vOTU vOTU-106640

vOTU: vOTU-106640

Overview

Genome (FASTA) Annotation Track (GFF) Proteins (FASTA) Protein Annotation (TSV)

Cluster properties
vOTU ID	vOTU-106640
Number of genomes	1
Taxonomy (ICTV)	Bacteria → Firmicutes_A → Clostridia → Oscillospirales → Oscillospiraceae → CAG-170
Taxonomy (UHGV)	vFAM-00004 → vSUBFAM-00020 → vGENUS-00117 → vOTU-106640
Host lineage	Bacteria → Firmicutes_A → Clostridia → Oscillospirales → Oscillospiraceae → CAG-170 → CAG-170 sp000432135
Host range breadth	Species
Lifestyle	temperate (Evidence: BACPHLIP)

Representative genome
Genome ID	UHGV-1483230
Biosample ID	SAMEA2737798
Genome length (bp)	20,930 bps
CheckV completeness	50.45% (Medium-quality)
CDS count	40
CDS density	90.86%
tRNA count	0
Integrase	No
Viral confidence	Confident

Host assignment details
Assignment method	CRISPR
CRISPR-predicted host lineage	Bacteria → Firmicutes_A → Clostridia → Oscillospirales → Oscillospiraceae → CAG-170 → CAG-170 sp000432135	Total connections	501	Host agreement	91.42
PHIST-predicted host lineage	Bacteria → Firmicutes_A → Clostridia → Oscillospirales → Oscillospiraceae → CAG-170	Total connections	18	Host agreement	77.78

