vOTU vOTU-105047

vOTU: vOTU-105047

Overview

Genome (FASTA) Annotation Track (GFF) Proteins (FASTA) Protein Annotation (TSV)

Cluster properties
vOTU ID	vOTU-105047
Number of genomes	1
Taxonomy (ICTV)	Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes
Taxonomy (UHGV)	vFAM-00007 → vSUBFAM-00026 → vGENUS-00148 → vOTU-105047
Host lineage	Bacteria → Firmicutes_A → Clostridia → Lachnospirales → Lachnospiraceae → Lachnospira
Host range breadth	Genus
Lifestyle	lytic (evidence: BACPHLIP)

Representative genome
Genome ID	UHGV-0319720
Biosample ID	SAMD00164908
Genome length (bp)	32,156 bps
CheckV completeness	56.32% (Medium-quality)
CDS count	50
CDS density	91.78%
tRNA count	0
Integrase	No
Viral confidence	Confident

Host assignment details
Assignment method	CRISPR
CRISPR-predicted host lineage	Bacteria → Firmicutes_A → Clostridia → Lachnospirales → Lachnospiraceae → Lachnospira	Total connections	3211	Host agreement	89.97
PHIST-predicted host lineage	Bacteria → Firmicutes_A → Clostridia	Total connections	24	Host agreement	75

