vOTU vOTU-106774

vOTU: vOTU-106774

Overview

Genome (FASTA) Annotation Track (GFF) Proteins (FASTA) Protein Annotation (TSV)

Cluster properties
vOTU ID	vOTU-106774
Number of genomes	1
Taxonomy (ICTV)	Bacteria → Firmicutes_A → Clostridia
Taxonomy (UHGV)	vFAM-00041 → vSUBFAM-00274 → vGENUS-04813 → vOTU-106774
Host lineage	Bacteria → Firmicutes_A → Clostridia → Peptostreptococcales → Peptostreptococcaceae → Intestinibacter → Intestinibacter bartlettii
Host range breadth	Species
Lifestyle	temperate (Evidence: BACPHLIP)

Representative genome
Genome ID	UHGV-0339314
Biosample ID	N/A
Genome length (bp)	23,962 bps
CheckV completeness	59.26% (Medium-quality)
CDS count	31
CDS density	90.06%
tRNA count	0
Integrase	No
Viral confidence	Confident

Host assignment details
Assignment method	CRISPR
CRISPR-predicted host lineage	Bacteria → Firmicutes_A → Clostridia → Peptostreptococcales → Peptostreptococcaceae → Intestinibacter → Intestinibacter bartlettii	Total connections	103	Host agreement	94.17
PHIST-predicted host lineage	Bacteria → Firmicutes_A → Clostridia	Total connections	5	Host agreement	80

