vOTU vOTU-106111

vOTU: vOTU-106111

Overview

Genome (FASTA) Annotation Track (GFF) Proteins (FASTA) Protein Annotation (TSV)

Cluster properties
vOTU ID	vOTU-106111
Number of genomes	1
Taxonomy (ICTV)
Taxonomy (UHGV)	vFAM-00004 → vSUBFAM-05643 → vGENUS-12692 → vOTU-106111
Host lineage	Bacteria → Firmicutes_A → Clostridia → Oscillospirales → Oscillospiraceae → CAG-83 → CAG-83 sp003539495
Host range breadth	Species
Lifestyle	temperate (Evidence: integrase)

Representative genome
Genome ID	UHGV-0331258
Biosample ID	SAMN07688528
Genome length (bp)	30,715 bps
CheckV completeness	68.66% (Medium-quality)
CDS count	42
CDS density	89.89%
tRNA count	2
Integrase	Yes
Viral confidence	Confident

Host assignment details
Assignment method	CRISPR
CRISPR-predicted host lineage	Bacteria → Firmicutes_A → Clostridia → Oscillospirales → Oscillospiraceae → CAG-83 → CAG-83 sp003539495	Total connections	1	Host agreement	100
PHIST-predicted host lineage		Total connections		Host agreement

Representative genome content

Select to view: Genome Viewer Functional Annotation

Genome view (completeness: 68.66)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
PHROG	UHGV-0331258_2	phrog_36	56.3	6.9e-16	transcriptional regulator	transcription regulation
UniRef90	UHGV-0331258_2	UniRef90_A0A3B8SPQ2	60.1	0.00000000446	RNA polymerase subunit sigma-70	N/A
eggNOG-mapper	UHGV-0331258_2	755731.Clo1100_1155	52.4	0.000000658	N/A	N/A
PHROG	UHGV-0331258_7	phrog_801	83.9	2.4e-24	endolysin; inhibits RNA polymerase	lysis
UniRef90	UHGV-0331258_7	UniRef90_A0A413FWV3	103.0	1.31e-25	N/A	N/A
eggNOG-mapper	UHGV-0331258_7	864069.MicloDRAFT_00064970	68.2	0.000000000000995	N/A	N/A
Pfam	UHGV-0331258_7	PF18909	N/A	N/A	dATP/dGTP diphosphohydrolase, N-terminal	dGTP_diPhyd_N
PHROG	UHGV-0331258_8	phrog_3	40.1	0.00000000011	transcriptional repressor	transcription regulation
Pfam	UHGV-0331258_8	PF13443	N/A	N/A	Cro/C1-type HTH DNA-binding domain	HTH_26
COG	UHGV-0331258_8	COG3655	N/A	N/A	DNA-binding transcriptional regulator, XRE family	N/A
PHROG	UHGV-0331258_11	phrog_29887	50.2	0.000000000000063	N/A	unknown function
PHROG	UHGV-0331258_12	phrog_14105	195.8	0	N/A	unknown function
UniRef90	UHGV-0331258_12	UniRef90_U2BMS0	249.0	0	Pentapeptide repeat protein	N/A
eggNOG-mapper	UHGV-0331258_12	742740.HMPREF9474_02379	174.0	0	dextransucrase activity	N/A
COG	UHGV-0331258_12	COG5263	N/A	N/A	Glucan-binding domain (YG repeat)	N/A
eggNOG-mapper	UHGV-0331258_13	1304866.K413DRAFT_4695	85.5	3.51e-21	N/A	N/A
structural_annotation	UHGV-0331258_13	NF010673	N/A	N/A	N/A	N/A
PHROG	UHGV-0331258_14	phrog_1682	64.3	2.2e-18	RusA-like Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0331258_14	UniRef90_A0A417H6W1	147.0	9.80909e-44	RusA family crossover junction endodeoxyribonuclease	N/A
