vOTU vOTU-105387

vOTU: vOTU-105387

Overview

Genome (FASTA) Annotation Track (GFF) Proteins (FASTA) Protein Annotation (TSV)

Cluster properties
vOTU ID	vOTU-105387
Number of genomes	1
Taxonomy (ICTV)	Bacteria → Firmicutes_A
Taxonomy (UHGV)	vFAM-00001 → vOTU-105387
Host lineage	Bacteria → Firmicutes_A
Host range breadth	Phylum
Lifestyle	lytic (Evidence: BACPHLIP)

Representative genome
Genome ID	UHGV-0000543
Biosample ID	SAMEA4765841
Genome length (bp)	28,332 bps
CheckV completeness	73.49% (Medium-quality)
CDS count	44
CDS density	93.41%
tRNA count	0
Integrase	No
Viral confidence	Confident

Host assignment details
Assignment method	PHIST
CRISPR-predicted host lineage		Total connections		Host agreement
PHIST-predicted host lineage	Bacteria → Firmicutes_A	Total connections	3	Host agreement	66.67

Representative genome content

Select to view: Genome Viewer Functional Annotation

Genome view (completeness: 73.49)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
KOfam	UHGV-0000543_1	K22300	58.9	1.2e-16	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	N/A
PHROG	UHGV-0000543_1	phrog_8	69.6	6e-20	transcriptional regulator	transcription regulation
UniRef90	UHGV-0000543_1	UniRef90_A0A2V2FME6	97.1	2.93e-23	Transcriptional regulator	N/A
eggNOG-mapper	UHGV-0000543_1	1410650.JHWL01000003_gene2857	95.1	1.67e-23	Cro/C1-type HTH DNA-binding domain	N/A
Pfam	UHGV-0000543_1	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
COG	UHGV-0000543_1	COG1396	N/A	N/A	Transcriptional regulator, contains XRE-family HTH domain	N/A
UniRef90	UHGV-0000543_2	UniRef90_R5L0Y8	62.4	0.0000000000178	HTH cro/C1-type domain-containing protein	N/A
PHROG	UHGV-0000543_5	phrog_6058	41.8	0.000000000014	N/A	unknown function
PHROG	UHGV-0000543_8	phrog_959	45.7	0.00000000000084	HNH endonuclease	DNA, RNA and nucleotide metabolism
Pfam	UHGV-0000543_8	PF13392	N/A	N/A	HNH endonuclease	HNH_3
PHROG	UHGV-0000543_10	phrog_3584	124.2	1.1e-36	replication initiation protein	DNA, RNA and nucleotide metabolism
eggNOG-mapper	UHGV-0000543_10	903814.ELI_3133	105.0	1.82e-24	N/A	N/A
structural_annotation	UHGV-0000543_10	PF21578,NF041486	N/A	N/A	N/A	N/A
PHROG	UHGV-0000543_11	phrog_2245	84.9	9.9e-25	nucleoside triphosphate pyrophosphohydrolase	other
UniRef90	UHGV-0000543_11	UniRef90_A0A844JSD9	80.1	1.28e-17	MazG domain-containing protein	N/A
eggNOG-mapper	UHGV-0000543_11	1499683.CCFF01000005_gene41	73.2	0.000000000000001	N/A	N/A
structural_annotation	UHGV-0000543_11	PF12643,MF_01020,TIGR03188	N/A	N/A	N/A	N/A
PHROG	UHGV-0000543_12	phrog_954	239.4	0	DNA methyltransferase	other
UniRef90	UHGV-0000543_12	UniRef90_A0A845QKN2	239.0	0	Class I SAM-dependent methyltransferase	N/A
eggNOG-mapper	UHGV-0000543_12	40521.Q9T170_BPA18	219.0	0	methyltransferase activity	N/A
PADLOC	UHGV-0000543_12	MTase_II_00074	239.3	0	Type II methyltransferase	RM
Pfam	UHGV-0000543_12	PF08241	N/A	N/A	Methyltransferase domain	Methyltransf_11
