vOTU vOTU-106753

vOTU: vOTU-106753

Overview

Genome (FASTA) Annotation Track (GFF) Proteins (FASTA) Protein Annotation (TSV)

Cluster properties
vOTU ID	vOTU-106753
Number of genomes	1
Taxonomy (ICTV)	Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes
Taxonomy (UHGV)	vFAM-00004 → vSUBFAM-00914 → vOTU-106753
Host lineage	Bacteria → Firmicutes_A → Clostridia → Oscillospirales → Oscillospiraceae → Faecousia → Faecousia sp900544705
Host range breadth	Species
Lifestyle	temperate (evidence: BACPHLIP)

Representative genome
Genome ID	UHGV-1874664
Biosample ID	SAMN18819061
Genome length (bp)	24,805 bps
CheckV completeness	63.08% (Medium-quality)
CDS count	48
CDS density	93.11%
tRNA count	0
Integrase	No
Viral confidence	Confident

Host assignment details
Assignment method	CRISPR
CRISPR-predicted host lineage	Bacteria → Firmicutes_A → Clostridia → Oscillospirales → Oscillospiraceae → Faecousia → Faecousia sp900544705	Total connections	70	Host agreement	94.29
PHIST-predicted host lineage	Bacteria → Firmicutes_A → Clostridia → Oscillospirales → Oscillospiraceae → Faecousia → Faecousia sp900544705	Total connections	1	Host agreement	100