eggNOG-mapper	UHGV-0331258_14	1235790.C805_00029	110.0	3.01e-30	Endonuclease that resolves Holliday junction intermediates made during homologous genetic recombination and DNA repair. Exhibits sequence and structure-selective cleavage of four-way DNA junctions, where it introduces symmetrical nicks in two strands of the same polarity at the 5' side of dinucleotides. Corrects the defects in genetic recombination and DNA repair associated with inactivation of ruvAB or ruvC	N/A
COG	UHGV-0331258_14	COG4570	N/A	N/A	Holliday junction resolvase RusA (prophage-encoded endonuclease)	N/A
structural_annotation	UHGV-0331258_14	PF05866,NF007305,COG4570	N/A	N/A	N/A	N/A
PHROG	UHGV-0331258_15	phrog_9804	152.3	1.4013e-45	N/A	unknown function
UniRef90	UHGV-0331258_15	UniRef90_UPI0013E032B9	213.0	0	replicative helicase loader/inhibitor	N/A
eggNOG-mapper	UHGV-0331258_15	903814.ELI_3550	142.0	8.43e-40	Loader and inhibitor of phage G40P	N/A
Pfam	UHGV-0331258_15	PF11417	N/A	N/A	Loader and inhibitor of phage G40P	Inhibitor_G39P
structural_annotation	UHGV-0331258_15	PF11417	N/A	N/A	N/A	N/A
PHROG	UHGV-0331258_16	phrog_16304	162.3	0	N/A	unknown function
UniRef90	UHGV-0331258_16	UniRef90_UPI0011C97B10	157.0	2.94273e-44	N/A	N/A
eggNOG-mapper	UHGV-0331258_16	321846.PS417_10005	94.0	2.43e-20	N/A	N/A
Pfam	UHGV-0331258_16	PF19808	N/A	N/A	N/A	DUF6291
structural_annotation	UHGV-0331258_16	PF19808	N/A	N/A	N/A	N/A
KOfam	UHGV-0331258_17	K03111	131.5	9.8e-39	ssb; single-strand DNA-binding protein	N/A
PHROG	UHGV-0331258_17	phrog_44	136.1	2.1e-40	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0331258_17	UniRef90_A0A6N9P8A3	172.0	0	Single-stranded DNA-binding protein	N/A
eggNOG-mapper	UHGV-0331258_17	1203606.HMPREF1526_02270	162.0	0	Single-stranded DNA-binding protein	N/A
Pfam	UHGV-0331258_17	PF00436	N/A	N/A	Single-strand binding protein family	SSB
NCBIFam	UHGV-0331258_17	TIGR00621.2	N/A	N/A	single-stranded DNA-binding protein	N/A
COG	UHGV-0331258_17	COG0629	N/A	N/A	Single-stranded DNA-binding protein	N/A
HAMAP	UHGV-0331258_17	MF_00984	N/A	N/A	Single-stranded DNA-binding protein	N/A
structural_annotation	UHGV-0331258_17	PF00436,MF_00984,NF005241,COG0629	N/A	N/A	N/A	N/A
UniRef90	UHGV-0331258_18	UniRef90_R5XZW2	93.2	8.71e-23	HNH domain-containing protein	N/A
eggNOG-mapper	UHGV-0331258_18	1232449.BAHV02000016_gene1841	80.9	1.21e-18	HNH nucleases	N/A
Pfam	UHGV-0331258_18	PF01844	N/A	N/A	HNH endonuclease	HNH
PHROG	UHGV-0331258_19	phrog_72	50.7	0.000000000000021	NinB/ Orf homologous recombination mediator	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0331258_19	UniRef90_A0A8D9PDS2	120.0	3.51e-31	NinB protein	N/A
eggNOG-mapper	UHGV-0331258_19	445972.ANACOL_01825	148.0	7.69313e-43	N/A	N/A
structural_annotation	UHGV-0331258_19	PF05772	N/A	N/A	N/A	N/A
PHROG	UHGV-0331258_20	phrog_14970	270.9	0	N/A	unknown function
UniRef90	UHGV-0331258_20	UniRef90_A0A015RRM9	194.0	0	Rad52/22 double-strand break repair family protein	N/A
eggNOG-mapper	UHGV-0331258_20	642492.Clole_0944	212.0	0	double-strand break repair protein	N/A
Pfam	UHGV-0331258_20	PF04098	N/A	N/A	Rad52/22 family double-strand break repair protein	Rad52_Rad22
COG	UHGV-0331258_20	COG4712	N/A	N/A	Predicted ssDNA annealing protein, contains HHH motif, Rad42/Rad22/RecT/erf family	N/A