structural_annotation	UHGV-0000543_12	PF05148,MF_03044,NF033398,COG1041	N/A	N/A	N/A	N/A
KOfam	UHGV-0000543_13	K03111	80.5	3.6e-23	ssb; single-strand DNA-binding protein	N/A
PHROG	UHGV-0000543_13	phrog_44	98.0	1.3e-28	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0000543_13	UniRef90_A0A1T4M5T3	115.0	2.8e-30	Single-stranded DNA-binding protein	N/A
eggNOG-mapper	UHGV-0000543_13	1235835.C814_01372	98.2	2.33e-24	Single-stranded DNA-binding protein	N/A
Pfam	UHGV-0000543_13	PF00436	N/A	N/A	Single-strand binding protein family	SSB
NCBIFam	UHGV-0000543_13	TIGR00621.2	N/A	N/A	single-stranded DNA-binding protein	N/A
COG	UHGV-0000543_13	COG0629	N/A	N/A	Single-stranded DNA-binding protein	N/A
structural_annotation	UHGV-0000543_13	PF00436,MF_00984,NF005241,COG0629	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0000543_14	1160721.RBI_I01280	62.0	0.0000000000389	N/A	N/A
PHROG	UHGV-0000543_15	phrog_34937	53.8	0.0000000000000037	N/A	unknown function
KOfam	UHGV-0000543_16	K03497	144.9	8.00141e-43	parB, spo0J; ParB family transcriptional regulator, chromosome partitioning protein	N/A
PHROG	UHGV-0000543_16	phrog_6218	253.2	0	ParB-like partition protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0000543_16	UniRef90_A0A1M4ZAC8	243.0	0	Chromosome partitioning protein, ParB family	N/A
eggNOG-mapper	UHGV-0000543_16	394503.Ccel_3306	211.0	0	Belongs to the ParB family	N/A
Pfam	UHGV-0000543_16	PF02195	N/A	N/A	ParB/Sulfiredoxin domain	ParBc
NCBIFam	UHGV-0000543_16	TIGR00180.1	N/A	N/A	ParB/RepB/Spo0J family partition protein	N/A
COG	UHGV-0000543_16	COG0710	N/A	N/A	3-dehydroquinate dehydratase	N/A
structural_annotation	UHGV-0000543_16	PF02195,PF18579,MF_02015,TIGR00180,COG1475	N/A	N/A	N/A	N/A
PHROG	UHGV-0000543_21	phrog_36	56.2	7.9e-16	transcriptional regulator	transcription regulation
UniRef90	UHGV-0000543_21	UniRef90_A0A412EN86	89.0	6.01e-20	N/A	N/A
eggNOG-mapper	UHGV-0000543_21	702437.HMPREF9432_00895	73.2	0.000000000000016	sigma factor activity	N/A
Pfam	UHGV-0000543_21	PF04545	N/A	N/A	Sigma-70, region 4	Sigma70_r4
COG	UHGV-0000543_21	COG1191	N/A	N/A	DNA-directed RNA polymerase specialized sigma subunit	N/A
structural_annotation	UHGV-0000543_21	PF07374,MF_00674,NF008895,COG1191	N/A	N/A	N/A	N/A
PHROG	UHGV-0000543_22	phrog_309	65.4	8.9e-19	terminase small subunit	head and packaging
UniRef90	UHGV-0000543_22	UniRef90_A0A7T5EY64	58.5	0.0000000961	Helix-turn-helix domain-containing protein	N/A
eggNOG-mapper	UHGV-0000543_22	44251.PDUR_04680	64.7	0.000000000228	transposase activity	N/A
COG	UHGV-0000543_22	COG2963	N/A	N/A	Transposase InsE and inactivated derivatives	N/A
structural_annotation	UHGV-0000543_22	PF07141	N/A	N/A	N/A	N/A
PHROG	UHGV-0000543_23	phrog_5302	113.7	0	tail protein	tail
eggNOG-mapper	UHGV-0000543_23	411473.RUMCAL_00613	74.3	0.0000000000515	Collagen triple helix repeat (20 copies)	N/A
COG	UHGV-0000543_23	COG2931	N/A	N/A	Ca2+-binding protein, RTX toxin-related	N/A