Representative genome content

Select to view: Genome Viewer Functional Annotation

Genome view (completeness: 56.32)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
PHROG	UHGV-0319720_1	phrog_424	44.1	0.0000000000032	phosphoadenosine phosphosulfate reductase	moron, auxiliary metabolic gene and host takeover
UniRef90	UHGV-0319720_1	UniRef90_A0A412RQP5	214.0	0	PAPS_reduct domain-containing protein	N/A
eggNOG-mapper	UHGV-0319720_1	1151292.QEW_4547	120.0	4.97e-31	N/A	N/A
Pfam	UHGV-0319720_1	PF01507	N/A	N/A	Phosphoadenosine phosphosulfate reductase family	PAPS_reduct
COG	UHGV-0319720_1	COG0175	N/A	N/A	3'-phosphoadenosine 5'-phosphosulfate sulfotransferase (PAPS reductase)/FAD synthetase or related enzyme	N/A
structural_annotation	UHGV-0319720_1	PF01507,NF002537,COG0175	N/A	N/A	N/A	N/A
PHROG	UHGV-0319720_2	phrog_25456	74.4	1.3e-21	N/A	unknown function
KOfam	UHGV-0319720_3	K07455	149.9	2.94273e-44	recT; recombination protein RecT	N/A
PHROG	UHGV-0319720_3	phrog_148	163.5	0	RecT-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0319720_3	UniRef90_A0A317UEK3	276.0	0	Recombinase RecT	N/A
eggNOG-mapper	UHGV-0319720_3	1298920.KI911353_gene2727	246.0	0	RecT family	N/A
Pfam	UHGV-0319720_3	PF03837	N/A	N/A	RecT family	RecT
NCBIFam	UHGV-0319720_3	TIGR00616.1	N/A	N/A	recombinase, phage RecT family	N/A
COG	UHGV-0319720_3	COG3723	N/A	N/A	Recombinational DNA repair protein RecT	N/A
structural_annotation	UHGV-0319720_3	PF03837,NF007351,COG3723	N/A	N/A	N/A	N/A
PHROG	UHGV-0319720_4	phrog_374	209.3	0	HNH endonuclease	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0319720_4	UniRef90_A0A7W0C2S3	187.0	0	Putative transcriptional regulator	N/A
eggNOG-mapper	UHGV-0319720_4	1232453.BAIF02000057_gene1135	232.0	0	N/A	N/A
structural_annotation	UHGV-0319720_4	PF17375	N/A	N/A	N/A	N/A
KOfam	UHGV-0319720_5	K19171	100.7	1.4e-29	dndD; DNA sulfur modification protein DndD	N/A
PHROG	UHGV-0319720_5	phrog_77	188.6	0	SbcC-like subunit of palindrome specific endonuclease	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0319720_5	UniRef90_A0A8D9PGW5	900.0	0	Chromosome partition protein	N/A
eggNOG-mapper	UHGV-0319720_5	1298920.KI911353_gene2731	294.0	0	nuclear chromosome segregation	N/A
Pfam	UHGV-0319720_5	PF13476	N/A	N/A	AAA domain	AAA_23
COG	UHGV-0319720_5	COG1196	N/A	N/A	Chromosome segregation ATPase Smc	N/A
structural_annotation	UHGV-0319720_5	PF02463,MF_00449,NF041034,COG0419	N/A	N/A	N/A	N/A
PHROG	UHGV-0319720_7	phrog_26861	126.5	1.4e-37	N/A	unknown function
UniRef90	UHGV-0319720_7	UniRef90_A0A8D9PGK1	238.0	0	Single strand binding protein	N/A
eggNOG-mapper	UHGV-0319720_7	515620.EUBELI_01590	226.0	0	N/A	N/A
Pfam	UHGV-0319720_7	PF00436	N/A	N/A	Single-strand binding protein family	SSB
NCBIFam	UHGV-0319720_7	NF004476.0	N/A	N/A	single-stranded DNA-binding protein	N/A
COG	UHGV-0319720_7	COG0629	N/A	N/A	Single-stranded DNA-binding protein	N/A
structural_annotation	UHGV-0319720_7	PF00436,PF13567,MF_00984,NF004476,COG0629	N/A	N/A	N/A	N/A
COG	UHGV-0319720_10	COG3646	N/A	N/A	Phage regulatory protein Rha	N/A
structural_annotation	UHGV-0319720_10	PF10552	N/A	N/A	N/A	N/A
