vOTU vOTU-104613

vOTU: vOTU-104613

Overview

Genome (FASTA) Annotation Track (GFF) Proteins (FASTA) Protein Annotation (TSV)

Cluster properties
vOTU ID	vOTU-104613
Number of genomes	1
Taxonomy (ICTV)	Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes
Taxonomy (UHGV)	vFAM-00003 → vSUBFAM-00381 → vGENUS-00754 → vOTU-104613
Host lineage	Bacteria → Firmicutes_A → Clostridia → Oscillospirales → Ruminococcaceae → Gemmiger → Gemmiger formicilis
Host range breadth	Species
Lifestyle	temperate (evidence: BACPHLIP)

Representative genome
Genome ID	UHGV-0115413
Biosample ID	SAMEA4378301
Genome length (bp)	21,084 bps
CheckV completeness	60.37% (Medium-quality)
CDS count	31
CDS density	92.00%
tRNA count	0
Integrase	No
Viral confidence	Confident

Host assignment details
Assignment method	PHIST
CRISPR-predicted host lineage	Bacteria → Firmicutes_A → Clostridia → Oscillospirales → Ruminococcaceae → Gemmiger	Total connections	26	Host agreement	96.15
PHIST-predicted host lineage	Bacteria → Firmicutes_A → Clostridia → Oscillospirales → Ruminococcaceae → Gemmiger → Gemmiger formicilis	Total connections	279	Host agreement	98.57