KOfam	UHGV-0000543_25	K00986	149.6	2.94273e-44	ltrA; RNA-directed DNA polymerase [EC:2.7.7.49]	N/A
PHROG	UHGV-0000543_25	phrog_1423	246.8	0	Reverse transcriptase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0000543_25	UniRef90_A0A264W1H2	343.0	0	Reverse transcriptase domain-containing protein	N/A
eggNOG-mapper	UHGV-0000543_25	755164.D6PSR5_9CAUD	321.0	0	RNA-directed DNA polymerase activity	N/A
PADLOC	UHGV-0000543_25	icity0040	89.2	4e-26	RT (reverse transcriptase)	CRISPR-CAS
Pfam	UHGV-0000543_25	PF00078	N/A	N/A	Reverse transcriptase (RNA-dependent DNA polymerase)	RVT_1
structural_annotation	UHGV-0000543_25	PF00078,MF_01390,TIGR04416,COG3344	N/A	N/A	N/A	N/A
PHROG	UHGV-0000543_26	phrog_4912	50.3	0.000000000000044	tail fiber assembly	tail
Pfam	UHGV-0000543_26	PF16778	N/A	N/A	Phage tail assembly chaperone protein	Phage_tail_APC
structural_annotation	UHGV-0000543_26	PF16778	N/A	N/A	N/A	N/A
PHROG	UHGV-0000543_27	phrog_1863	83.1	1.6e-24	N/A	unknown function
eggNOG-mapper	UHGV-0000543_27	1203606.HMPREF1526_02027	92.8	4.91e-24	N/A	N/A
UniRef90	UHGV-0000543_28	UniRef90_A0A1M6B0R4	52.4	0.000000111	Bacteriophage holin	N/A
KOfam	UHGV-0000543_29	K21471	44.0	0.0000000000045	cwlO; peptidoglycan DL-endopeptidase CwlO [EC:3.4.-.-]	N/A
PHROG	UHGV-0000543_29	phrog_5115	41.5	0.00000000001	ferredoxin	moron, auxiliary metabolic gene and host takeover
UniRef90	UHGV-0000543_29	UniRef90_A0A1C6GMR6	218.0	0	NlpC/P60 family	N/A
eggNOG-mapper	UHGV-0000543_29	1007096.BAGW01000014_gene1097	135.0	4.61e-35	NLP P60 protein	N/A
Pfam	UHGV-0000543_29	PF00877	N/A	N/A	NlpC/P60 family	NLPC_P60
COG	UHGV-0000543_29	COG0791	N/A	N/A	Cell wall-associated hydrolase, NlpC_P60 family	N/A
structural_annotation	UHGV-0000543_29	PF00877,NF033742,COG0791	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0000543_30	411473.RUMCAL_02830	49.7	0.00000552	N-Acetylmuramoyl-L-alanine amidase	N/A
COG	UHGV-0000543_30	COG0860	N/A	N/A	N-acetylmuramoyl-L-alanine amidase	N/A
PHROG	UHGV-0000543_31	phrog_4581	104.9	8e-31	terminase small subunit	head and packaging
UniRef90	UHGV-0000543_31	UniRef90_A0A417W8X1	205.0	0	HNH endonuclease	N/A
eggNOG-mapper	UHGV-0000543_31	97138.C820_00619	160.0	0	HNH endonuclease	N/A
COG	UHGV-0000543_31	COG1403	N/A	N/A	5-methylcytosine-specific restriction endonuclease McrA	N/A
structural_annotation	UHGV-0000543_31	PF13671,MF_03171,NF005251,NF008448,COG4639	N/A	N/A	N/A	N/A
PHROG	UHGV-0000543_33	phrog_9	301.3	0	terminase large subunit	head and packaging
UniRef90	UHGV-0000543_33	UniRef90_A0A316T832	583.0	0	Terminase	N/A
eggNOG-mapper	UHGV-0000543_33	642492.Clole_1855	527.0	0	Phage terminase-like protein large subunit	N/A
Pfam	UHGV-0000543_33	PF03354	N/A	N/A	Terminase large subunit, ATPase domain	TerL_ATPase
Pfam	UHGV-0000543_33	PF20441	N/A	N/A	Terminase large subunit, endonuclease domain	TerL_nuclease
COG	UHGV-0000543_33	COG4626	N/A	N/A	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	N/A
structural_annotation	UHGV-0000543_33	PF20441,PF03354,MF_04145,TIGR01547,COG4626	N/A	N/A	N/A	N/A
