vOTU vOTU-105728

vOTU: vOTU-105728

Overview

Genome (FASTA) Annotation Track (GFF) Proteins (FASTA) Protein Annotation (TSV)

Cluster properties
vOTU ID	vOTU-105728
Number of genomes	1
Taxonomy (ICTV)
Taxonomy (UHGV)	vFAM-00004 → vSUBFAM-00079 → vGENUS-05182 → vOTU-105728
Host lineage	Bacteria → Firmicutes_A → Clostridia → Oscillospirales → Ruminococcaceae → Gemmiger
Host range breadth	Genus
Lifestyle	lytic (Evidence: BACPHLIP)

Representative genome
Genome ID	UHGV-1431676
Biosample ID	SAMN06112001
Genome length (bp)	31,128 bps
CheckV completeness	76.33% (Medium-quality)
CDS count	52
CDS density	92.74%
tRNA count	0
Integrase	No
Viral confidence	Confident

Host assignment details
Assignment method	CRISPR
CRISPR-predicted host lineage	Bacteria → Firmicutes_A → Clostridia → Oscillospirales → Ruminococcaceae → Gemmiger	Total connections	187	Host agreement	91.44
PHIST-predicted host lineage		Total connections		Host agreement

Representative genome content

Select to view: Genome Viewer Functional Annotation

Genome view (completeness: 76.33)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
eggNOG-mapper	UHGV-1431676_2	1226322.HMPREF1545_00079	68.2	0.000000000000322	N/A	N/A
structural_annotation	UHGV-1431676_3	PF12510	N/A	N/A	N/A	N/A
PHROG	UHGV-1431676_4	phrog_20016	198.5	0	N/A	unknown function
UniRef90	UHGV-1431676_4	UniRef90_A0A285PT46	196.0	0	Tumour necrosis factor-like domain	N/A
eggNOG-mapper	UHGV-1431676_4	1226322.HMPREF1545_00077	176.0	0	N/A	N/A
structural_annotation	UHGV-1431676_4	PF18573,NF033147	N/A	N/A	N/A	N/A
PHROG	UHGV-1431676_5	phrog_16490	110.2	2.3e-32	N/A	unknown function
eggNOG-mapper	UHGV-1431676_5	1408437.JNJN01000043_gene803	80.1	6.29e-16	N/A	N/A
PHROG	UHGV-1431676_7	phrog_22984	77.8	6.1e-24	N/A	unknown function
PHROG	UHGV-1431676_8	phrog_21718	111.1	8.1e-33	N/A	unknown function
eggNOG-mapper	UHGV-1431676_8	397290.C810_05210	88.6	5.74e-20	N/A	N/A
PHROG	UHGV-1431676_9	phrog_3754	92.2	5.9e-27	N/A	unknown function
eggNOG-mapper	UHGV-1431676_9	476272.RUMHYD_01764	144.0	8.32371e-43	N/A	N/A
eggNOG-mapper	UHGV-1431676_11	78345.BMERY_0692	81.3	2.15e-18	N/A	N/A
structural_annotation	UHGV-1431676_11	PF07825,NF040990,COG3311	N/A	N/A	N/A	N/A
PHROG	UHGV-1431676_12	phrog_1129	79.7	2e-23	holin	lysis
UniRef90	UHGV-1431676_12	UniRef90_UPI00051B7422	95.5	1.16e-23	phage holin family protein	N/A
eggNOG-mapper	UHGV-1431676_12	411460.RUMTOR_01325	91.7	6.41e-23	Phage holin family Hol44, in holin superfamily V	N/A
Pfam	UHGV-1431676_12	PF16079	N/A	N/A	Phage holin family Hol44, in holin superfamily V	Phage_holin_5_2
structural_annotation	UHGV-1431676_12	PF16079	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-1431676_13	33035.JPJF01000090_gene94	68.2	0.000000000000133	N/A	N/A
