vOTU vOTU-107130

vOTU: vOTU-107130

Overview

Genome (FASTA) Annotation Track (GFF) Proteins (FASTA) Protein Annotation (TSV)

Cluster properties
vOTU ID	vOTU-107130
Number of genomes	1
Taxonomy (ICTV)	Bacteria → Firmicutes → Bacilli → Erysipelotrichales → Erysipelotrichaceae → Holdemanella
Taxonomy (UHGV)	vFAM-00006 → vSUBFAM-07072 → vGENUS-19010 → vOTU-107130
Host lineage	Bacteria → Firmicutes → Bacilli → Erysipelotrichales → Erysipelotrichaceae → Holdemanella → Holdemanella porci
Host range breadth	Species
Lifestyle	temperate (Evidence: integrase)

Representative genome
Genome ID	UHGV-0143013
Biosample ID	SAMN04480498
Genome length (bp)	29,155 bps
CheckV completeness	77.91% (Medium-quality)
CDS count	52
CDS density	93.28%
tRNA count	0
Integrase	Yes
Viral confidence	Confident

Host assignment details
Assignment method	CRISPR
CRISPR-predicted host lineage	Bacteria → Firmicutes → Bacilli → Erysipelotrichales → Erysipelotrichaceae → Holdemanella → Holdemanella porci	Total connections	102	Host agreement	72.55
PHIST-predicted host lineage	Bacteria → Firmicutes → Bacilli → Erysipelotrichales → Erysipelotrichaceae → Holdemanella	Total connections	9	Host agreement	100