Representative genome content

Select to view: Genome Viewer Functional Annotation

Genome view (completeness: 60.37)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
PHROG	UHGV-0115413_1	phrog_38135	71.4	1.1e-20	N/A	unknown function
UniRef90	UHGV-0115413_1	UniRef90_A0A1Q6T359	308.0	0	N/A	N/A
eggNOG-mapper	UHGV-0115413_1	742723.HMPREF9477_00941	91.7	1.82e-19	dextransucrase activity	N/A
Pfam	UHGV-0115413_1	PF14020	N/A	N/A	N/A	DUF4236
COG	UHGV-0115413_1	COG3118	N/A	N/A	Chaperedoxin CnoX, contains thioredoxin-like and TPR-like domains, YbbN/TrxSC family	N/A
structural_annotation	UHGV-0115413_1	PF14020,PF05154	N/A	N/A	N/A	N/A
KOfam	UHGV-0115413_2	K01356	158.9	0	lexA; repressor LexA [EC:3.4.21.88]	N/A
PHROG	UHGV-0115413_2	phrog_4	126.4	2.8e-37	transcriptional repressor	transcription regulation
UniRef90	UHGV-0115413_2	UniRef90_A0A6N8H052	285.0	0	Helix-turn-helix domain-containing protein	N/A
eggNOG-mapper	UHGV-0115413_2	411483.FAEPRAA2165_03041	211.0	0	N/A	N/A
Pfam	UHGV-0115413_2	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
Pfam	UHGV-0115413_2	PF00717	N/A	N/A	Peptidase S24-like	Peptidase_S24
COG	UHGV-0115413_2	COG1974	N/A	N/A	SOS-response transcriptional repressor LexA (RecA-mediated autopeptidase)	N/A
structural_annotation	UHGV-0115413_2	PF00717,PF01381,MF_00015,TIGR00498,COG2932	N/A	N/A	N/A	N/A
UniRef90	UHGV-0115413_3	UniRef90_A0A2J4JRR6	81.3	7.7e-19	Toxin-antitoxin system, antitoxin component, Xre family protein	N/A
eggNOG-mapper	UHGV-0115413_3	887929.HMP0721_1290	55.1	0.0000000035	Helix-turn-helix domain of resolvase	N/A
structural_annotation	UHGV-0115413_3	PF05339,NF041951,COG3655	N/A	N/A	N/A	N/A
KOfam	UHGV-0115413_4	K22300	48.8	0.00000000000015	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	N/A
PHROG	UHGV-0115413_4	phrog_3	45.4	0.0000000000035	transcriptional repressor	transcription regulation
UniRef90	UHGV-0115413_4	UniRef90_A0A1M6TSX9	75.1	0.0000000000000044	Helix-turn-helix	N/A
eggNOG-mapper	UHGV-0115413_4	556261.HMPREF0240_01268	73.6	0.00000000000000476	Helix-turn-helix	N/A
Pfam	UHGV-0115413_4	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
COG	UHGV-0115413_4	COG1396	N/A	N/A	Transcriptional regulator, contains XRE-family HTH domain	N/A
structural_annotation	UHGV-0115413_4	PF13560,MF_00535,NF007257,COG1396	N/A	N/A	N/A	N/A
PHROG	UHGV-0115413_7	phrog_10280	53.2	0.000000000000003	N/A	unknown function
eggNOG-mapper	UHGV-0115413_7	742738.HMPREF9460_02068	61.6	0.0000000239	N/A	N/A
COG	UHGV-0115413_8	COG4712	N/A	N/A	Predicted ssDNA annealing protein, contains HHH motif, Rad42/Rad22/RecT/erf family	N/A
structural_annotation	UHGV-0115413_8	PF04098,TIGR00607,COG4712	N/A	N/A	N/A	N/A
PHROG	UHGV-0115413_9	phrog_72	49.0	0.000000000000098	NinB/ Orf homologous recombination mediator	DNA, RNA and nucleotide metabolism
eggNOG-mapper	UHGV-0115413_9	411471.SUBVAR_05829	216.0	0	N/A	N/A
structural_annotation	UHGV-0115413_9	PF05772,NF007281	N/A	N/A	N/A	N/A
COG	UHGV-0115413_10	COG1327	N/A	N/A	Transcriptional regulator NrdR, contains Zn-ribbon and ATP-cone domains	N/A
structural_annotation	UHGV-0115413_10	PF04606,NF007241	N/A	N/A	N/A	N/A
PHROG	UHGV-0115413_11	phrog_7566	76.6	2.3e-22	N/A	unknown function
eggNOG-mapper	UHGV-0115413_11	411471.SUBVAR_05830	114.0	5.88e-32	N/A	N/A
PHROG	UHGV-0115413_12	phrog_997	113.6	1.3e-33	replication terminator	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0115413_12	UniRef90_UPI001165C3F9	80.5	4.78e-17	replication terminator protein	N/A
eggNOG-mapper	UHGV-0115413_12	411471.SUBVAR_05832	156.0	0	N/A	N/A
PHROG	UHGV-0115413_13	phrog_1029	200.8	0	N/A	unknown function
eggNOG-mapper	UHGV-0115413_13	411471.SUBVAR_05833	235.0	0	N/A	N/A