structural_annotation	UHGV-0331258_20	PF04098,TIGR00607,COG4712	N/A	N/A	N/A	N/A
PHROG	UHGV-0331258_23	phrog_4433	138.1	0	N/A	unknown function
eggNOG-mapper	UHGV-0331258_23	394503.Ccel_3068	153.0	1.4013e-44	regulation of DNA-templated transcription, elongation	N/A
COG	UHGV-0331258_23	COG5164	N/A	N/A	Transcription elongation factor SPT5	N/A
KOfam	UHGV-0331258_25	K07741	112.8	7.2e-33	antB; anti-repressor protein	N/A
PHROG	UHGV-0331258_25	phrog_130	261.2	0	anti-repressor Ant	transcription regulation
UniRef90	UHGV-0331258_25	UniRef90_A0A6N9QEI3	332.0	0	Phage repressor protein/antirepressor Ant	N/A
eggNOG-mapper	UHGV-0331258_25	1321778.HMPREF1982_02476	311.0	0	BRO family, N-terminal domain	N/A
Pfam	UHGV-0331258_25	PF02498	N/A	N/A	BRO family, N-terminal domain	Bro-N
Pfam	UHGV-0331258_25	PF03374	N/A	N/A	Phage antirepressor protein KilAC domain	ANT
COG	UHGV-0331258_25	COG3617	N/A	N/A	Prophage antirepressor	N/A
structural_annotation	UHGV-0331258_25	PF03374,PF02498,TIGR02681,COG3645	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0331258_26	PF01381,NF041951,COG1476	N/A	N/A	N/A	N/A
KOfam	UHGV-0331258_27	K22300	66.1	7.9e-19	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	N/A
PHROG	UHGV-0331258_27	phrog_8	57.2	4.3e-16	transcriptional regulator	transcription regulation
UniRef90	UHGV-0331258_27	UniRef90_A0A417TUS3	89.4	2.74e-20	XRE family transcriptional regulator	N/A
eggNOG-mapper	UHGV-0331258_27	1121468.AUBR01000055_gene1430	66.2	0.00000000000643	Helix-turn-helix XRE-family like proteins	N/A
PADLOC	UHGV-0331258_27	retron_type_VI_hth_cluster2_1	40.8	0.000000000059	N/A	Retron
Pfam	UHGV-0331258_27	PF12844	N/A	N/A	Helix-turn-helix domain	HTH_19
COG	UHGV-0331258_27	COG1396	N/A	N/A	Transcriptional regulator, contains XRE-family HTH domain	N/A
structural_annotation	UHGV-0331258_27	PF13560,MF_00535,NF041951,COG3655	N/A	N/A	N/A	N/A
PHROG	UHGV-0331258_28	phrog_14556	44.4	0.0000000000015	N/A	unknown function
eggNOG-mapper	UHGV-0331258_28	697281.Mahau_2532	71.2	0.00000000000187	beta-lactamase domain protein	N/A
COG	UHGV-0331258_28	COG2333	N/A	N/A	DNA uptake channel protein ComEC C-terminal domain, metallo-beta-lactamase superfamily	N/A
KOfam	UHGV-0331258_30	K14059	235.7	0	int; integrase	N/A
PHROG	UHGV-0331258_30	phrog_1	203.5	0	integrase	integration and excision
UniRef90	UHGV-0331258_30	UniRef90_UPI00164AE456	340.0	0	site-specific integrase	N/A
eggNOG-mapper	UHGV-0331258_30	1321814.HMPREF9089_00905	197.0	0	Phage integrase, N-terminal SAM-like domain	N/A
Pfam	UHGV-0331258_30	PF14659	N/A	N/A	Phage integrase, N-terminal SAM-like domain	Phage_int_SAM_3
Pfam	UHGV-0331258_30	PF00589	N/A	N/A	Phage integrase family	Phage_integrase
COG	UHGV-0331258_30	COG0582	N/A	N/A	Integrase/recombinase, includes phage integrase	N/A
structural_annotation	UHGV-0331258_30	PF00589,PF14659,MF_02055,TIGR02224,COG4974	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0331258_31	445972.ANACOL_01884	59.7	0.000000005	N/A	N/A