PHROG	UHGV-0319720_12	phrog_463	209.1	0	anti-repressor	transcription regulation
UniRef90	UHGV-0319720_12	UniRef90_A0A8D9PGL6	319.0	0	P22_AR protein	N/A
eggNOG-mapper	UHGV-0319720_12	596329.HMPREF0631_1352	202.0	0	BRO family, N-terminal domain protein	N/A
Pfam	UHGV-0319720_12	PF02498	N/A	N/A	BRO family, N-terminal domain	Bro-N
Pfam	UHGV-0319720_12	PF10552	N/A	N/A	ORF6C domain	ORF6C
COG	UHGV-0319720_12	COG3617	N/A	N/A	Prophage antirepressor	N/A
structural_annotation	UHGV-0319720_12	PF10552,PF02498,TIGR02681,COG3617	N/A	N/A	N/A	N/A
UniRef90	UHGV-0319720_13	UniRef90_UPI001D0090A6	137.0	7.94004e-41	N/A	N/A
eggNOG-mapper	UHGV-0319720_13	411470.RUMGNA_03231	98.6	2.54e-26	N/A	N/A
Pfam	UHGV-0319720_13	PF05339	N/A	N/A	N/A	DUF739
COG	UHGV-0319720_13	COG3655	N/A	N/A	DNA-binding transcriptional regulator, XRE family	N/A
structural_annotation	UHGV-0319720_13	PF05339,NF002773,COG1476	N/A	N/A	N/A	N/A
KOfam	UHGV-0319720_14	K22300	47.9	0.00000000000029	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	N/A
PHROG	UHGV-0319720_14	phrog_2967	49.5	0.000000000000077	transcriptional regulator	transcription regulation
UniRef90	UHGV-0319720_14	UniRef90_UPI001D029144	191.0	0	transcriptional regulator	N/A
eggNOG-mapper	UHGV-0319720_14	457412.RSAG_00795	118.0	2.72e-32	sequence-specific DNA binding	N/A
COG	UHGV-0319720_14	COG1396	N/A	N/A	Transcriptional regulator, contains XRE-family HTH domain	N/A
structural_annotation	UHGV-0319720_14	PF01381,NF007257,COG3655	N/A	N/A	N/A	N/A
KOfam	UHGV-0319720_15	K07273	138.1	8.5e-41	acm; lysozyme	N/A
PHROG	UHGV-0319720_15	phrog_6745	93.4	2.6e-27	endolysin	lysis
UniRef90	UHGV-0319720_15	UniRef90_A0A7U9R8E5	218.0	0	Autolytic lysozyme	N/A
eggNOG-mapper	UHGV-0319720_15	1235800.C819_00458	219.0	0	Glycosyl hydrolases family 25	N/A
Pfam	UHGV-0319720_15	PF01183	N/A	N/A	Glycosyl hydrolases family 25	Glyco_hydro_25
COG	UHGV-0319720_15	COG3757	N/A	N/A	Lyzozyme M1 (1,4-beta-N-acetylmuramidase), GH25 family	N/A
structural_annotation	UHGV-0319720_15	PF01183,NF003627,COG3757,COG5492	N/A	N/A	N/A	N/A
PHROG	UHGV-0319720_17	phrog_6616	147.2	9.94922e-44	tail protein	tail
UniRef90	UHGV-0319720_17	UniRef90_A0A8D9PGP3	964.0	0	Minor structural protein	N/A
eggNOG-mapper	UHGV-0319720_17	1294142.CINTURNW_1706	281.0	0	Phage minor structural protein	N/A
COG	UHGV-0319720_17	COG4926	N/A	N/A	Phage-related protein	N/A
structural_annotation	UHGV-0319720_17	PF14594,NF033848,COG3500	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0319720_18	PF07761	N/A	N/A	N/A	N/A
PHROG	UHGV-0319720_19	phrog_1194	60.7	2.1e-17	N/A	unknown function
eggNOG-mapper	UHGV-0319720_19	1232453.BAIF02000058_gene1638	63.5	0.0000000000301	N/A	N/A
structural_annotation	UHGV-0319720_19	PF20458,TIGR01633,COG3499	N/A	N/A	N/A	N/A
PHROG	UHGV-0319720_22	phrog_130	95.9	5e-28	anti-repressor Ant	transcription regulation
UniRef90	UHGV-0319720_22	UniRef90_A0A8D9PG17	389.0	0	Prophage antirepressor	N/A
eggNOG-mapper	UHGV-0319720_22	658655.HMPREF0988_00912	240.0	0	Phage antirepressor protein KilAC domain	N/A