Representative genome content

Select to view: Genome Viewer Functional Annotation

Genome view (completeness: 63.08)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
KOfam	UHGV-1874664_1	K06400	368.2	0	spoIVCA; site-specific DNA recombinase	N/A
PHROG	UHGV-1874664_1	phrog_95	357.7	0	integrase	integration and excision
UniRef90	UHGV-1874664_1	UniRef90_A0A1C6JCC5	541.0	0	Resolvase, N terminal domain	N/A
eggNOG-mapper	UHGV-1874664_1	1235835.C814_03413	399.0	0	Resolvase, N terminal domain	N/A
Pfam	UHGV-1874664_1	PF00239	N/A	N/A	Resolvase, N terminal domain	Resolvase
Pfam	UHGV-1874664_1	PF07508	N/A	N/A	Recombinase	Recombinase
Pfam	UHGV-1874664_1	PF13408	N/A	N/A	Recombinase zinc beta ribbon domain	Zn_ribbon_recom
COG	UHGV-1874664_1	COG1961	N/A	N/A	Site-specific DNA recombinase SpoIVCA/DNA invertase PinE	N/A
structural_annotation	UHGV-1874664_1	PF07508,PF00239,NF041201,COG1961	N/A	N/A	N/A	N/A
Pfam	UHGV-1874664_2	PF13443	N/A	N/A	Cro/C1-type HTH DNA-binding domain	HTH_26
structural_annotation	UHGV-1874664_2	PF00356,TIGR02684,COG3636	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-1874664_4	1410638.JHXJ01000015_gene2445	119.0	7.71e-29	N/A	N/A
structural_annotation	UHGV-1874664_4	PF07718,PF02883,NF007398,COG3121	N/A	N/A	N/A	N/A
KOfam	UHGV-1874664_5	K22300	66.7	4.7e-19	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	N/A
PHROG	UHGV-1874664_5	phrog_8	57.7	2.8e-16	transcriptional regulator	transcription regulation
UniRef90	UHGV-1874664_5	UniRef90_UPI00047CA4D8	86.7	3.57e-19	helix-turn-helix domain-containing protein	N/A
eggNOG-mapper	UHGV-1874664_5	1262914.BN533_01956	91.7	4.24e-22	Helix-turn-helix XRE-family like proteins	N/A
Pfam	UHGV-1874664_5	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
COG	UHGV-1874664_5	COG1396	N/A	N/A	Transcriptional regulator, contains XRE-family HTH domain	N/A
structural_annotation	UHGV-1874664_5	PF13560,MF_00535,NF007257,COG1396	N/A	N/A	N/A	N/A
UniRef90	UHGV-1874664_6	UniRef90_UPI0018C81604	63.9	0.00000000000529	helix-turn-helix domain-containing protein	N/A
eggNOG-mapper	UHGV-1874664_6	718252.FP2_06860	62.8	0.00000000000224	N/A	N/A
Pfam	UHGV-1874664_6	PF13443	N/A	N/A	Cro/C1-type HTH DNA-binding domain	HTH_26
structural_annotation	UHGV-1874664_6	PF21291,NF041951,COG1476	N/A	N/A	N/A	N/A
PHROG	UHGV-1874664_8	phrog_585	90.6	1.6e-26	N/A	unknown function
UniRef90	UHGV-1874664_8	UniRef90_A0A413B154	127.0	2.08e-35	N/A	N/A
eggNOG-mapper	UHGV-1874664_8	1121105.ATXL01000006_gene1354	84.7	2.05e-19	N/A	N/A
Pfam	UHGV-1874664_8	PF10711	N/A	N/A	N/A	DUF2513
structural_annotation	UHGV-1874664_8	PF10711,TIGR04176,COG1695	N/A	N/A	N/A	N/A
Pfam	UHGV-1874664_13	PF04448	N/A	N/A	N/A	DUF551
PHROG	UHGV-1874664_16	phrog_3657	282.8	0	N/A	unknown function
eggNOG-mapper	UHGV-1874664_16	1071073.KI530540_gene3354	211.0	0	N/A	N/A
PHROG	UHGV-1874664_17	phrog_1227	269.9	0	exonuclease	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1874664_17	UniRef90_A0A1Y3RPZ6	457.0	0	N/A	N/A
eggNOG-mapper	UHGV-1874664_17	1567013.A0A0A7RVR3_9CAUD	187.0	0	N/A	N/A
Pfam	UHGV-1874664_17	PF12684	N/A	N/A	N/A	DUF3799
structural_annotation	UHGV-1874664_17	PF12684,TIGR01896,COG4343	N/A	N/A	N/A	N/A
KOfam	UHGV-1874664_18	K03111	151.8	7.00649e-45	ssb; single-strand DNA-binding protein	N/A
PHROG	UHGV-1874664_18	phrog_44	152.8	1.4013e-45	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1874664_18	UniRef90_UPI001BB47F69	186.0	0	single-stranded DNA-binding protein	N/A
eggNOG-mapper	UHGV-1874664_18	1226322.HMPREF1545_04080	182.0	0	Single-strand binding protein family	N/A
Pfam	UHGV-1874664_18	PF00436	N/A	N/A	Single-strand binding protein family	SSB
NCBIFam	UHGV-1874664_18	TIGR00621.2	N/A	N/A	single-stranded DNA-binding protein	N/A
COG	UHGV-1874664_18	COG0629	N/A	N/A	Single-stranded DNA-binding protein	N/A