Representative genome content

Select to view: Genome Viewer Functional Annotation

Genome view (completeness: 77.91)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
KOfam	UHGV-0143013_1	K14059	167.0	0	int; integrase	N/A
PHROG	UHGV-0143013_1	phrog_1	143.8	1.80067e-42	integrase	integration and excision
UniRef90	UHGV-0143013_1	UniRef90_A0A3A6DG91	189.0	0	Site-specific integrase	N/A
eggNOG-mapper	UHGV-0143013_1	1235796.C815_00955	170.0	0	DNA integration	N/A
Pfam	UHGV-0143013_1	PF00589	N/A	N/A	Phage integrase family	Phage_integrase
COG	UHGV-0143013_1	COG0582	N/A	N/A	Integrase/recombinase, includes phage integrase	N/A
structural_annotation	UHGV-0143013_1	PF00589,MF_01808,TIGR02224,COG4974	N/A	N/A	N/A	N/A
KOfam	UHGV-0143013_2	K07171	55.4	8.6e-16	mazF, ndoA, chpA; mRNA interferase MazF [EC:3.1.-.-]	N/A
PHROG	UHGV-0143013_2	phrog_1412	141.4	7.49975e-42	antitoxin mazE-like	moron, auxiliary metabolic gene and host takeover
UniRef90	UHGV-0143013_2	UniRef90_A0A395W7P4	271.0	0	Type II toxin-antitoxin system PemK/MazF family toxin	N/A
eggNOG-mapper	UHGV-0143013_2	1095737.HMPREF1110_1835	82.0	2.52e-16	PemK-like, MazF-like toxin of type II toxin-antitoxin system	N/A
Pfam	UHGV-0143013_2	PF02452	N/A	N/A	PemK-like, MazF-like toxin of type II toxin-antitoxin system	PemK_toxin
COG	UHGV-0143013_2	COG2337	N/A	N/A	mRNA-degrading endonuclease MazF, toxin component of the MazEF toxin-antitoxin module	N/A
structural_annotation	UHGV-0143013_2	PF02452,NF007386,COG2337	N/A	N/A	N/A	N/A
KOfam	UHGV-0143013_3	K22300	62.8	7.9e-18	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	N/A
PHROG	UHGV-0143013_3	phrog_8	48.6	0.00000000000019	transcriptional regulator	transcription regulation
UniRef90	UHGV-0143013_3	UniRef90_UPI001069BD25	111.0	3.34e-29	helix-turn-helix domain-containing protein	N/A
eggNOG-mapper	UHGV-0143013_3	1262914.BN533_01956	86.7	3.88e-20	Helix-turn-helix XRE-family like proteins	N/A
Pfam	UHGV-0143013_3	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
COG	UHGV-0143013_3	COG1396	N/A	N/A	Transcriptional regulator, contains XRE-family HTH domain	N/A
structural_annotation	UHGV-0143013_3	PF01381,MF_00535,NF041951,COG1396	N/A	N/A	N/A	N/A
UniRef90	UHGV-0143013_4	UniRef90_UPI00106C5922	71.2	0.00000000000000672	helix-turn-helix domain-containing protein	N/A
eggNOG-mapper	UHGV-0143013_4	1262914.BN533_01955	46.6	0.00000607	N/A	N/A
structural_annotation	UHGV-0143013_4	PF05339,NF041951,COG1396	N/A	N/A	N/A	N/A
PHROG	UHGV-0143013_7	phrog_14657	42.2	0.000000000012	N/A	unknown function
UniRef90	UHGV-0143013_7	UniRef90_A0A371AR06	53.1	0.000000412	N/A	N/A
eggNOG-mapper	UHGV-0143013_7	693746.OBV_34200	53.5	0.0000000601	N/A	N/A
Pfam	UHGV-0143013_7	PF13780	N/A	N/A	N/A	DUF4176
COG	UHGV-0143013_7	COG4495	N/A	N/A	N/A	N/A
PHROG	UHGV-0143013_10	phrog_428	118.8	7e-35	replication initiation protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0143013_10	UniRef90_UPI001D14D4CB	360.0	0	conserved phage C-terminal domain-containing protein	N/A
eggNOG-mapper	UHGV-0143013_10	428127.EUBDOL_01512	116.0	1.68e-28	DnaD domain protein	N/A
Pfam	UHGV-0143013_10	PF09524	N/A	N/A	Conserved phage C-terminus (Phg_2220_C)	Phg_2220_C