KOfam	UHGV-1431676_14	K07273	136.6	2.69999e-40	acm; lysozyme	N/A
PHROG	UHGV-1431676_14	phrog_291	102.9	4.6e-30	endolysin	lysis
UniRef90	UHGV-1431676_14	UniRef90_A0A1Q6T343	425.0	0	Peptidase_M23 domain-containing protein	N/A
eggNOG-mapper	UHGV-1431676_14	1408322.JHYK01000015_gene1912	130.0	6.32e-31	Glycosyl hydrolase, family 25	N/A
Pfam	UHGV-1431676_14	PF01551	N/A	N/A	Peptidase family M23	Peptidase_M23
Pfam	UHGV-1431676_14	PF01183	N/A	N/A	Glycosyl hydrolases family 25	Glyco_hydro_25
COG	UHGV-1431676_14	COG3757	N/A	N/A	Lyzozyme M1 (1,4-beta-N-acetylmuramidase), GH25 family	N/A
structural_annotation	UHGV-1431676_14	PF01551,PF01183,NF040883,COG0739,COG3757	N/A	N/A	N/A	N/A
UniRef90	UHGV-1431676_17	UniRef90_A0A1C5MZC0	398.0	0	N/A	N/A
eggNOG-mapper	UHGV-1431676_17	1235802.C823_01049	264.0	0	N/A	N/A
structural_annotation	UHGV-1431676_17	PF19789	N/A	N/A	N/A	N/A
UniRef90	UHGV-1431676_18	UniRef90_UPI000C79F998	79.0	0.00000000000205	H-type lectin domain-containing protein	N/A
structural_annotation	UHGV-1431676_18	PF10651,NF041074	N/A	N/A	N/A	N/A
PHROG	UHGV-1431676_19	phrog_1067	381.5	0	minor head protein	head and packaging
UniRef90	UHGV-1431676_19	UniRef90_A0A413DNC1	494.0	0	Prophage_tail domain-containing protein	N/A
eggNOG-mapper	UHGV-1431676_19	1160721.RBI_I01574	378.0	0	Prophage endopeptidase tail	N/A
Pfam	UHGV-1431676_19	PF06605	N/A	N/A	Prophage endopeptidase tail	Prophage_tail
NCBIFam	UHGV-1431676_19	TIGR01665.1	N/A	N/A	phage tail spike protein	N/A
COG	UHGV-1431676_19	COG4926	N/A	N/A	Phage-related protein	N/A
structural_annotation	UHGV-1431676_19	PF14594,TIGR01665,COG4926	N/A	N/A	N/A	N/A
PHROG	UHGV-1431676_20	phrog_33	67.5	3.3e-19	distal tail protein Dit	tail
UniRef90	UHGV-1431676_20	UniRef90_A0A2X2UUQ3	128.0	1.52e-32	Phage putative tail component	N/A
eggNOG-mapper	UHGV-1431676_20	1582149.A0A0A8WHP7_9CAUD	107.0	1.41e-25	Phage tail protein	N/A
structural_annotation	UHGV-1431676_20	PF20195,TIGR01633,COG4722	N/A	N/A	N/A	N/A
PHROG	UHGV-1431676_21	phrog_6900	222.0	0	tail length tape measure protein	tail
UniRef90	UHGV-1431676_21	UniRef90_A0A0D0SGC8	309.0	0	Phage minor tail protein	N/A
eggNOG-mapper	UHGV-1431676_21	1437608.BBIA_2554	273.0	0	phage tail tape measure protein	N/A
COG	UHGV-1431676_21	COG5412	N/A	N/A	Phage-related protein	N/A
structural_annotation	UHGV-1431676_21	PF20155,MF_04138,COG5281	N/A	N/A	N/A	N/A
PHROG	UHGV-1431676_22	phrog_20920	128.2	2.7e-38	N/A	unknown function
UniRef90	UHGV-1431676_22	UniRef90_S6B1J4	103.0	3.28e-26	Small-conductance mechanosensitive channel	N/A
eggNOG-mapper	UHGV-1431676_22	1536770.R50345_22870	123.0	7.03e-35	N/A	N/A
structural_annotation	UHGV-1431676_22	PF16674	N/A	N/A	N/A	N/A