Representative genome content

Select to view: Genome Viewer Functional Annotation

Genome view (completeness: 59.26)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
structural_annotation	UHGV-0339314_2	PF09889	N/A	N/A	N/A	N/A
PHROG	UHGV-0339314_3	phrog_374	77.1	3e-22	HNH endonuclease	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0339314_3	UniRef90_A0A1C5YZ22	202.0	0	HTH_Tnp_Tc3_1 domain-containing protein	N/A
eggNOG-mapper	UHGV-0339314_3	411467.BACCAP_02633	72.8	0.000000000000195	N/A	N/A
structural_annotation	UHGV-0339314_3	PF02796,TIGR04381,COG2771	N/A	N/A	N/A	N/A
KOfam	UHGV-0339314_5	K02314	229.6	0	dnaB; replicative DNA helicase [EC:5.6.2.3]	N/A
PHROG	UHGV-0339314_5	phrog_19	235.6	0	DnaB-like replicative helicase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0339314_5	UniRef90_A0A5P3XF33	402.0	0	DNA helicase	N/A
eggNOG-mapper	UHGV-0339314_5	272563.CD630_06260	250.0	0	DnaB-like helicase N terminal domain	N/A
Pfam	UHGV-0339314_5	PF00772	N/A	N/A	DnaB-like helicase N terminal domain	DnaB
Pfam	UHGV-0339314_5	PF03796	N/A	N/A	DnaB-like helicase C terminal domain	DnaB_C
COG	UHGV-0339314_5	COG0305	N/A	N/A	Replicative DNA helicase	N/A
structural_annotation	UHGV-0339314_5	PF03796,PF00772,MF_04155,TIGR00665,COG0305	N/A	N/A	N/A	N/A
PHROG	UHGV-0339314_6	phrog_270	116.5	2.6e-34	replication initiation protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0339314_6	UniRef90_UPI00068AA660	103.0	7.77e-23	helix-turn-helix domain-containing protein	N/A
eggNOG-mapper	UHGV-0339314_6	1408823.AXUS01000025_gene2662	112.0	3.02e-26	DNA-binding transcription factor activity	N/A
Pfam	UHGV-0339314_6	PF13730	N/A	N/A	Helix-turn-helix domain	HTH_36
COG	UHGV-0339314_6	COG0640	N/A	N/A	DNA-binding transcriptional regulator, ArsR family	N/A
structural_annotation	UHGV-0339314_6	PF13730,MF_01909,NF040939,COG1846	N/A	N/A	N/A	N/A
PHROG	UHGV-0339314_7	phrog_582	42.0	0.000000000018	Arc-like repressor	transcription regulation
Pfam	UHGV-0339314_7	PF07878	N/A	N/A	CopG-like RHH_1 or ribbon-helix-helix domain, RHH_5	RHH_5
structural_annotation	UHGV-0339314_7	PF07878,TIGR04563,COG4877	N/A	N/A	N/A	N/A
PHROG	UHGV-0339314_8	phrog_155	155.0	0	Erf-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0339314_8	UniRef90_UPI0018A93168	261.0	0	ERF family protein	N/A
eggNOG-mapper	UHGV-0339314_8	929506.CbC4_1193	207.0	0	ERF superfamily	N/A
Pfam	UHGV-0339314_8	PF04404	N/A	N/A	ERF superfamily	ERF
structural_annotation	UHGV-0339314_8	PF04404,TIGR00607,COG5055	N/A	N/A	N/A	N/A
PHROG	UHGV-0339314_9	phrog_59	160.8	0	HNH endonuclease	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0339314_9	UniRef90_W1XZM1	160.0	0	Homing nuclease	N/A
eggNOG-mapper	UHGV-0339314_9	767806.D7PQ37_9CAUD	117.0	8.12e-31	HNH endonuclease	N/A
PADLOC	UHGV-0339314_9	HEase_00016	97.7	2.1e-28	homing endonuclease	RM
Pfam	UHGV-0339314_9	PF07463	N/A	N/A	NUMOD4 motif	NUMOD4
Pfam	UHGV-0339314_9	PF13392	N/A	N/A	HNH endonuclease	HNH_3
structural_annotation	UHGV-0339314_9	PF07463,PF02796,TIGR04381,COG5606	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0339314_11	PF01765	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0339314_13	PF10922,NF007780	N/A	N/A	N/A	N/A
PHROG	UHGV-0339314_14	phrog_4370	49.0	0.00000000000012	excisionase	integration and excision
UniRef90	UHGV-0339314_14	UniRef90_A0A1I3QKH2	122.0	3.11e-34	Helix-turn-helix domain-containing protein	N/A
structural_annotation	UHGV-0339314_15	PF12092	N/A	N/A	N/A	N/A
KOfam	UHGV-0339314_16	K07741	54.6	0.0000000000000034	antB; anti-repressor protein	N/A
PHROG	UHGV-0339314_16	phrog_130	152.6	2.8026e-45	anti-repressor Ant	transcription regulation
UniRef90	UHGV-0339314_16	UniRef90_UPI0010B22AEE	246.0	0	phage antirepressor KilAC domain-containing protein	N/A