NCBIFam	UHGV-0143013_10	TIGR02220.1	N/A	N/A	phage conserved hypothetical protein, C-terminal domain	N/A
COG	UHGV-0143013_10	COG3935	N/A	N/A	DNA replication protein DnaD	N/A
structural_annotation	UHGV-0143013_10	PF09524,PF07106,MF_01177,TIGR02220,TIGR01610,COG0640	N/A	N/A	N/A	N/A
PHROG	UHGV-0143013_11	phrog_643	49.9	0.000000000000057	transcriptional regulator	transcription regulation
UniRef90	UHGV-0143013_11	UniRef90_UPI001D14AAA4	180.0	0	N/A	N/A
PHROG	UHGV-0143013_12	phrog_750	58.1	1.5e-16	N/A	unknown function
eggNOG-mapper	UHGV-0143013_12	97139.C824_00051	78.6	4.4e-18	N/A	N/A
KOfam	UHGV-0143013_13	K02338	258.7	0	dnaN; DNA polymerase III subunit beta [EC:2.7.7.7]	N/A
PHROG	UHGV-0143013_13	phrog_947	200.4	0	DNA polymerase processivity factor	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0143013_13	UniRef90_UPI001D13CF1D	540.0	0	DNA polymerase III subunit beta	N/A
eggNOG-mapper	UHGV-0143013_13	1232449.BAHV02000002_gene41	182.0	0	Confers DNA tethering and processivity to DNA polymerases and other proteins. Acts as a clamp, forming a ring around DNA (a reaction catalyzed by the clamp-loading complex) which diffuses in an ATP-independent manner freely and bidirectionally along dsDNA. Initially characterized for its ability to contact the catalytic subunit of DNA polymerase III (Pol III), a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria	N/A
Pfam	UHGV-0143013_13	PF00712	N/A	N/A	DNA polymerase III beta subunit, N-terminal domain	DNA_pol3_beta
Pfam	UHGV-0143013_13	PF02767	N/A	N/A	DNA polymerase III beta subunit, central domain	DNA_pol3_beta_2
Pfam	UHGV-0143013_13	PF02768	N/A	N/A	DNA polymerase III beta subunit, C-terminal domain	DNA_pol3_beta_3
NCBIFam	UHGV-0143013_13	TIGR00663.1	N/A	N/A	DNA polymerase III subunit beta	N/A
COG	UHGV-0143013_13	COG0592	N/A	N/A	DNA polymerase III sliding clamp (beta) subunit, PCNA homolog	N/A
structural_annotation	UHGV-0143013_13	PF02768,PF00712,PF02767,MF_00317,TIGR00663,COG0592	N/A	N/A	N/A	N/A
PHROG	UHGV-0143013_14	phrog_7445	63.4	4.2e-18	N/A	unknown function
UniRef90	UHGV-0143013_14	UniRef90_UPI001D142670	149.0	4.48416e-44	PcfK-like family protein	N/A
eggNOG-mapper	UHGV-0143013_14	1232449.BAHV02000018_gene1541	82.8	1.64e-18	PcfK-like protein	N/A
Pfam	UHGV-0143013_14	PF14058	N/A	N/A	PcfK-like protein	PcfK
structural_annotation	UHGV-0143013_14	PF14058	N/A	N/A	N/A	N/A
PHROG	UHGV-0143013_15	phrog_8470	128.0	2.29999e-40	N/A	unknown function
UniRef90	UHGV-0143013_15	UniRef90_UPI001D1558B6	677.0	0	PcfJ domain-containing protein	N/A
eggNOG-mapper	UHGV-0143013_15	1232449.BAHV02000018_gene1540	154.0	3.39e-39	PcfJ-like protein	N/A
Pfam	UHGV-0143013_15	PF14284	N/A	N/A	PcfJ-like protein	PcfJ
structural_annotation	UHGV-0143013_15	PF14284,NF008072	N/A	N/A	N/A	N/A
KOfam	UHGV-0143013_17	K04763	154.8	1.4013e-45	xerD; integrase/recombinase XerD	N/A
PHROG	UHGV-0143013_17	phrog_1	129.0	4.7e-38	integrase	integration and excision
UniRef90	UHGV-0143013_17	UniRef90_UPI001D156F0D	480.0	0	tyrosine-type recombinase/integrase	N/A
eggNOG-mapper	UHGV-0143013_17	908340.HMPREF9406_2589	224.0	0	Belongs to the 'phage' integrase family	N/A