PHROG	UHGV-1431676_24	phrog_18646	49.1	0.000000000000098	N/A	unknown function
PHROG	UHGV-1431676_25	phrog_885	97.4	1.2e-28	major tail protein	tail
UniRef90	UHGV-1431676_25	UniRef90_A0A843J9F0	167.0	0	Ig-like domain-containing protein	N/A
eggNOG-mapper	UHGV-1431676_25	1111121.HMPREF1247_0789	177.0	0	N/A	N/A
structural_annotation	UHGV-1431676_25	PF06488,TIGR01603,COG5437	N/A	N/A	N/A	N/A
PHROG	UHGV-1431676_26	phrog_17405	41.5	0.000000000019	head protein	head and packaging
UniRef90	UHGV-1431676_26	UniRef90_A0A415JI88	113.0	4.37e-30	N/A	N/A
structural_annotation	UHGV-1431676_26	PF11367	N/A	N/A	N/A	N/A
PHROG	UHGV-1431676_27	phrog_17977	81.8	5.6e-24	N/A	unknown function
UniRef90	UHGV-1431676_27	UniRef90_UPI00141211AB	91.7	1.5e-21	head-tail adaptor protein	N/A
structural_annotation	UHGV-1431676_27	PF07405,TIGR01563,COG5614	N/A	N/A	N/A	N/A
PHROG	UHGV-1431676_29	phrog_544	294.2	0	major head protein	head and packaging
UniRef90	UHGV-1431676_29	UniRef90_UPI0019576143	396.0	0	N4-gp56 family major capsid protein	N/A
eggNOG-mapper	UHGV-1431676_29	411471.SUBVAR_06940	382.0	0	N/A	N/A
NCBIFam	UHGV-1431676_29	TIGR04387.1	N/A	N/A	N4-gp56 family major capsid protein	N/A
structural_annotation	UHGV-1431676_29	PF05065,MF_04119,TIGR04387,COG4653	N/A	N/A	N/A	N/A
PHROG	UHGV-1431676_30	phrog_194	49.3	0.000000000000086	head scaffolding protein	head and packaging
UniRef90	UHGV-1431676_30	UniRef90_A0A6B9SU02	104.0	2.94e-24	Fibronectin autolysin	N/A
structural_annotation	UHGV-1431676_30	PF06810,MF_02110	N/A	N/A	N/A	N/A
PHROG	UHGV-1431676_31	phrog_5	76.0	7.1e-22	tail completion or Neck1 protein	connector
UniRef90	UHGV-1431676_31	UniRef90_A0A7X5E1T2	178.0	0	HK97 gp10 family phage protein	N/A
eggNOG-mapper	UHGV-1431676_31	1280685.AUKC01000004_gene1630	106.0	8.47e-28	N/A	N/A
Pfam	UHGV-1431676_31	PF04883	N/A	N/A	Bacteriophage HK97-gp10, putative tail-component	HK97-gp10_like
NCBIFam	UHGV-1431676_31	TIGR01725.1	N/A	N/A	HK97-gp10 family putative phage morphogenesis protein	N/A
structural_annotation	UHGV-1431676_31	PF20039,TIGR01725,COG5005	N/A	N/A	N/A	N/A
PHROG	UHGV-1431676_32	phrog_595	112.2	5.8e-33	head maturation protease	head and packaging
UniRef90	UHGV-1431676_32	UniRef90_A0A7X5E1T7	419.0	0	Phage_Mu_F domain-containing protein	N/A
eggNOG-mapper	UHGV-1431676_32	1504822.CCNO01000013_gene286	187.0	0	cell adhesion	N/A
Pfam	UHGV-1431676_32	PF04233	N/A	N/A	Phage Mu protein F like protein	Phage_Mu_F
COG	UHGV-1431676_32	COG2369	N/A	N/A	N/A	N/A
structural_annotation	UHGV-1431676_32	PF04233,TIGR01641,COG2369	N/A	N/A	N/A	N/A
PHROG	UHGV-1431676_33	phrog_64	174.9	0	portal protein	head and packaging
UniRef90	UHGV-1431676_33	UniRef90_UPI0018A8A301	598.0	0	phage portal protein	N/A