KOfam	UHGV-0000543_34	K06904	131.0	1.1e-38	N/A	N/A
PHROG	UHGV-0000543_34	phrog_12	161.5	0	portal protein	head and packaging
UniRef90	UHGV-0000543_34	UniRef90_A0A6B9SS26	487.0	0	Portal protein	N/A
eggNOG-mapper	UHGV-0000543_34	1211817.CCAT010000007_gene1039	304.0	0	Portal protein	N/A
Pfam	UHGV-0000543_34	PF04860	N/A	N/A	Phage portal protein	Phage_portal
Pfam	UHGV-0000543_34	PF04586	N/A	N/A	Caudovirus prohead serine protease	Peptidase_S78
NCBIFam	UHGV-0000543_34	TIGR01543.1	N/A	N/A	HK97 family phage prohead protease	N/A
COG	UHGV-0000543_34	COG4695	N/A	N/A	Phage portal protein BeeE	N/A
PHROG	UHGV-0000543_35	phrog_10	64.3	1.2e-18	major head protein	head and packaging
UniRef90	UHGV-0000543_35	UniRef90_A0A843GD64	239.0	0	Phage major capsid protein	N/A
eggNOG-mapper	UHGV-0000543_35	742740.HMPREF9474_04304	250.0	0	Phage capsid family	N/A
Pfam	UHGV-0000543_35	PF05065	N/A	N/A	Phage capsid family	Phage_capsid
NCBIFam	UHGV-0000543_35	TIGR01554.2	N/A	N/A	phage major capsid protein	N/A
structural_annotation	UHGV-0000543_35	PF05065,PF09032,MF_04119,TIGR01554,COG4653	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0000543_36	641107.CDLVIII_1340	77.0	2.02e-17	N/A	N/A
structural_annotation	UHGV-0000543_36	PF05135,TIGR01560	N/A	N/A	N/A	N/A
UniRef90	UHGV-0000543_37	UniRef90_UPI00156F5992	119.0	9.22e-33	head-tail adaptor protein	N/A
eggNOG-mapper	UHGV-0000543_37	1536774.H70357_10645	70.9	0.0000000000000265	N/A	N/A
Pfam	UHGV-0000543_37	PF05521	N/A	N/A	Phage head-tail joining protein	Phage_H_T_join
structural_annotation	UHGV-0000543_37	PF05521,TIGR01563,COG5614	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0000543_38	TIGR01725	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0000543_39	PF05657	N/A	N/A	N/A	N/A
PHROG	UHGV-0000543_40	phrog_88	76.7	2.9e-22	major tail protein	tail
UniRef90	UHGV-0000543_40	UniRef90_A0A6B9SV22	195.0	0	Major tail protein	N/A
eggNOG-mapper	UHGV-0000543_40	171693.BN988_01598	53.9	0.00000317	N/A	N/A
NCBIFam	UHGV-0000543_40	TIGR01603.1	N/A	N/A	major tail protein	N/A
structural_annotation	UHGV-0000543_40	PF04630,TIGR01603,COG3498	N/A	N/A	N/A	N/A
PHROG	UHGV-0000543_42	phrog_5493	100.1	7.7e-30	tail length tape measure protein	tail
eggNOG-mapper	UHGV-0000543_42	333138.LQ50_04250	116.0	4.86e-24	Phage tail tape measure protein	N/A
COG	UHGV-0000543_42	COG1196	N/A	N/A	Chromosome segregation ATPase Smc	N/A
PHROG	UHGV-0000543_44	phrog_538	182.4	0	minor tail protein	tail
UniRef90	UHGV-0000543_44	UniRef90_A0A6B9SRB3	207.0	0	Endopeptidase tail protein	N/A
eggNOG-mapper	UHGV-0000543_44	768704.Desmer_4453	137.0	6.16e-34	Siphovirus ReqiPepy6 Gp37-like protein	N/A
Pfam	UHGV-0000543_44	PF14594	N/A	N/A	Siphovirus ReqiPepy6 Gp37-like protein	Sipho_Gp37
structural_annotation	UHGV-0000543_44	PF14594,TIGR01665,COG4926	N/A	N/A	N/A	N/A

All viral genomes

ID	Representative?	Length (bps)	% GC Content	CheckV Completeness	geNomad Score
UHGV-0000543	Yes	28,332	42	73	1