Pfam	UHGV-0143013_17	PF00589	N/A	N/A	Phage integrase family	Phage_integrase
COG	UHGV-0143013_17	COG4974	N/A	N/A	Site-specific recombinase XerD	N/A
structural_annotation	UHGV-0143013_17	PF00589,PF13495,MF_02055,NF040815,COG4974	N/A	N/A	N/A	N/A
PHROG	UHGV-0143013_22	phrog_173	85.2	9.1e-25	nucleoside triphosphate pyrophosphohydrolase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0143013_22	UniRef90_UPI001C25836D	207.0	0	dUTPase	N/A
eggNOG-mapper	UHGV-0143013_22	218284.CCDN010000001_gene545	70.1	0.000000000000848	dUTPase	N/A
Pfam	UHGV-0143013_22	PF08761	N/A	N/A	dUTPase	dUTPase_2
COG	UHGV-0143013_22	COG4508	N/A	N/A	Dimeric dUTPase, all-alpha-NTP-PPase (MazG) superfamily	N/A
structural_annotation	UHGV-0143013_22	PF08761,COG4508	N/A	N/A	N/A	N/A
PHROG	UHGV-0143013_25	phrog_1374	42.2	0.0000000000099	N/A	unknown function
UniRef90	UHGV-0143013_25	UniRef90_UPI001D062CD1	50.8	0.000000323	transmembrane Fragile-X-F protein	N/A
eggNOG-mapper	UHGV-0143013_25	1225795.K4I4H9_9CAUD	47.8	0.0000008	N/A	N/A
structural_annotation	UHGV-0143013_26	PF17399	N/A	N/A	N/A	N/A
UniRef90	UHGV-0143013_28	UniRef90_A0A395WBY6	201.0	0	N/A	N/A
Pfam	UHGV-0143013_28	PF04448	N/A	N/A	N/A	DUF551
KOfam	UHGV-0143013_32	K03111	132.2	6.2e-39	ssb; single-strand DNA-binding protein	N/A
PHROG	UHGV-0143013_32	phrog_44	140.2	1.29998e-41	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0143013_32	UniRef90_UPI001D13B790	218.0	0	single-stranded DNA-binding protein	N/A
eggNOG-mapper	UHGV-0143013_32	518637.EUBIFOR_00985	164.0	0	Single-stranded DNA-binding protein	N/A
Pfam	UHGV-0143013_32	PF00436	N/A	N/A	Single-strand binding protein family	SSB
NCBIFam	UHGV-0143013_32	TIGR00621.2	N/A	N/A	single-stranded DNA-binding protein	N/A
COG	UHGV-0143013_32	COG0629	N/A	N/A	Single-stranded DNA-binding protein	N/A
HAMAP	UHGV-0143013_32	MF_00984	N/A	N/A	Single-stranded DNA-binding protein	N/A
structural_annotation	UHGV-0143013_32	PF00436,MF_00984,NF005241,COG0629	N/A	N/A	N/A	N/A
PHROG	UHGV-0143013_33	phrog_1689	66.8	5.3e-19	nucleotide kinase	other
UniRef90	UHGV-0143013_33	UniRef90_UPI001D150D86	149.0	2.8026e-45	N/A	N/A
eggNOG-mapper	UHGV-0143013_33	411473.RUMCAL_00920	96.7	4.66e-25	N/A	N/A
Pfam	UHGV-0143013_33	PF11753	N/A	N/A	N/A	DUF3310
structural_annotation	UHGV-0143013_33	PF11753	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0143013_35	TIGR01637	N/A	N/A	N/A	N/A
PHROG	UHGV-0143013_36	phrog_119	73.3	3.7e-21	HNH endonuclease	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0143013_36	UniRef90_A0A7X2P899	132.0	2.26e-37	HNH endonuclease	N/A
eggNOG-mapper	UHGV-0143013_36	86416.Clopa_0335	92.4	1.24e-22	HNH nucleases	N/A
Pfam	UHGV-0143013_36	PF01844	N/A	N/A	HNH endonuclease	HNH
COG	UHGV-0143013_36	COG1403	N/A	N/A	5-methylcytosine-specific restriction endonuclease McrA	N/A
PHROG	UHGV-0143013_37	phrog_5110	93.0	2.1e-27	terminase small subunit	head and packaging
UniRef90	UHGV-0143013_37	UniRef90_A0A3E3EG90	99.4	8.08e-25	RNA polymerase subunit sigma-70	N/A
eggNOG-mapper	UHGV-0143013_37	926561.KB900622_gene649	68.2	0.000000000000198	N/A	N/A