eggNOG-mapper	UHGV-0339314_16	1415775.U729_2580	210.0	0	BRO family, N-terminal domain	N/A
Pfam	UHGV-0339314_16	PF02498	N/A	N/A	BRO family, N-terminal domain	Bro-N
Pfam	UHGV-0339314_16	PF03374	N/A	N/A	Phage antirepressor protein KilAC domain	ANT
COG	UHGV-0339314_16	COG3617	N/A	N/A	Prophage antirepressor	N/A
structural_annotation	UHGV-0339314_16	PF02498,PF03374,TIGR02681,COG3617	N/A	N/A	N/A	N/A
KOfam	UHGV-0339314_17	K07741	52.3	0.000000000000018	antB; anti-repressor protein	N/A
PHROG	UHGV-0339314_17	phrog_63	151.6	4.2039e-45	anti-repressor Ant	transcription regulation
UniRef90	UHGV-0339314_17	UniRef90_A0A1R5UMJ2	245.0	0	Rha family transcriptional regulator	N/A
eggNOG-mapper	UHGV-0339314_17	1280692.AUJL01000009_gene2976	148.0	1.46e-40	Phage regulatory protein Rha (Phage_pRha)	N/A
Pfam	UHGV-0339314_17	PF09669	N/A	N/A	Phage regulatory protein Rha (Phage_pRha)	Phage_pRha
Pfam	UHGV-0339314_17	PF03374	N/A	N/A	Phage antirepressor protein KilAC domain	ANT
NCBIFam	UHGV-0339314_17	TIGR02681.1	N/A	N/A	phage regulatory protein, Rha family	N/A
COG	UHGV-0339314_17	COG3561	N/A	N/A	Phage anti-repressor protein Ant	N/A
structural_annotation	UHGV-0339314_17	PF03374,PF09669,TIGR02681,COG3646	N/A	N/A	N/A	N/A
KOfam	UHGV-0339314_18	K07729	47.9	0.00000000000028	K07729; putative transcriptional regulator	N/A
PHROG	UHGV-0339314_18	phrog_3	41.1	0.000000000068	transcriptional repressor	transcription regulation
UniRef90	UHGV-0339314_18	UniRef90_A0A1C6H7R4	73.6	0.00000000000000115	Helix-turn-helix domain	N/A
eggNOG-mapper	UHGV-0339314_18	1487921.DP68_08675	58.9	0.000000000127	N/A	N/A
Pfam	UHGV-0339314_18	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
structural_annotation	UHGV-0339314_18	PF01381,NF041951,COG1476	N/A	N/A	N/A	N/A
KOfam	UHGV-0339314_19	K22299	63.1	6e-18	rghR; HTH-type transcriptional regulator, competence development regulator	N/A
PHROG	UHGV-0339314_19	phrog_8	73.6	3.5e-21	transcriptional regulator	transcription regulation
UniRef90	UHGV-0339314_19	UniRef90_UPI001A9A9916	82.8	5.73e-18	helix-turn-helix transcriptional regulator	N/A
eggNOG-mapper	UHGV-0339314_19	1449126.JQKL01000032_gene1256	69.3	0.000000000000392	Helix-turn-helix XRE-family like proteins	N/A
Pfam	UHGV-0339314_19	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
COG	UHGV-0339314_19	COG1396	N/A	N/A	Transcriptional regulator, contains XRE-family HTH domain	N/A
structural_annotation	UHGV-0339314_19	PF01381,MF_00535,NF041951,COG1476	N/A	N/A	N/A	N/A
PHROG	UHGV-0339314_21	phrog_2700	72.7	4.8e-21	N/A	unknown function
UniRef90	UHGV-0339314_21	UniRef90_UPI000CDA5767	149.0	7.76319e-43	SHOCT domain-containing protein	N/A
eggNOG-mapper	UHGV-0339314_21	1114972.AUAW01000005_gene253	114.0	6.66e-30	Short C-terminal domain	N/A
Pfam	UHGV-0339314_21	PF14472	N/A	N/A	N/A	DUF4429
Pfam	UHGV-0339314_21	PF09851	N/A	N/A	Short C-terminal domain	SHOCT
structural_annotation	UHGV-0339314_21	PF08000,COG3402	N/A	N/A	N/A	N/A
KOfam	UHGV-0339314_22	K14059	264.1	0	int; integrase	N/A
PHROG	UHGV-0339314_22	phrog_1	217.5	0	integrase	integration and excision
UniRef90	UHGV-0339314_22	UniRef90_A0A1C5Z094	726.0	0	Integrase	N/A
eggNOG-mapper	UHGV-0339314_22	272563.CD630_25190	281.0	0	Phage integrase, N-terminal SAM-like domain	N/A
Pfam	UHGV-0339314_22	PF14657	N/A	N/A	Arm DNA-binding domain	Arm-DNA-bind_4
Pfam	UHGV-0339314_22	PF14659	N/A	N/A	Phage integrase, N-terminal SAM-like domain	Phage_int_SAM_3
Pfam	UHGV-0339314_22	PF00589	N/A	N/A	Phage integrase family	Phage_integrase
COG	UHGV-0339314_22	COG0582	N/A	N/A	Integrase/recombinase, includes phage integrase	N/A
structural_annotation	UHGV-0339314_22	PF00589,PF14659,MF_02055,TIGR02224,COG4974	N/A	N/A	N/A	N/A
KOfam	UHGV-0339314_23	K01448	129.0	4.1e-38	amiABC; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]	N/A