structural_annotation	UHGV-0115413_13	PF10065,COG5532	N/A	N/A	N/A	N/A
KOfam	UHGV-0115413_14	K03111	130.5	2.1e-38	ssb; single-strand DNA-binding protein	N/A
PHROG	UHGV-0115413_14	phrog_44	134.3	8.7e-40	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0115413_14	UniRef90_A0A1Q6T3F1	291.0	0	Single-stranded DNA-binding protein	N/A
eggNOG-mapper	UHGV-0115413_14	411471.SUBVAR_04646	184.0	0	Single-stranded DNA-binding protein	N/A
Pfam	UHGV-0115413_14	PF00436	N/A	N/A	Single-strand binding protein family	SSB
NCBIFam	UHGV-0115413_14	TIGR00621.2	N/A	N/A	single-stranded DNA-binding protein	N/A
COG	UHGV-0115413_14	COG0629	N/A	N/A	Single-stranded DNA-binding protein	N/A
HAMAP	UHGV-0115413_14	MF_00984	N/A	N/A	Single-stranded DNA-binding protein	N/A
structural_annotation	UHGV-0115413_14	PF00436,MF_00984,NF005241,COG0629	N/A	N/A	N/A	N/A
PHROG	UHGV-0115413_15	phrog_678	85.0	1.3e-24	replication initiation O-like	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0115413_15	UniRef90_A0A6N8H2D2	261.0	0	Helix-turn-helix domain-containing protein	N/A
eggNOG-mapper	UHGV-0115413_15	411471.SUBVAR_05835	214.0	0	Helix-turn-helix domain	N/A
Pfam	UHGV-0115413_15	PF13730	N/A	N/A	Helix-turn-helix domain	HTH_36
COG	UHGV-0115413_15	COG3935	N/A	N/A	DNA replication protein DnaD	N/A
structural_annotation	UHGV-0115413_15	PF13730,MF_01909,TIGR04176,COG3355	N/A	N/A	N/A	N/A
KOfam	UHGV-0115413_16	K02314	227.5	0	dnaB; replicative DNA helicase [EC:5.6.2.3]	N/A
PHROG	UHGV-0115413_16	phrog_19	214.2	0	DnaB-like replicative helicase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0115413_16	UniRef90_A0A1Q6T363	694.0	0	DNA helicase	N/A
eggNOG-mapper	UHGV-0115413_16	411471.SUBVAR_05838	410.0	0	Participates in initiation and elongation during chromosome replication	N/A
Pfam	UHGV-0115413_16	PF00772	N/A	N/A	DnaB-like helicase N terminal domain	DnaB
Pfam	UHGV-0115413_16	PF03796	N/A	N/A	DnaB-like helicase C terminal domain	DnaB_C
COG	UHGV-0115413_16	COG0305	N/A	N/A	Replicative DNA helicase	N/A
structural_annotation	UHGV-0115413_16	PF03796,PF00772,MF_04155,TIGR00665,COG0305	N/A	N/A	N/A	N/A
KOfam	UHGV-0115413_17	K03496	222.4	0	parA, soj; chromosome partitioning protein	N/A
PHROG	UHGV-0115413_17	phrog_164	165.4	0	ParA-like partition protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0115413_17	UniRef90_A0A1Q6T3I8	511.0	0	AAA_31 domain-containing protein	N/A
eggNOG-mapper	UHGV-0115413_17	411471.SUBVAR_05839	279.0	0	AAA domain	N/A
Pfam	UHGV-0115413_17	PF13614	N/A	N/A	AAA domain	AAA_31
COG	UHGV-0115413_17	COG1192	N/A	N/A	ParA-like ATPase involved in chromosome/plasmid partitioning or cellulose biosynthesis protein BcsQ	N/A
structural_annotation	UHGV-0115413_17	PF13614,MF_00533,TIGR03453,COG1192	N/A	N/A	N/A	N/A
KOfam	UHGV-0115413_18	K03497	92.0	1.1e-26	parB, spo0J; ParB family transcriptional regulator, chromosome partitioning protein	N/A
PHROG	UHGV-0115413_18	phrog_4715	134.0	3.5e-40	ParB-like partition protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0115413_18	UniRef90_A0A1Q6T350	823.0	0	ParB domain-containing protein	N/A
eggNOG-mapper	UHGV-0115413_18	411471.SUBVAR_05842	375.0	0	ParB-like nuclease domain	N/A
Pfam	UHGV-0115413_18	PF02195	N/A	N/A	ParB/Sulfiredoxin domain	ParBc
COG	UHGV-0115413_18	COG1475	N/A	N/A	Chromosome segregation protein Spo0J, contains ParB-like nuclease domain	N/A
structural_annotation	UHGV-0115413_18	PF02195,MF_02015,TIGR04285,COG1475	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0115413_20	1297617.JPJD01000059_gene2640	138.0	3.15001e-40	N/A	N/A
structural_annotation	UHGV-0115413_20	PF06530,TIGR01636	N/A	N/A	N/A	N/A
PHROG	UHGV-0115413_21	phrog_1281	127.5	6.9e-38	N/A	unknown function
UniRef90	UHGV-0115413_21	UniRef90_UPI00130E304C	157.0	0	N/A	N/A