Representative genome content

Select to view: Genome Viewer Functional Annotation

Genome view (completeness: 50.45)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
eggNOG-mapper	UHGV-1483230_1	665956.HMPREF1032_03087	58.5	0.00000000272	N/A	N/A
PHROG	UHGV-1483230_2	phrog_3136	98.4	5e-29	N/A	unknown function
UniRef90	UHGV-1483230_2	UniRef90_A0A3D0HBD2	94.0	1.42e-21	ASCH domain-containing protein	N/A
eggNOG-mapper	UHGV-1483230_2	97139.C824_00742	72.4	0.0000000000000313	The globular domain of the protein is located near the polypeptide exit tunnel on the outside of the subunit, while an extended beta-hairpin is found that lines the wall of the exit tunnel in the center of the 70S ribosome	N/A
COG	UHGV-1483230_2	COG4933	N/A	N/A	Predicted transcriptional regulator, contains an HTH and PUA-like domains	N/A
structural_annotation	UHGV-1483230_2	PF04266,MF_00684,NF008917,COG4933	N/A	N/A	N/A	N/A
PHROG	UHGV-1483230_3	phrog_424	98.3	8.5e-29	phosphoadenosine phosphosulfate reductase	moron, auxiliary metabolic gene and host takeover
UniRef90	UHGV-1483230_3	UniRef90_A0A1Q6JI14	358.0	0	Phosphoadenosine phosphosulfate reductase	N/A
eggNOG-mapper	UHGV-1483230_3	1410628.JNKS01000054_gene544	305.0	0	N/A	N/A
Pfam	UHGV-1483230_3	PF01507	N/A	N/A	Phosphoadenosine phosphosulfate reductase family	PAPS_reduct
COG	UHGV-1483230_3	COG0175	N/A	N/A	3'-phosphoadenosine 5'-phosphosulfate sulfotransferase (PAPS reductase)/FAD synthetase or related enzyme	N/A
structural_annotation	UHGV-1483230_3	PF01507,MF_01161,NF006327,COG0175	N/A	N/A	N/A	N/A
PHROG	UHGV-1483230_5	phrog_16304	55.9	5.4e-16	N/A	unknown function
UniRef90	UHGV-1483230_5	UniRef90_A0A3D3Y5P0	218.0	0	N/A	N/A
Pfam	UHGV-1483230_5	PF19808	N/A	N/A	N/A	DUF6291
COG	UHGV-1483230_5	COG1403	N/A	N/A	5-methylcytosine-specific restriction endonuclease McrA	N/A
structural_annotation	UHGV-1483230_5	PF19808	N/A	N/A	N/A	N/A
KOfam	UHGV-1483230_6	K03111	150.7	1.26117e-44	ssb; single-strand DNA-binding protein	N/A
PHROG	UHGV-1483230_6	phrog_44	151.8	2.8026e-45	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1483230_6	UniRef90_R6LVK0	198.0	0	Single-stranded DNA-binding protein	N/A
eggNOG-mapper	UHGV-1483230_6	1007096.BAGW01000023_gene151	185.0	0	Single-strand binding protein family	N/A
Pfam	UHGV-1483230_6	PF00436	N/A	N/A	Single-strand binding protein family	SSB
NCBIFam	UHGV-1483230_6	TIGR00621.2	N/A	N/A	single-stranded DNA-binding protein	N/A
COG	UHGV-1483230_6	COG0629	N/A	N/A	Single-stranded DNA-binding protein	N/A
HAMAP	UHGV-1483230_6	MF_00984	N/A	N/A	Single-stranded DNA-binding protein	N/A
structural_annotation	UHGV-1483230_6	PF00436,MF_00984,NF005241,COG0629	N/A	N/A	N/A	N/A
KOfam	UHGV-1483230_7	K07455	280.6	0	recT; recombination protein RecT	N/A
PHROG	UHGV-1483230_7	phrog_148	272.2	0	RecT-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1483230_7	UniRef90_A0A1Y4W4R3	387.0	0	Recombinase RecT	N/A
eggNOG-mapper	UHGV-1483230_7	1226322.HMPREF1545_00015	343.0	0	RecT family	N/A
Pfam	UHGV-1483230_7	PF03837	N/A	N/A	RecT family	RecT
NCBIFam	UHGV-1483230_7	TIGR00616.1	N/A	N/A	recombinase, phage RecT family	N/A
COG	UHGV-1483230_7	COG3723	N/A	N/A	Recombinational DNA repair protein RecT	N/A
structural_annotation	UHGV-1483230_7	PF03837,NF007351,COG3723	N/A	N/A	N/A	N/A
PHROG	UHGV-1483230_8	phrog_434	328.3	0	RecE-like recombination exonuclease	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1483230_8	UniRef90_A0A1Y4W4B5	421.0	0	YqaJ domain-containing protein	N/A
eggNOG-mapper	UHGV-1483230_8	428125.CLOLEP_01823	342.0	0	YqaJ viral recombinase family	N/A
Pfam	UHGV-1483230_8	PF09588	N/A	N/A	YqaJ-like viral recombinase domain	YqaJ
NCBIFam	UHGV-1483230_8	TIGR03033.1	N/A	N/A	putative phage-type endonuclease	N/A
COG	UHGV-1483230_8	COG5377	N/A	N/A	Phage-related protein, predicted endonuclease	N/A
structural_annotation	UHGV-1483230_8	PF09588,MF_03030,TIGR03033,COG5377	N/A	N/A	N/A	N/A
KOfam	UHGV-1483230_9	K19719	40.6	0.0000000000045	COL2A; collagen type II alpha	N/A
PHROG	UHGV-1483230_9	phrog_4433	226.7	0	N/A	unknown function
eggNOG-mapper	UHGV-1483230_9	394503.Ccel_3068	110.0	5.34e-27	regulation of DNA-templated transcription, elongation	N/A
Pfam	UHGV-1483230_9	PF01391	N/A	N/A	Collagen triple helix repeat (20 copies)	Collagen
COG	UHGV-1483230_9	COG5164	N/A	N/A	Transcription elongation factor SPT5	N/A
structural_annotation	UHGV-1483230_9	NF007410	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-1483230_13	760568.Desku_0919	113.0	1.01e-28	N/A	N/A
structural_annotation	UHGV-1483230_13	PF03787,TIGR02581,COG1604	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-1483230_14	1235835.C814_03153	74.7	5.02e-17	N/A	N/A
structural_annotation	UHGV-1483230_14	PF09035,NF040990	N/A	N/A	N/A	N/A