Pfam	UHGV-0319720_22	PF02498	N/A	N/A	BRO family, N-terminal domain	Bro-N
Pfam	UHGV-0319720_22	PF03374	N/A	N/A	Phage antirepressor protein KilAC domain	ANT
COG	UHGV-0319720_22	COG3617	N/A	N/A	Prophage antirepressor	N/A
structural_annotation	UHGV-0319720_22	PF03374,PF02498,COG3645	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0319720_23	PF07875	N/A	N/A	N/A	N/A
UniRef90	UHGV-0319720_24	UniRef90_UPI001D0E5D20	63.2	0.00000000000688	CopG family transcriptional regulator	N/A
structural_annotation	UHGV-0319720_24	PF01402,NF041793,COG4453	N/A	N/A	N/A	N/A
UniRef90	UHGV-0319720_25	UniRef90_A0A8D9UIV6	223.0	0	RNAse domain protein	N/A
PHROG	UHGV-0319720_26	phrog_1535	70.4	2.8e-26	tail length tape measure protein	tail
eggNOG-mapper	UHGV-0319720_26	1232453.BAIF02000058_gene1637	97.4	4e-18	phage tail tape measure protein	N/A
COG	UHGV-0319720_26	COG5412	N/A	N/A	Phage-related protein	N/A
PHROG	UHGV-0319720_27	phrog_314	89.5	4.2e-26	homing endonuclease	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0319720_27	UniRef90_UPI000CF201CD	267.0	0	GIY-YIG nuclease family protein	N/A
eggNOG-mapper	UHGV-0319720_27	1126950.G9J202_9CAUD	86.3	4.6e-17	nucleic acid binding	N/A
Pfam	UHGV-0319720_27	PF01541	N/A	N/A	GIY-YIG catalytic domain	GIY-YIG
Pfam	UHGV-0319720_27	PF07453	N/A	N/A	NUMOD1 domain	NUMOD1
NCBIFam	UHGV-0319720_27	TIGR01453.1	N/A	N/A	group I intron endonuclease	N/A
structural_annotation	UHGV-0319720_27	PF19835,TIGR01453,COG2827	N/A	N/A	N/A	N/A
PHROG	UHGV-0319720_28	phrog_28918	75.8	3.6e-22	N/A	unknown function
UniRef90	UHGV-0319720_28	UniRef90_A0A8D9PGP0	702.0	0	Minor tail protein	N/A
eggNOG-mapper	UHGV-0319720_28	1298920.KI911353_gene2649	164.0	7.25004e-41	tape measure	N/A
COG	UHGV-0319720_28	COG3941	N/A	N/A	Phage tail tape-measure protein, controls tail length	N/A
structural_annotation	UHGV-0319720_28	PF20155	N/A	N/A	N/A	N/A
PHROG	UHGV-0319720_30	phrog_36112	68.8	6e-20	N/A	unknown function
UniRef90	UHGV-0319720_30	UniRef90_A0A8D9PG71	308.0	0	Tail assembly chaperone protein	N/A
eggNOG-mapper	UHGV-0319720_30	1298920.KI911353_gene2651	118.0	1.56e-31	N/A	N/A
structural_annotation	UHGV-0319720_30	PF10666	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0319720_32	1298920.KI911353_gene2652	66.6	0.0000000000135	N/A	N/A
structural_annotation	UHGV-0319720_32	PF16463,TIGR02241,COG5437	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0319720_33	PF05657	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0319720_34	1298920.KI911353_gene2654	181.0	0	N/A	N/A
AcrCatalog	UHGV-0319720_34	cluster_24841	87.0	1.55e-23	NA	N/A
eggNOG-mapper	UHGV-0319720_35	1298920.KI911353_gene2656	63.2	0.000000000138	N/A	N/A
structural_annotation	UHGV-0319720_35	PF07405,TIGR01563,COG5614	N/A	N/A	N/A	N/A
PHROG	UHGV-0319720_36	phrog_1129	74.9	7.2e-22	holin	lysis
UniRef90	UHGV-0319720_36	UniRef90_A0A8D9UII9	164.0	0	Holin	N/A
eggNOG-mapper	UHGV-0319720_36	411461.DORFOR_00721	107.0	1.39e-29	N/A	N/A
Pfam	UHGV-0319720_36	PF16079	N/A	N/A	Phage holin family Hol44, in holin superfamily V	Phage_holin_5_2
structural_annotation	UHGV-0319720_36	PF06946	N/A	N/A	N/A	N/A