eggNOG-mapper	UHGV-1431676_33	673376.F2VHW1_9CAUD	201.0	0	Phage portal protein, SPP1 Gp6-like	N/A
Pfam	UHGV-1431676_33	PF05133	N/A	N/A	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
structural_annotation	UHGV-1431676_33	PF05133,MF_04120,TIGR01538,COG3567	N/A	N/A	N/A	N/A
KOfam	UHGV-1431676_34	K06909	396.4	0	xtmB; phage terminase large subunit	N/A
PHROG	UHGV-1431676_34	phrog_3717	154.6	0	terminase large subunit	head and packaging
UniRef90	UHGV-1431676_34	UniRef90_UPI001C3B9235	634.0	0	PBSX family phage terminase large subunit	N/A
eggNOG-mapper	UHGV-1431676_34	411471.SUBVAR_06507	573.0	0	Phage terminase, large subunit, PBSX family	N/A
Pfam	UHGV-1431676_34	PF04466	N/A	N/A	Phage terminase large subunit	Terminase_3
Pfam	UHGV-1431676_34	PF17288	N/A	N/A	Terminase RNAseH like domain	Terminase_3C
NCBIFam	UHGV-1431676_34	TIGR01547.1	N/A	N/A	PBSX family phage terminase large subunit	N/A
COG	UHGV-1431676_34	COG1783	N/A	N/A	Phage terminase large subunit	N/A
structural_annotation	UHGV-1431676_34	PF04466,PF17288,MF_04145,TIGR01547,COG1783	N/A	N/A	N/A	N/A
PHROG	UHGV-1431676_35	phrog_606	80.7	1.8e-23	terminase small subunit	head and packaging
UniRef90	UHGV-1431676_35	UniRef90_UPI00195648BB	163.0	0	DNA-packaging protein	N/A
eggNOG-mapper	UHGV-1431676_35	397290.C810_05185	141.0	4.55002e-41	DNA-packaging protein gp3	N/A
Pfam	UHGV-1431676_35	PF16677	N/A	N/A	DNA-packaging protein gp3	GP3_package
structural_annotation	UHGV-1431676_35	PF16677	N/A	N/A	N/A	N/A
PHROG	UHGV-1431676_36	phrog_36	73.9	2.5e-21	transcriptional regulator	transcription regulation
UniRef90	UHGV-1431676_36	UniRef90_A0A8J6J9G8	52.8	0.00000649	Sigma-70 family RNA polymerase sigma factor	N/A
eggNOG-mapper	UHGV-1431676_36	658655.HMPREF0988_02569	50.8	0.00000595	sigma factor activity	N/A
Pfam	UHGV-1431676_36	PF07374	N/A	N/A	N/A	DUF1492
COG	UHGV-1431676_36	COG1191	N/A	N/A	DNA-directed RNA polymerase specialized sigma subunit	N/A
structural_annotation	UHGV-1431676_36	PF04545,PF18323,MF_00674,NF009172,COG1191	N/A	N/A	N/A	N/A
PHROG	UHGV-1431676_37	phrog_924	44.3	0.0000000000035	N/A	unknown function
UniRef90	UHGV-1431676_37	UniRef90_A0A4R4IL87	51.2	0.00000101	N/A	N/A
Pfam	UHGV-1431676_37	PF04448	N/A	N/A	N/A	DUF551
structural_annotation	UHGV-1431676_37	NF041588	N/A	N/A	N/A	N/A
PHROG	UHGV-1431676_39	phrog_9958	124.4	6.3e-37	N/A	unknown function
UniRef90	UHGV-1431676_39	UniRef90_UPI001D08A241	147.0	1.60995e-41	N/A	N/A
eggNOG-mapper	UHGV-1431676_39	1160721.RBI_I01591	133.0	9.67e-37	N/A	N/A
structural_annotation	UHGV-1431676_39	PF19789	N/A	N/A	N/A	N/A
UniRef90	UHGV-1431676_43	UniRef90_UPI00156FA052	108.0	2.36e-28	N/A	N/A
eggNOG-mapper	UHGV-1431676_43	1395587.P364_0110505	72.4	0.00000000000000777	N/A	N/A
structural_annotation	UHGV-1431676_43	PF16475	N/A	N/A	N/A	N/A