Pfam	UHGV-0143013_37	PF05119	N/A	N/A	Phage terminase, small subunit	Terminase_4
structural_annotation	UHGV-0143013_37	PF05119,TIGR01558,COG3747	N/A	N/A	N/A	N/A
PHROG	UHGV-0143013_38	phrog_9	251.5	0	terminase large subunit	head and packaging
UniRef90	UHGV-0143013_38	UniRef90_A0A3E3EH16	695.0	0	Terminase	N/A
eggNOG-mapper	UHGV-0143013_38	610130.Closa_0741	585.0	0	Phage Terminase	N/A
Pfam	UHGV-0143013_38	PF03354	N/A	N/A	Terminase large subunit, ATPase domain	TerL_ATPase
Pfam	UHGV-0143013_38	PF20441	N/A	N/A	Terminase large subunit, endonuclease domain	TerL_nuclease
COG	UHGV-0143013_38	COG4626	N/A	N/A	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	N/A
structural_annotation	UHGV-0143013_38	PF20441,PF03354,MF_04146,TIGR01547,COG4626	N/A	N/A	N/A	N/A
PHROG	UHGV-0143013_39	phrog_12	116.3	1.9e-34	portal protein	head and packaging
UniRef90	UHGV-0143013_39	UniRef90_A0A3E3EI59	440.0	0	Phage portal protein	N/A
eggNOG-mapper	UHGV-0143013_39	349161.Dred_2606	318.0	0	Phage portal protein, HK97 family	N/A
Pfam	UHGV-0143013_39	PF04860	N/A	N/A	Phage portal protein	Phage_portal
NCBIFam	UHGV-0143013_39	TIGR01537.1	N/A	N/A	phage portal protein	N/A
COG	UHGV-0143013_39	COG4695	N/A	N/A	Phage portal protein BeeE	N/A
structural_annotation	UHGV-0143013_39	PF04860,MF_04135,TIGR01537,COG4695	N/A	N/A	N/A	N/A
KOfam	UHGV-0143013_40	K01358	124.7	1.1e-36	clpP, CLPP; ATP-dependent Clp protease, protease subunit [EC:3.4.21.92]	N/A
PHROG	UHGV-0143013_40	phrog_94	225.0	0	head maturation protease	head and packaging
UniRef90	UHGV-0143013_40	UniRef90_UPI001C25D27E	335.0	0	Clp protease ClpP	N/A
eggNOG-mapper	UHGV-0143013_40	1295642.H839_15963	167.0	0	Serine dehydrogenase proteinase	N/A
Pfam	UHGV-0143013_40	PF00574	N/A	N/A	Clp protease	CLP_protease
COG	UHGV-0143013_40	COG0740	N/A	N/A	ATP-dependent protease ClpP, protease subunit	N/A
structural_annotation	UHGV-0143013_40	PF00574,MF_00444,TIGR00493,COG0740	N/A	N/A	N/A	N/A
PHROG	UHGV-0143013_41	phrog_10	124.3	1.2e-36	major head protein	head and packaging
UniRef90	UHGV-0143013_41	UniRef90_A0A3E3EGM4	425.0	0	Phage major capsid protein	N/A
eggNOG-mapper	UHGV-0143013_41	349161.Dred_2604	358.0	0	Phage capsid family	N/A
Pfam	UHGV-0143013_41	PF05065	N/A	N/A	Phage capsid family	Phage_capsid
NCBIFam	UHGV-0143013_41	TIGR01554.2	N/A	N/A	phage major capsid protein	N/A
COG	UHGV-0143013_41	COG4653	N/A	N/A	Predicted phage phi-C31 gp36 major capsid-like protein	N/A
structural_annotation	UHGV-0143013_41	PF05065,MF_04119,TIGR01554,COG4653	N/A	N/A	N/A	N/A
PHROG	UHGV-0143013_42	phrog_749	59.6	4.8e-17	N/A	unknown function
eggNOG-mapper	UHGV-0143013_42	1415774.U728_1251	52.8	0.00000022	N/A	N/A
eggNOG-mapper	UHGV-0143013_43	1235792.C808_00088	62.4	0.000000000101	N/A	N/A
structural_annotation	UHGV-0143013_43	PF16467,MF_01457,TIGR01563,COG5614	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0143013_44	665956.HMPREF1032_02260	60.1	0.000000000284	N/A	N/A
structural_annotation	UHGV-0143013_44	PF05657,MF_00281,COG0016	N/A	N/A	N/A	N/A
UniRef90	UHGV-0143013_45	UniRef90_UPI00135C8084	64.3	0.000000000134	HK97 gp10 family phage protein	N/A
eggNOG-mapper	UHGV-0143013_45	272623.L58927	62.0	0.00000000015	N/A	N/A