PHROG	UHGV-0319720_37	phrog_1863	54.5	8.9e-16	N/A	unknown function
eggNOG-mapper	UHGV-0319720_37	1232452.BAIB02000007_gene1606	63.2	0.0000000000412	N/A	N/A
eggNOG-mapper	UHGV-0319720_38	397290.C810_01402	72.4	0.00000000000000882	N/A	N/A
UniRef90	UHGV-0319720_39	UniRef90_A0A416G2T8	52.4	0.000000336	Rho_N domain-containing protein	N/A
structural_annotation	UHGV-0319720_39	PF21169	N/A	N/A	N/A	N/A
PHROG	UHGV-0319720_40	phrog_29	163.1	0	major head protein	head and packaging
UniRef90	UHGV-0319720_40	UniRef90_UPI001D02C54B	669.0	0	major capsid protein	N/A
eggNOG-mapper	UHGV-0319720_40	1298920.KI911353_gene2660	346.0	0	Phage major capsid protein E	N/A
Pfam	UHGV-0319720_40	PF03864	N/A	N/A	Phage major capsid protein E	Phage_cap_E
structural_annotation	UHGV-0319720_40	PF03864,MF_04133,NF041162,COG4653	N/A	N/A	N/A	N/A
PHROG	UHGV-0319720_41	phrog_909	48.4	0.00000000000016	major head protein	head and packaging
eggNOG-mapper	UHGV-0319720_41	1298920.KI911353_gene2661	127.0	1.99e-36	N/A	N/A
UniRef90	UHGV-0319720_42	UniRef90_R6C0B6	122.0	7.72e-32	Phage capsid scaffolding protein	N/A
PHROG	UHGV-0319720_43	phrog_64	180.5	0	portal protein	head and packaging
UniRef90	UHGV-0319720_43	UniRef90_UPI001BC653D1	770.0	0	Phage portal protein	N/A
eggNOG-mapper	UHGV-0319720_43	1298920.KI911353_gene2663	462.0	0	Phage portal protein, SPP1 Gp6-like	N/A
Pfam	UHGV-0319720_43	PF05133	N/A	N/A	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
structural_annotation	UHGV-0319720_43	PF05133,MF_04120,TIGR01538,COG5511	N/A	N/A	N/A	N/A
UniRef90	UHGV-0319720_44	UniRef90_A0A8D9UIR9	157.0	0	RimK-related lysine biosynthesis protein	N/A
PHROG	UHGV-0319720_45	phrog_36	64.7	1.7e-18	transcriptional regulator	transcription regulation
UniRef90	UHGV-0319720_45	UniRef90_A0A352SH29	88.2	3.5e-20	RNA polymerase subunit sigma-70 (Fragment)	N/A
eggNOG-mapper	UHGV-0319720_45	97138.C820_00772	69.3	0.000000000000412	sigma factor activity	N/A
Pfam	UHGV-0319720_45	PF07374	N/A	N/A	N/A	DUF1492
COG	UHGV-0319720_45	COG1191	N/A	N/A	DNA-directed RNA polymerase specialized sigma subunit	N/A
structural_annotation	UHGV-0319720_45	PF07374,MF_00674,NF008895,COG1342	N/A	N/A	N/A	N/A
PHROG	UHGV-0319720_46	phrog_38	143.9	1.10002e-42	terminase large subunit	head and packaging
UniRef90	UHGV-0319720_46	UniRef90_A0A4Q5C857	971.0	0	Terminase_6C domain-containing protein	N/A
eggNOG-mapper	UHGV-0319720_46	397290.C810_01390	655.0	0	chromosome segregation	N/A
Pfam	UHGV-0319720_46	PF17289	N/A	N/A	Terminase RNaseH-like domain	Terminase_6C
COG	UHGV-0319720_46	COG5410	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0319720_46	PF17289,PF03237,MF_04147,NF033889,COG5362,COG5410	N/A	N/A	N/A	N/A
PHROG	UHGV-0319720_47	phrog_478	125.3	2.7e-37	site-specific recombination directionality factor RDF	integration and excision
UniRef90	UHGV-0319720_47	UniRef90_A0A373Q857	122.0	8.65e-33	YopX domain-containing protein	N/A
eggNOG-mapper	UHGV-0319720_47	1111121.HMPREF1247_0834	105.0	1.41e-27	N/A	N/A

All viral genomes

ID	Representative?	Length (bps)	% GC Content	CheckV Completeness	geNomad Score
UHGV-0319720	Yes	32,156	37	56	1