HAMAP	UHGV-1874664_18	MF_00984	N/A	N/A	Single-stranded DNA-binding protein	N/A
structural_annotation	UHGV-1874664_18	PF00436,MF_00984,NF005241,COG0629	N/A	N/A	N/A	N/A
PHROG	UHGV-1874664_19	phrog_15768	59.2	2.6e-17	N/A	unknown function
UniRef90	UHGV-1874664_19	UniRef90_A0A1C6J8D5	123.0	1.79e-30	N/A	N/A
Pfam	UHGV-1874664_19	PF19808	N/A	N/A	N/A	DUF6291
Pfam	UHGV-1874664_19	PF07261	N/A	N/A	Replication initiation and membrane attachment	DnaB_2
NCBIFam	UHGV-1874664_19	TIGR01446.1	N/A	N/A	DnaD domain protein	N/A
COG	UHGV-1874664_19	COG3935	N/A	N/A	DNA replication protein DnaD	N/A
structural_annotation	UHGV-1874664_19	PF19808,PF07261,TIGR01446,COG3935	N/A	N/A	N/A	N/A
UniRef90	UHGV-1874664_20	UniRef90_UPI001C01A488	181.0	0	RusA family crossover junction endodeoxyribonuclease	N/A
eggNOG-mapper	UHGV-1874664_20	561177.ANHYDRO_01396	101.0	9.51e-26	Endodeoxyribonuclease RusA	N/A
COG	UHGV-1874664_20	COG4570	N/A	N/A	Holliday junction resolvase RusA (prophage-encoded endonuclease)	N/A
structural_annotation	UHGV-1874664_20	PF05866,NF007305,COG4570	N/A	N/A	N/A	N/A
PHROG	UHGV-1874664_22	phrog_1008	42.3	1.6e-19	DNA methyltransferase	other
UniRef90	UHGV-1874664_22	UniRef90_UPI001F49AF54	55.8	0.00000488	DNA cytosine methyltransferase	N/A
eggNOG-mapper	UHGV-1874664_22	1235835.C814_01160	97.8	1.04e-21	DNA (cytosine-5-)-methyltransferase activity	N/A
COG	UHGV-1874664_22	COG0270	N/A	N/A	DNA-cytosine methylase	N/A
PHROG	UHGV-1874664_24	phrog_5781	82.5	5.4e-24	N/A	unknown function
UniRef90	UHGV-1874664_24	UniRef90_A0A2V2FSM6	122.0	4.84e-34	Nucleoside 2-deoxyribosyltransferase	N/A
eggNOG-mapper	UHGV-1874664_24	573061.Clocel_3558	94.7	6.53e-24	N/A	N/A
Pfam	UHGV-1874664_24	PF14359	N/A	N/A	N/A	DUF4406
COG	UHGV-1874664_24	COG3613	N/A	N/A	Nucleoside 2-deoxyribosyltransferase	N/A
structural_annotation	UHGV-1874664_24	PF14359,MF_03036,TIGR02133,COG3613	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-1874664_26	397290.C810_05229	53.9	0.00000000574	N/A	N/A
PHROG	UHGV-1874664_28	phrog_5889	41.7	0.000000000015	N/A	unknown function
eggNOG-mapper	UHGV-1874664_28	1235800.C819_00499	74.7	4.76e-16	metal-dependent phosphohydrolase, HD sub domain	N/A
COG	UHGV-1874664_28	COG3481	N/A	N/A	3'-5' exoribonuclease YhaM, can participate in 23S rRNA maturation, HD superfamily	N/A
PHROG	UHGV-1874664_29	phrog_424	102.2	4.9e-30	phosphoadenosine phosphosulfate reductase	moron, auxiliary metabolic gene and host takeover
UniRef90	UHGV-1874664_29	UniRef90_R6PFX4	424.0	0	Putative phage reductase	N/A
eggNOG-mapper	UHGV-1874664_29	272563.CD630_09300	101.0	1.01e-22	N/A	N/A
PADLOC	UHGV-1874664_29	SspD_00001	42.1	0.000000000022	SspD	SSP
COG	UHGV-1874664_29	COG0175	N/A	N/A	3'-phosphoadenosine 5'-phosphosulfate sulfotransferase (PAPS reductase)/FAD synthetase or related enzyme	N/A
structural_annotation	UHGV-1874664_29	PF01507,MF_00063,NF006327,COG0175	N/A	N/A	N/A	N/A
PHROG	UHGV-1874664_31	phrog_22543	49.9	0.000000000000056	N/A	unknown function
PHROG	UHGV-1874664_32	phrog_3136	114.0	7.1e-34	N/A	unknown function
UniRef90	UHGV-1874664_32	UniRef90_A0A6N7TMC2	103.0	1.91e-24	ASCH domain-containing protein	N/A
eggNOG-mapper	UHGV-1874664_32	97139.C824_00742	68.9	0.00000000000341	The globular domain of the protein is located near the polypeptide exit tunnel on the outside of the subunit, while an extended beta-hairpin is found that lines the wall of the exit tunnel in the center of the 70S ribosome	N/A
COG	UHGV-1874664_32	COG4933	N/A	N/A	Predicted transcriptional regulator, contains an HTH and PUA-like domains	N/A
structural_annotation	UHGV-1874664_32	PF08819,MF_00684,NF008917,COG4933	N/A	N/A	N/A	N/A
UniRef90	UHGV-1874664_33	UniRef90_UPI000DA5F351	103.0	2.22e-27	Lar family restriction alleviation protein	N/A
PHROG	UHGV-1874664_38	phrog_36	65.0	1.3e-18	transcriptional regulator	transcription regulation