PHROG	UHGV-0339314_23	phrog_435	114.0	1.7e-33	endolysin	lysis
UniRef90	UHGV-0339314_23	UniRef90_UPI001106ED5F	486.0	0	N-acetylmuramoyl-L-alanine amidase	N/A
eggNOG-mapper	UHGV-0339314_23	445973.CLOBAR_01731	431.0	0	Ami_3	N/A
Pfam	UHGV-0339314_23	PF01520	N/A	N/A	N-acetylmuramoyl-L-alanine amidase	Amidase_3
Pfam	UHGV-0339314_23	PF19087	N/A	N/A	N/A	DUF5776
COG	UHGV-0339314_23	COG0860	N/A	N/A	N-acetylmuramoyl-L-alanine amidase	N/A
structural_annotation	UHGV-0339314_23	PF01520,PF19087,TIGR02883,COG0860,COG4991	N/A	N/A	N/A	N/A
UniRef90	UHGV-0339314_24	UniRef90_UPI000983D253	61.2	0.0000000000611	phage holin	N/A
eggNOG-mapper	UHGV-0339314_24	272626.lin1702	49.7	0.000000474	Bacteriophage holin	N/A
Pfam	UHGV-0339314_24	PF04531	N/A	N/A	Bacteriophage holin	Phage_holin_1
COG	UHGV-0339314_24	COG5546	N/A	N/A	N/A	N/A
PHROG	UHGV-0339314_25	phrog_1193	64.3	1.5e-18	hemolysin	other
UniRef90	UHGV-0339314_25	UniRef90_UPI0018AB0AA6	65.1	0.00000000000309	hemolysin XhlA family protein	N/A
Pfam	UHGV-0339314_25	PF10779	N/A	N/A	Haemolysin XhlA	XhlA
KOfam	UHGV-0339314_26	K16559	56.2	3.1e-16	exoK; endo-1,3-1,4-beta-glycanase ExoK [EC:3.2.1.-]	N/A
PHROG	UHGV-0339314_26	phrog_215	61.4	1.6e-26	structural protein with Ig domain	head and packaging
eggNOG-mapper	UHGV-0339314_26	86416.Clopa_0354	201.0	0	family 16	N/A
Pfam	UHGV-0339314_26	PF10651	N/A	N/A	BppU N-terminal domain	BppU_N
Pfam	UHGV-0339314_26	PF00722	N/A	N/A	Glycosyl hydrolases family 16	Glyco_hydro_16
Pfam	UHGV-0339314_26	PF02368	N/A	N/A	Bacterial Ig-like domain (group 2)	Big_2
COG	UHGV-0339314_26	COG2273	N/A	N/A	Beta-glucanase, GH16 family	N/A
structural_annotation	UHGV-0339314_26	PF03935,PF02368,PF10651,PF18998,PF21461,MF_04116,NF041449,NF007636,COG2273,COG3291,COG2372	N/A	N/A	N/A	N/A
KOfam	UHGV-0339314_27	K11062	63.0	1.5e-18	entD; probable enterotoxin D	N/A
PHROG	UHGV-0339314_27	phrog_7043	397.4	0	tail protein	tail
UniRef90	UHGV-0339314_27	UniRef90_UPI0011CA3AC4	1515.0	0	SH3 domain-containing protein	N/A
eggNOG-mapper	UHGV-0339314_27	1292035.H476_1004	468.0	0	Prophage endopeptidase tail	N/A
Pfam	UHGV-0339314_27	PF06605	N/A	N/A	Prophage endopeptidase tail	Prophage_tail
Pfam	UHGV-0339314_27	PF08239	N/A	N/A	Bacterial SH3 domain	SH3_3
NCBIFam	UHGV-0339314_27	TIGR01665.1	N/A	N/A	phage tail spike protein	N/A
COG	UHGV-0339314_27	COG4926	N/A	N/A	Phage-related protein	N/A
structural_annotation	UHGV-0339314_27	PF14594,PF08239,PF19081,PF13229,TIGR01665,NF040678,COG4926,COG4991,COG0791	N/A	N/A	N/A	N/A
PHROG	UHGV-0339314_28	phrog_33	65.2	1.6e-18	distal tail protein Dit	tail
UniRef90	UHGV-0339314_28	UniRef90_A0A1C5VG03	214.0	0	Phage-related protein	N/A
eggNOG-mapper	UHGV-0339314_28	573061.Clocel_3532	154.0	6.86636e-44	tail component	N/A
COG	UHGV-0339314_28	COG4722	N/A	N/A	Phage-related protein YomH	N/A
structural_annotation	UHGV-0339314_28	PF20195,TIGR01633,COG4722	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0339314_29	764299.STRIC_2434	55.1	0.0000000154	Phage tail tape measure protein, TP901 family	N/A
COG	UHGV-0339314_29	COG5412	N/A	N/A	Phage-related protein	N/A
UniRef90	UHGV-0339314_30	UniRef90_UPI0019508CCD	95.9	2.48e-22	GIY-YIG nuclease family protein	N/A
eggNOG-mapper	UHGV-0339314_30	399185.A1BU52_9CAUD	56.2	0.00000017	NUMOD3 motif (2 copies)	N/A
Pfam	UHGV-0339314_30	PF01541	N/A	N/A	GIY-YIG catalytic domain	GIY-YIG
PHROG	UHGV-0339314_31	phrog_58	170.4	0	tail length tape measure protein	tail
eggNOG-mapper	UHGV-0339314_31	411460.RUMTOR_00482	63.2	0.0000000415	Phage tail tape measure protein, TP901 family	N/A
COG	UHGV-0339314_31	COG5283	N/A	N/A	Phage-related tail protein	N/A

All viral genomes

ID	Representative?	Length (bps)	% GC Content	CheckV Completeness	geNomad Score
UHGV-0339314	Yes	23,962	30	59	1