KOfam	UHGV-1431676_46	K01160	50.9	0.000000000000044	rusA; crossover junction endodeoxyribonuclease RusA [EC:3.1.21.10]	N/A
PHROG	UHGV-1431676_46	phrog_34	54.1	0.0000000000000033	RusA-like Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1431676_46	UniRef90_A0A3G2R5K0	126.0	5.81e-35	RusA family crossover junction endodeoxyribonuclease	N/A
eggNOG-mapper	UHGV-1431676_46	875454.BAEW01000002_gene491	117.0	2.44e-32	Endodeoxyribonuclease RusA	N/A
Pfam	UHGV-1431676_46	PF05866	N/A	N/A	Endodeoxyribonuclease RusA	RusA
COG	UHGV-1431676_46	COG4570	N/A	N/A	Holliday junction resolvase RusA (prophage-encoded endonuclease)	N/A
structural_annotation	UHGV-1431676_46	PF05866,NF007305,COG4570	N/A	N/A	N/A	N/A
PHROG	UHGV-1431676_47	phrog_757	128.3	4.3e-38	DNA methyltransferase	other
UniRef90	UHGV-1431676_47	UniRef90_A0A374BFJ7	267.0	0	DNA cytosine methyltransferase	N/A
eggNOG-mapper	UHGV-1431676_47	748224.HMPREF9436_03069	186.0	0	DNA (cytosine-5-)-methyltransferase activity	N/A
COG	UHGV-1431676_47	COG0270	N/A	N/A	DNA-cytosine methylase	N/A
PHROG	UHGV-1431676_48	phrog_757	51.2	0.000000000000018	DNA methyltransferase	other
UniRef90	UHGV-1431676_48	UniRef90_A0A7J2R6L5	66.6	0.000000000000128	DNA cytosine methyltransferase (Fragment)	N/A
eggNOG-mapper	UHGV-1431676_48	748224.HMPREF9436_03069	100.0	7.78e-26	DNA (cytosine-5-)-methyltransferase activity	N/A
COG	UHGV-1431676_48	COG0270	N/A	N/A	DNA-cytosine methylase	N/A
KOfam	UHGV-1431676_51	K02314	231.5	0	dnaB; replicative DNA helicase [EC:5.6.2.3]	N/A
PHROG	UHGV-1431676_51	phrog_19	231.7	0	DnaB-like replicative helicase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1431676_51	UniRef90_UPI000C7E331E	265.0	0	replicative DNA helicase	N/A
eggNOG-mapper	UHGV-1431676_51	1121013.P873_12640	135.0	1.75e-32	it exhibits DNA-dependent ATPase activity and contains distinct active sites for ATP binding, DNA binding, and interaction with DnaC protein, primase, and other prepriming proteins	N/A
Pfam	UHGV-1431676_51	PF00772	N/A	N/A	DnaB-like helicase N terminal domain	DnaB
Pfam	UHGV-1431676_51	PF03796	N/A	N/A	DnaB-like helicase C terminal domain	DnaB_C
COG	UHGV-1431676_51	COG0305	N/A	N/A	Replicative DNA helicase	N/A
structural_annotation	UHGV-1431676_51	PF03796,PF00772,MF_04155,TIGR00665,COG0305	N/A	N/A	N/A	N/A
PHROG	UHGV-1431676_52	phrog_9474	86.8	3e-25	replication initiation protein	DNA, RNA and nucleotide metabolism
eggNOG-mapper	UHGV-1431676_52	720554.Clocl_0687	86.7	3.01e-18	HNH endonuclease	N/A
COG	UHGV-1431676_52	COG1403	N/A	N/A	5-methylcytosine-specific restriction endonuclease McrA	N/A

All viral genomes

ID	Representative?	Length (bps)	% GC Content	CheckV Completeness	geNomad Score
UHGV-1431676	Yes	31,128	51	76	1