structural_annotation	UHGV-1874664_38	PF07374,TIGR01636	N/A	N/A	N/A	N/A
UniRef90	UHGV-1874664_39	UniRef90_UPI0009523D83	138.0	3.97e-39	helix-turn-helix domain containing protein	N/A
eggNOG-mapper	UHGV-1874664_39	1226322.HMPREF1545_00042	135.0	7.67e-39	N/A	N/A
structural_annotation	UHGV-1874664_39	PF13542	N/A	N/A	N/A	N/A
KOfam	UHGV-1874664_40	K06909	116.2	3.6e-34	xtmB; phage terminase large subunit	N/A
PHROG	UHGV-1874664_40	phrog_2	152.2	5.60519e-45	terminase large subunit	head and packaging
UniRef90	UHGV-1874664_40	UniRef90_A0A3D3Y0N9	575.0	0	PBSX family phage terminase large subunit	N/A
eggNOG-mapper	UHGV-1874664_40	1226322.HMPREF1545_00043	555.0	0	Phage terminase large subunit	N/A
Pfam	UHGV-1874664_40	PF03237	N/A	N/A	Terminase large subunit, T4likevirus-type, N-terminal	Terminase_6N
Pfam	UHGV-1874664_40	PF14890	N/A	N/A	Intein splicing domain	Intein_splicing
NCBIFam	UHGV-1874664_40	TIGR01547.1	N/A	N/A	PBSX family phage terminase large subunit	N/A
COG	UHGV-1874664_40	COG1783	N/A	N/A	Phage terminase large subunit	N/A
structural_annotation	UHGV-1874664_40	PF04466,PF20441,MF_04148,TIGR01547,TIGR01445,COG1783	N/A	N/A	N/A	N/A
PHROG	UHGV-1874664_41	phrog_15471	145.5	2.29813e-43	HNH endonuclease	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1874664_41	UniRef90_A0A357AZP2	185.0	0	HNH endonuclease	N/A
eggNOG-mapper	UHGV-1874664_41	1154757.Q5C_03095	132.0	6.86e-36	HNH endonuclease	N/A
Pfam	UHGV-1874664_41	PF13392	N/A	N/A	HNH endonuclease	HNH_3
structural_annotation	UHGV-1874664_41	PF13392,PF10013,COG4068	N/A	N/A	N/A	N/A
UniRef90	UHGV-1874664_42	UniRef90_A0A3F2ZWC3	55.8	0.00000000429	Phage terminase large subunit	N/A
PHROG	UHGV-1874664_44	phrog_533	194.6	0	portal protein	head and packaging
UniRef90	UHGV-1874664_44	UniRef90_UPI000680A1DB	555.0	0	phage portal protein	N/A
eggNOG-mapper	UHGV-1874664_44	693746.OBV_18040	389.0	0	N/A	N/A
structural_annotation	UHGV-1874664_44	PF05133,MF_04120,TIGR01542,COG5511	N/A	N/A	N/A	N/A
PHROG	UHGV-1874664_45	phrog_581	230.6	0	minor head protein	head and packaging
UniRef90	UHGV-1874664_45	UniRef90_UPI0006814CA4	485.0	0	phage minor capsid protein	N/A
eggNOG-mapper	UHGV-1874664_45	693746.OBV_18050	501.0	0	Phage minor capsid protein 2	N/A
Pfam	UHGV-1874664_45	PF06152	N/A	N/A	Phage minor capsid protein 2	Phage_min_cap2
Pfam	UHGV-1874664_45	PF18810	N/A	N/A	phage-Barnase-EndoU-ColicinE5/D-RelE like nuclease2	PBECR2
COG	UHGV-1874664_45	COG2369	N/A	N/A	N/A	N/A
structural_annotation	UHGV-1874664_45	PF06152,PF18825	N/A	N/A	N/A	N/A
PHROG	UHGV-1874664_46	phrog_3675	110.8	4.7e-33	N/A	unknown function
UniRef90	UHGV-1874664_46	UniRef90_UPI001C02868E	128.0	7.53e-36	YjcQ family protein	N/A
eggNOG-mapper	UHGV-1874664_46	1235799.C818_04221	130.0	1.46e-37	YjcQ protein	N/A
Pfam	UHGV-1874664_46	PF09639	N/A	N/A	YjcQ protein	YjcQ
PHROG	UHGV-1874664_47	phrog_194	83.2	3.9e-24	head scaffolding protein	head and packaging
UniRef90	UHGV-1874664_47	UniRef90_UPI00164D9F94	226.0	0	phage scaffolding protein	N/A
eggNOG-mapper	UHGV-1874664_47	693746.OBV_18080	175.0	0	COG NOG36366 non supervised orthologous group	N/A
Pfam	UHGV-1874664_47	PF06810	N/A	N/A	Phage minor structural protein GP20	Phage_GP20
structural_annotation	UHGV-1874664_47	PF06810	N/A	N/A	N/A	N/A
PHROG	UHGV-1874664_48	phrog_544	295.2	0	major head protein	head and packaging
UniRef90	UHGV-1874664_48	UniRef90_UPI0019576143	359.0	0	N4-gp56 family major capsid protein	N/A
eggNOG-mapper	UHGV-1874664_48	411471.SUBVAR_06940	360.0	0	N/A	N/A
NCBIFam	UHGV-1874664_48	TIGR04387.1	N/A	N/A	N4-gp56 family major capsid protein	N/A
structural_annotation	UHGV-1874664_48	PF05065,MF_04119,TIGR04387,COG4653	N/A	N/A	N/A	N/A

All viral genomes

ID	Representative?	Length (bps)	% GC Content	CheckV Completeness	geNomad Score
UHGV-1874664	Yes	24,805	53	63	1