KOfam	UHGV-1483230_15	K22300	45.4	0.0000000000016	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	N/A
PHROG	UHGV-1483230_15	phrog_8	42.5	0.000000000014	transcriptional regulator	transcription regulation
UniRef90	UHGV-1483230_15	UniRef90_A0A810PZI0	87.8	1.41e-21	HTH cro/C1-type domain-containing protein	N/A
eggNOG-mapper	UHGV-1483230_15	1122143.AUEG01000004_gene1250	51.6	0.000000214	Helix-turn-helix domain	N/A
Pfam	UHGV-1483230_15	PF13560	N/A	N/A	Helix-turn-helix domain	HTH_31
COG	UHGV-1483230_15	COG1396	N/A	N/A	Transcriptional regulator, contains XRE-family HTH domain	N/A
structural_annotation	UHGV-1483230_15	PF01381,NF041951,COG1476	N/A	N/A	N/A	N/A
KOfam	UHGV-1483230_17	K22300	45.4	0.0000000000017	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	N/A
PHROG	UHGV-1483230_17	phrog_8	42.2	0.000000000018	transcriptional regulator	transcription regulation
UniRef90	UHGV-1483230_17	UniRef90_A0A810Q1T1	56.6	0.000000075	HTH cro/C1-type domain-containing protein	N/A
eggNOG-mapper	UHGV-1483230_17	552396.HMPREF0863_02446	51.2	0.000000392	Cro/C1-type HTH DNA-binding domain	N/A
Pfam	UHGV-1483230_17	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
structural_annotation	UHGV-1483230_17	PF01381,MF_00535,NF007257,COG3655	N/A	N/A	N/A	N/A
UniRef90	UHGV-1483230_21	UniRef90_W7KTT8	66.2	0.00000000221	Adhesin_P1_N domain-containing protein	N/A
eggNOG-mapper	UHGV-1483230_21	1298920.KI911353_gene413	142.0	1.11e-39	N/A	N/A
Pfam	UHGV-1483230_21	PF13248	N/A	N/A	zinc-ribbon domain	zf-ribbon_3
Pfam	UHGV-1483230_21	PF13240	N/A	N/A	zinc-ribbon domain	zinc_ribbon_2
Pfam	UHGV-1483230_23	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
COG	UHGV-1483230_23	COG1396	N/A	N/A	Transcriptional regulator, contains XRE-family HTH domain	N/A
structural_annotation	UHGV-1483230_23	PF12844	N/A	N/A	N/A	N/A
KOfam	UHGV-1483230_24	K14059	129.3	4.7e-38	int; integrase	N/A
PHROG	UHGV-1483230_24	phrog_1	139.2	3.39997e-41	integrase	integration and excision
UniRef90	UHGV-1483230_24	UniRef90_UPI00195CC1EE	376.0	0	tyrosine-type recombinase/integrase	N/A
eggNOG-mapper	UHGV-1483230_24	1235835.C814_03141	192.0	0	Belongs to the 'phage' integrase family	N/A
Pfam	UHGV-1483230_24	PF00589	N/A	N/A	Phage integrase family	Phage_integrase
COG	UHGV-1483230_24	COG0582	N/A	N/A	Integrase/recombinase, includes phage integrase	N/A
structural_annotation	UHGV-1483230_24	PF00589,MF_01807,TIGR02224,COG4973	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-1483230_25	1226322.HMPREF1545_00079	108.0	5.63e-29	N/A	N/A
structural_annotation	UHGV-1483230_26	PF12510	N/A	N/A	N/A	N/A
PHROG	UHGV-1483230_27	phrog_20016	181.3	0	N/A	unknown function
UniRef90	UHGV-1483230_27	UniRef90_A0A285PT46	189.0	0	Tumour necrosis factor-like domain	N/A
eggNOG-mapper	UHGV-1483230_27	1226322.HMPREF1545_00077	166.0	0	N/A	N/A
structural_annotation	UHGV-1483230_27	PF18573,NF033147	N/A	N/A	N/A	N/A
PHROG	UHGV-1483230_29	phrog_16490	129.1	6.3e-39	N/A	unknown function
eggNOG-mapper	UHGV-1483230_29	1408437.JNJN01000043_gene803	129.0	8.15e-34	N/A	N/A
PHROG	UHGV-1483230_30	phrog_22984	79.0	1.9e-23	N/A	unknown function
PHROG	UHGV-1483230_31	phrog_21718	102.9	2.6e-30	N/A	unknown function
eggNOG-mapper	UHGV-1483230_31	476272.RUMHYD_01768	63.5	0.000000000127	N/A	N/A
PHROG	UHGV-1483230_32	phrog_3754	97.3	1.5e-28	N/A	unknown function
eggNOG-mapper	UHGV-1483230_32	476272.RUMHYD_01764	164.0	0	N/A	N/A
structural_annotation	UHGV-1483230_33	PF16509,MF_00245,NF001066,COG2739	N/A	N/A	N/A	N/A
PHROG	UHGV-1483230_34	phrog_14030	144.9	4.80645e-43	N/A	unknown function
UniRef90	UHGV-1483230_34	UniRef90_R6LL81	249.0	0	SLH domain-containing protein	N/A
eggNOG-mapper	UHGV-1483230_34	1121866.AUGK01000003_gene1444	92.8	6.95e-19	amidase activity	N/A
COG	UHGV-1483230_34	COG1705	N/A	N/A	Flagellum-specific peptidoglycan hydrolase FlgJ	N/A
PHROG	UHGV-1483230_35	phrog_6918	95.0	4.9e-28	holin	lysis
UniRef90	UHGV-1483230_35	UniRef90_A0A316QCY7	103.0	1.22e-26	Holin	N/A
eggNOG-mapper	UHGV-1483230_35	1297617.JPJD01000020_gene301	102.0	8.51e-27	Bacteriophage holin of superfamily 6 (Holin_LLH)	N/A
Pfam	UHGV-1483230_35	PF09682	N/A	N/A	Bacteriophage holin of superfamily 6 (Holin_LLH)	Phage_holin_6_1
structural_annotation	UHGV-1483230_35	PF09682,TIGR01673	N/A	N/A	N/A	N/A
Pfam	UHGV-1483230_38	PF07484	N/A	N/A	Phage Tail Collar Domain	Collar
structural_annotation	UHGV-1483230_38	PF07484	N/A	N/A	N/A	N/A
Pfam	UHGV-1483230_39	PF07484	N/A	N/A	Phage Tail Collar Domain	Collar
structural_annotation	UHGV-1483230_39	PF20055,MF_03008,NF010730,COG3940	N/A	N/A	N/A	N/A
PHROG	UHGV-1483230_40	phrog_18725	99.6	2.7e-29	N/A	unknown function
eggNOG-mapper	UHGV-1483230_40	693746.OBV_18220	125.0	3.3e-34	N/A	N/A

All viral genomes

ID	Representative?	Length (bps)	% GC Content	CheckV Completeness	geNomad Score
UHGV-1483230	Yes	20,930	55	50	1