A	N/A	Restriction alleviation protein Lar	Lar_restr_allev
NCBIFam	UHGV-0115410_19	TIGR03655.1	N/A	N/A	Lar family restriction alleviation protein	N/A
dbAPIS	UHGV-0115410_19	APIS033	N/A	N/A	Lar is functionally similar to RaI, is able to alleviate restriction and enhance modification by EcoKI. And the nucleotide sequences of their genes share 47% identity, indicating a common origin.	N/A
structural_annotation	UHGV-0115410_19	PF14354,TIGR03655	N/A	N/A	N/A	N/A
Pfam	UHGV-0115410_23	PF01355	N/A	N/A	High potential iron-sulfur protein	HIPIP
PHROG	UHGV-0115410_24	phrog_190	99.9	2.7e-29	Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0115410_24	UniRef90_UPI0006C2AC63	132.0	9.95e-37	N/A	N/A
eggNOG-mapper	UHGV-0115410_24	1226322.HMPREF1545_00295	117.0	2.86e-31	N/A	N/A
Pfam	UHGV-0115410_24	PF06356	N/A	N/A	N/A	DUF1064
structural_annotation	UHGV-0115410_24	PF06356	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0115410_26	PF10013	N/A	N/A	N/A	N/A
PHROG	UHGV-0115410_30	phrog_21498	295.7	0	N/A	unknown function
eggNOG-mapper	UHGV-0115410_30	78346.BRUM_0376	262.0	0	DNA binding	N/A
COG	UHGV-0115410_30	COG1475	N/A	N/A	Chromosome segregation protein Spo0J, contains ParB-like nuclease domain	N/A
structural_annotation	UHGV-0115410_30	PF05869,TIGR01712	N/A	N/A	N/A	N/A
PHROG	UHGV-0115410_31	phrog_3584	114.5	8.8e-34	replication initiation protein	DNA, RNA and nucleotide metabolism
eggNOG-mapper	UHGV-0115410_31	537013.CLOSTMETH_02141	70.5	0.0000000000047	N/A	N/A
structural_annotation	UHGV-0115410_31	PF21578,MF_00360	N/A	N/A	N/A	N/A
PHROG	UHGV-0115410_33	phrog_606	74.1	2.1e-21	terminase small subunit	head and packaging
UniRef90	UHGV-0115410_33	UniRef90_UPI001F487344	125.0	3.92e-34	DNA-packaging protein	N/A
eggNOG-mapper	UHGV-0115410_33	397290.C810_05185	126.0	8e-35	DNA-packaging protein gp3	N/A
Pfam	UHGV-0115410_33	PF16677	N/A	N/A	DNA-packaging protein gp3	GP3_package
structural_annotation	UHGV-0115410_33	PF16677	N/A	N/A	N/A	N/A
KOfam	UHGV-0115410_34	K06909	146.6	2.20004e-43	xtmB; phage terminase large subunit	N/A
PHROG	UHGV-0115410_34	phrog_979	134.6	4.39994e-41	terminase large subunit	head and packaging
UniRef90	UHGV-0115410_34	UniRef90_A0A810Q5R0	645.0	0	Phage terminase large subunit	N/A
eggNOG-mapper	UHGV-0115410_34	1410650.JHWL01000003_gene2834	639.0	0	N/A	N/A
Pfam	UHGV-0115410_34	PF03237	N/A	N/A	Terminase large subunit, T4likevirus-type, N-terminal	Terminase_6N
COG	UHGV-0115410_34	COG1783	N/A	N/A	Phage terminase large subunit	N/A
structural_annotation	UHGV-0115410_34	PF04466,PF20454,MF_04148,TIGR01547,COG1783	N/A	N/A	N/A	N/A
PHROG	UHGV-0115410_35	phrog_511	235.2	0	internal virion protein	head and packaging
eggNOG-mapper	UHGV-0115410_35	1410650.JHWL01000003_gene2827	322.0	0	N/A	N/A
structural_annotation	UHGV-0115410_35	PF11134,TIGR03300,NF038126,COG1520	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0115410_36	537007.BLAHAN_05255	60.8	0.000000442	N/A	N/A
PHROG	UHGV-0115410_39	phrog_156	299.9	0	portal protein	head and packaging
eggNOG-mapper	UHGV-0115410_39	1410650.JHWL01000003_gene2833	544.0	0	N/A	N/A
structural_annotation	UHGV-0115410_39	PF16510,MF_04120,TIGR01538,COG4383	N/A	N/A	N/A	N/A
PHROG	UHGV-0115410_40	phrog_13908	151.5	5.60519e-45	N/A	unknown function
eggNOG-mapper	UHGV-0115410_40	1410650.JHWL01000003_gene2831	105.0	9.67e-24	N/A	N/A
PHROG	UHGV-0115410_41	phrog_1357	217.3	0	major head protein	head and packaging
UniRef90	UHGV-0115410_41	UniRef90_A0A2V2CFL5	401.0	0	N4-gp56 family major capsid protein	N/A
eggNOG-mapper	UHGV-0115410_41	1410650.JHWL01000003_gene2830	276.0	0	N/A	N/A
Pfam	UHGV-0115410_41	PF13252	N/A	N/A	N/A	DUF4043
NCBIFam	UHGV-0115410_41	TIGR04387.1	N/A	N/A	N4-gp56 family major capsid protein	N/A
structural_annotation	UHGV-0115410_41	PF13252,MF_04119,TIGR04387,COG4653	N/A	N/A	N/A	N/A
PHROG	UHGV-0115410_43	phrog_12105	126.2	1.7e-37	N/A	unknown function
eggNOG-mapper	UHGV-0115410_43	1226322.HMPREF1545_03850	63.9	0.000000000026	N/A	N/A
UniRef90	UHGV-0115410_44	UniRef90_R5DCX9	187.0	0	PG_binding_1 domain-containing protein	N/A
eggNOG-mapper	UHGV-0115410_44	1410650.JHWL01000003_gene2815	136.0	4.31e-33	N/A	N/A
PHROG	UHGV-0115410_45	phrog_22978	132.1	7.56701e-44	N/A	unknown function
eggNOG-mapper	UHGV-0115410_45	1408437.JNJN01000039_gene389	485.0	0	heme binding	N/A
COG	UHGV-0115410_45	COG0739	N/A	N/A	Murein DD-endopeptidase MepM and murein hydrolase activator NlpD, contains LysM domain	N/A
structural_annotation	UHGV-0115410_46	PF18962,NF011773	N/A	N/A	N/A	N/A

All viral genomes

ID	Representative?	Length (bps)	% GC Content	CheckV Completeness	geNomad Score
UHGV-0115410	Yes	34,755	58	83	1