structural_annotation	UHGV-0143013_45	PF20039,TIGR01725,COG5005	N/A	N/A	N/A	N/A
PHROG	UHGV-0143013_46	phrog_88	104.0	1.4e-30	major tail protein	tail
UniRef90	UHGV-0143013_46	UniRef90_A0A395WA58	114.0	4.1e-28	Phage tail protein	N/A
eggNOG-mapper	UHGV-0143013_46	887929.HMP0721_1260	75.9	0.0000000000000174	phage major tail protein, phi13 family	N/A
NCBIFam	UHGV-0143013_46	TIGR01603.1	N/A	N/A	major tail protein	N/A
structural_annotation	UHGV-0143013_46	PF06488,TIGR01603,COG3498	N/A	N/A	N/A	N/A
PHROG	UHGV-0143013_47	phrog_709	73.6	1.9e-22	N/A	unknown function
UniRef90	UHGV-0143013_47	UniRef90_J3WZU1	67.0	0.00000000000682	Prophage protein 40	N/A
eggNOG-mapper	UHGV-0143013_47	198094.BA_3777	66.2	0.00000000000245	N/A	N/A
structural_annotation	UHGV-0143013_47	PF19591	N/A	N/A	N/A	N/A
PHROG	UHGV-0143013_48	phrog_1272	254.2	0	tail length tape measure protein	tail
UniRef90	UHGV-0143013_48	UniRef90_A0A174XH68	365.0	0	Phage tail tape measure protein, TP901 family	N/A
eggNOG-mapper	UHGV-0143013_48	665956.HMPREF1032_00108	353.0	0	Phage tail tape measure protein, TP901 family	N/A
Pfam	UHGV-0143013_48	PF10145	N/A	N/A	Phage-related minor tail protein	PhageMin_Tail
NCBIFam	UHGV-0143013_48	TIGR01760.1	N/A	N/A	phage tail tape measure protein	N/A
COG	UHGV-0143013_48	COG5280	N/A	N/A	Phage-related minor tail protein	N/A
structural_annotation	UHGV-0143013_48	PF10145,MF_04138,TIGR01760,COG5280	N/A	N/A	N/A	N/A
UniRef90	UHGV-0143013_49	UniRef90_A0A3E3EI44	155.0	2.4803e-43	Phage tail protein	N/A
eggNOG-mapper	UHGV-0143013_49	1232446.BAIE02000002_gene835	134.0	3.37e-36	phage tail	N/A
NCBIFam	UHGV-0143013_49	TIGR01633.1	N/A	N/A	distal tail protein Dit	N/A
COG	UHGV-0143013_49	COG4722	N/A	N/A	Phage-related protein YomH	N/A
structural_annotation	UHGV-0143013_49	PF20195,TIGR01633,COG4722	N/A	N/A	N/A	N/A
PHROG	UHGV-0143013_50	phrog_1067	320.8	0	minor head protein	head and packaging
UniRef90	UHGV-0143013_50	UniRef90_UPI001D158A25	560.0	0	phage tail protein	N/A
eggNOG-mapper	UHGV-0143013_50	1232446.BAIE02000002_gene836	454.0	0	Phage minor structural protein	N/A
Pfam	UHGV-0143013_50	PF06605	N/A	N/A	Prophage endopeptidase tail	Prophage_tail
NCBIFam	UHGV-0143013_50	TIGR01665.1	N/A	N/A	phage tail spike protein	N/A
COG	UHGV-0143013_50	COG4926	N/A	N/A	Phage-related protein	N/A
structural_annotation	UHGV-0143013_50	PF14594,TIGR01665,COG4926	N/A	N/A	N/A	N/A
PHROG	UHGV-0143013_51	phrog_8781	50.2	0.000000000000038	endolysin	lysis
UniRef90	UHGV-0143013_51	UniRef90_A0A3A6D9Z4	117.0	1.77e-29	Peptidase C51 domain-containing protein	N/A
eggNOG-mapper	UHGV-0143013_51	1235796.C815_01769	101.0	1.85e-24	hydrolase, family 25	N/A
COG	UHGV-0143013_51	COG3757	N/A	N/A	Lyzozyme M1 (1,4-beta-N-acetylmuramidase), GH25 family	N/A
structural_annotation	UHGV-0143013_51	PF05382,COG0791	N/A	N/A	N/A	N/A
PHROG	UHGV-0143013_52	phrog_24267	49.5	0.00000000000005	N/A	unknown function
eggNOG-mapper	UHGV-0143013_52	1235796.C815_00905	72.4	0.00000000000309	N/A	N/A

All viral genomes

ID	Representative?	Length (bps)	% GC Content	CheckV Completeness	geNomad Score
UHGV-0143013	Yes	29,155	36	78	1