eggNOG-mapper	UHGV-0331258_32	1408437.JNJN01000043_gene802	116.0	4.58e-32	N/A	N/A
PHROG	UHGV-0331258_33	phrog_16490	182.5	0	N/A	unknown function
eggNOG-mapper	UHGV-0331258_33	1408437.JNJN01000043_gene803	167.0	0	N/A	N/A
eggNOG-mapper	UHGV-0331258_35	1408437.JNJN01000043_gene805	103.0	2.8e-27	N/A	N/A
UniRef90	UHGV-0331258_36	UniRef90_UPI0004E194C7	94.0	6.54e-24	LuxR C-terminal-related transcriptional regulator	N/A
Pfam	UHGV-0331258_36	PF00196	N/A	N/A	Bacterial regulatory proteins, luxR family	GerE
structural_annotation	UHGV-0331258_36	PF13404,TIGR01636	N/A	N/A	N/A	N/A
UniRef90	UHGV-0331258_37	UniRef90_UPI0004E190A4	571.0	0	peptidoglycan DD-metalloendopeptidase family protein	N/A
eggNOG-mapper	UHGV-0331258_37	1408437.JNJN01000060_gene452	571.0	0	heme binding	N/A
COG	UHGV-0331258_37	COG0503	N/A	N/A	Adenine/guanine phosphoribosyltransferase or related PRPP-binding protein	N/A
KOfam	UHGV-0331258_39	K01447	98.9	7.3e-29	xlyAB; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]	N/A
PHROG	UHGV-0331258_39	phrog_9611	121.1	1e-35	endolysin	lysis
UniRef90	UHGV-0331258_39	UniRef90_R8VXN8	262.0	0	N-acetylmuramoyl-L-alanine amidase domain-containing protein	N/A
eggNOG-mapper	UHGV-0331258_39	1203606.HMPREF1526_02025	262.0	0	Ami_2	N/A
Pfam	UHGV-0331258_39	PF01510	N/A	N/A	N-acetylmuramoyl-L-alanine amidase	Amidase_2
COG	UHGV-0331258_39	COG3023	N/A	N/A	N-acetyl-anhydromuramyl-L-alanine amidase AmpD	N/A
structural_annotation	UHGV-0331258_39	PF01510,MF_04111,NF008758,COG5632	N/A	N/A	N/A	N/A
PHROG	UHGV-0331258_40	phrog_9467	191.3	0	N/A	unknown function
UniRef90	UHGV-0331258_40	UniRef90_A0A336QAM4	166.0	0	SAM-dependent methyltransferase	N/A
eggNOG-mapper	UHGV-0331258_40	1226322.HMPREF1545_00781	185.0	0	N/A	N/A
Pfam	UHGV-0331258_40	PF13876	N/A	N/A	N/A	Phage_gp49_66
dbAPIS	UHGV-0331258_40	APIS043	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0331258_40	PF13876	N/A	N/A	N/A	N/A
PHROG	UHGV-0331258_41	phrog_199	57.5	1.8e-16	holin	lysis
UniRef90	UHGV-0331258_41	UniRef90_UPI00189A7512	243.0	0	phage holin family protein	N/A
eggNOG-mapper	UHGV-0331258_41	428126.CLOSPI_02191	121.0	5.77e-33	Bacteriophage holin family	N/A
Pfam	UHGV-0331258_41	PF05105	N/A	N/A	Bacteriophage holin family	Phage_holin_4_1
NCBIFam	UHGV-0331258_41	TIGR01593.1	N/A	N/A	toxin secretion/phage lysis holin	N/A
structural_annotation	UHGV-0331258_41	PF05105,TIGR01593,COG4824	N/A	N/A	N/A	N/A
KOfam	UHGV-0331258_42	K20846	51.6	3.8e-33	cgkA; kappa-carrageenase [EC:3.2.1.83]	N/A
PHROG	UHGV-0331258_42	phrog_215	91.4	0	structural protein with Ig domain	head and packaging
UniRef90	UHGV-0331258_42	UniRef90_A0A7G8TD59	116.0	1.65e-22	Ig-like domain-containing protein	N/A
eggNOG-mapper	UHGV-0331258_42	657322.FPR_13550	136.0	7.13e-32	Bacterial Ig-like domain (group 2)	N/A
Pfam	UHGV-0331258_42	PF02368	N/A	N/A	Bacterial Ig-like domain (group 2)	Big_2
COG	UHGV-0331258_42	COG5492	N/A	N/A	N/A	N/A

All viral genomes

ID	Representative?	Length (bps)	% GC Content	CheckV Completeness	geNomad Score
UHGV-0331258	Yes	30,715	47	69	1