eggNOG-mapper	UHGV-0115413_21	1321815.HMPREF9193_02066	134.0	2.71e-38	N/A	N/A
Pfam	UHGV-0115413_21	PF13274	N/A	N/A	Antitoxin SocA-like, Panacea domain	SocA_Panacea
COG	UHGV-0115413_21	COG3600	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0115413_21	PF13274,COG3600	N/A	N/A	N/A	N/A
PHROG	UHGV-0115413_22	phrog_5763	50.3	0.0000000000000044	N/A	unknown function
eggNOG-mapper	UHGV-0115413_22	999413.HMPREF1094_00199	103.0	2.03e-22	N/A	N/A
PHROG	UHGV-0115413_23	phrog_338	53.1	0.0000000000000067	HNH endonuclease	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0115413_23	UniRef90_UPI0015F33F36	204.0	0	HNH endonuclease	N/A
eggNOG-mapper	UHGV-0115413_23	748224.HMPREF9436_01465	204.0	0	N/A	N/A
UniRef90	UHGV-0115413_24	UniRef90_R6GFM0	75.1	5.71e-16	Conserved domain protein	N/A
structural_annotation	UHGV-0115413_24	PF19962	N/A	N/A	N/A	N/A
PHROG	UHGV-0115413_25	phrog_9	166.1	0	terminase large subunit	head and packaging
UniRef90	UHGV-0115413_25	UniRef90_UPI001F1A3C47	631.0	0	terminase large subunit	N/A
eggNOG-mapper	UHGV-0115413_25	748224.HMPREF9436_01467	765.0	0	phage terminase, large subunit	N/A
COG	UHGV-0115413_25	COG4626	N/A	N/A	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	N/A
structural_annotation	UHGV-0115413_25	PF20441,PF03354,MF_04146,NF033889,COG4626	N/A	N/A	N/A	N/A
PHROG	UHGV-0115413_26	phrog_104	223.2	0	portal protein	head and packaging
UniRef90	UHGV-0115413_26	UniRef90_A0A3E2U200	708.0	0	Phage portal protein	N/A
eggNOG-mapper	UHGV-0115413_26	748224.HMPREF9436_01468	699.0	0	Phage portal protein, SPP1 Gp6-like	N/A
Pfam	UHGV-0115413_26	PF05133	N/A	N/A	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
Pfam	UHGV-0115413_26	PF13671	N/A	N/A	AAA domain	AAA_33
PHROG	UHGV-0115413_27	phrog_193	125.1	7.1e-37	head maturation protease	head and packaging
UniRef90	UHGV-0115413_27	UniRef90_A0A6N8H118	358.0	0	CdiA_C domain-containing protein	N/A
eggNOG-mapper	UHGV-0115413_27	748224.HMPREF9436_01469	327.0	0	N/A	N/A
Pfam	UHGV-0115413_27	PF21814	N/A	N/A	N/A	DUF6883
COG	UHGV-0115413_27	COG5529	N/A	N/A	Phage-encoded DNA-binding protein ECs1768, contains HTH and DnaT DNA-binding domains	N/A
structural_annotation	UHGV-0115413_27	PF11429	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0115413_28	PF06442,MF_01194,NF000331,COG5475	N/A	N/A	N/A	N/A
PHROG	UHGV-0115413_29	phrog_3675	110.3	8.2e-33	N/A	unknown function
UniRef90	UHGV-0115413_29	UniRef90_A0A0E4H649	114.0	1.19e-30	YjcQ protein	N/A
eggNOG-mapper	UHGV-0115413_29	1120978.KB894082_gene1061	126.0	3.75e-36	YjcQ protein	N/A
Pfam	UHGV-0115413_29	PF09639	N/A	N/A	YjcQ protein	YjcQ
structural_annotation	UHGV-0115413_29	PF09639,TIGR04176,COG2345	N/A	N/A	N/A	N/A
PHROG	UHGV-0115413_30	phrog_194	60.9	2.9e-17	head scaffolding protein	head and packaging
UniRef90	UHGV-0115413_30	UniRef90_D4K444	144.0	2.32994e-41	Phage minor structural protein GP20	N/A
eggNOG-mapper	UHGV-0115413_30	748224.HMPREF9436_03336	155.0	0	Phage minor structural protein GP20	N/A
Pfam	UHGV-0115413_30	PF06810	N/A	N/A	Phage minor structural protein GP20	Phage_GP20
KOfam	UHGV-0115413_31	K12960	432.3	0	mtaD; 5-methylthioadenosine/S-adenosylhomocysteine deaminase [EC:3.5.4.31 3.5.4.28]	N/A
UniRef90	UHGV-0115413_31	UniRef90_A0A357WUW5	511.0	0	5-methylthioadenosine/S-adenosylhomocysteine deaminase	N/A
eggNOG-mapper	UHGV-0115413_31	1408437.JNJN01000004_gene2051	370.0	0	Amidohydrolase family	N/A
Pfam	UHGV-0115413_31	PF01979	N/A	N/A	Amidohydrolase family	Amidohydro_1
COG	UHGV-0115413_31	COG0402	N/A	N/A	Cytosine/adenosine deaminase or related metal-dependent hydrolase	N/A

All viral genomes

ID	Representative?	Length (bps)	% GC Content	CheckV Completeness	geNomad Score
UHGV-0115413	Yes	21,084	58	60	1