vOTU vOTU-108158

vOTU: vOTU-108158

Overview

Genome (FASTA) Annotation Track (GFF) Proteins (FASTA) Protein Annotation (TSV)

Cluster properties
vOTU ID	vOTU-108158
Number of genomes	1
Taxonomy (ICTV)	Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes
Taxonomy (UHGV)	vFAM-00006 → vSUBFAM-02121 → vOTU-108158
Host lineage	Bacteria → Firmicutes_A → Clostridia → Oscillospirales → Oscillospiraceae → CAG-83
Host range breadth	Genus
Lifestyle	temperate (evidence: BACPHLIP)

Representative genome
Genome ID	UHGV-0017466
Biosample ID	SAMEA4766126
Genome length (bp)	34,337 bps
CheckV completeness	76.25% (Medium-quality)
CDS count	52
CDS density	93.24%
tRNA count	1
Integrase	No
Viral confidence	Confident

Host assignment details
Assignment method	CRISPR
CRISPR-predicted host lineage	Bacteria → Firmicutes_A → Clostridia → Oscillospirales → Oscillospiraceae → CAG-83	Total connections	12	Host agreement	75
PHIST-predicted host lineage		Total connections		Host agreement

Representative genome content

Select to view: Genome Viewer Functional Annotation

Genome view (completeness: 76.25)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
KOfam	UHGV-0017466_1	K07319	69.1	3.7e-20	yhdJ; adenine-specific DNA-methyltransferase [EC:2.1.1.72]	N/A
PHROG	UHGV-0017466_1	phrog_67	70.1	2.5e-20	DNA methyltransferase	other
UniRef90	UHGV-0017466_1	UniRef90_A0A2G6I066	459.0	0	Methyltransferase	N/A
eggNOG-mapper	UHGV-0017466_1	936573.HMPREF1147_1705	535.0	0	DEAD-like helicases superfamily	N/A
PADLOC	UHGV-0017466_1	MTase_II_00157	40.6	0.000000000048	Type II methyltransferase	RM
Pfam	UHGV-0017466_1	PF01555	N/A	N/A	DNA methylase	N6_N4_Mtase
COG	UHGV-0017466_1	COG0553	N/A	N/A	Superfamily II DNA or RNA helicase, SNF2 family	N/A
structural_annotation	UHGV-0017466_1	PF01555,MF_01872,NF008572,COG0863	N/A	N/A	N/A	N/A
KOfam	UHGV-0017466_2	K15773	42.9	0.0000000000094	hipB; HTH-type transcriptional regulator / antitoxin HipB	N/A
Pfam	UHGV-0017466_2	PF13560	N/A	N/A	Helix-turn-helix domain	HTH_31
structural_annotation	UHGV-0017466_2	PF13560,NF041951,COG1396	N/A	N/A	N/A	N/A
PHROG	UHGV-0017466_4	phrog_997	96.2	2.7e-28	replication terminator	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0017466_4	UniRef90_R6MCS9	101.0	1.9e-25	N/A	N/A
eggNOG-mapper	UHGV-0017466_4	1519439.JPJG01000059_gene1910	127.0	3.55e-36	N/A	N/A
PHROG	UHGV-0017466_5	phrog_1029	154.0	0	N/A	unknown function
eggNOG-mapper	UHGV-0017466_5	552398.HMPREF0866_01625	132.0	6.41e-35	N/A	N/A
structural_annotation	UHGV-0017466_5	PF10065,COG5532	N/A	N/A	N/A	N/A
UniRef90	UHGV-0017466_7	UniRef90_A0A845QLQ8	185.0	0	N/A	N/A
eggNOG-mapper	UHGV-0017466_7	33035.JPJF01000135_gene5082	122.0	8.89e-32	N/A	N/A
Pfam	UHGV-0017466_7	PF06378	N/A	N/A	N/A	DUF1071
structural_annotation	UHGV-0017466_7	PF06378,TIGR00607,COG5055	N/A	N/A	N/A	N/A
UniRef90	UHGV-0017466_8	UniRef90_B0PAM4	158.0	1.4013e-45	YqaJ domain-containing protein	N/A
structural_annotation	UHGV-0017466_8	PF09588,TIGR04328,COG5377	N/A	N/A	N/A	N/A
PHROG	UHGV-0017466_9	phrog_72	60.1	1e-17	NinB/ Orf homologous recombination mediator	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0017466_9	UniRef90_A0A8D9PDS2	198.0	0	NinB protein	N/A
eggNOG-mapper	UHGV-0017466_9	445972.ANACOL_01825	118.0	2.83e-31	N/A	N/A
Pfam	UHGV-0017466_9	PF05772	N/A	N/A	NinB protein	NinB
structural_annotation	UHGV-0017466_9	PF05772	N/A	N/A	N/A	N/A
PHROG	UHGV-0017466_10	phrog_7566	86.2	2.4e-25	N/A	unknown function
UniRef90	UHGV-0017466_10	UniRef90_A0A8D9UHC0	127.0	2.59e-36	Recombination enhancement function protein nuclease	N/A
eggNOG-mapper	UHGV-0017466_10	1007096.BAGW01000031_gene114	104.0	7.71e-28	N/A	N/A
PHROG	UHGV-0017466_11	phrog_4973	65.0	1e-18	N/A	unknown function
UniRef90	UHGV-0017466_11	UniRef90_A0A3D3Y0P8	85.1	3.27e-20	DNA-binding protein	N/A
eggNOG-mapper	UHGV-0017466_11	1072685.IX83_07155	56.2	0.000000000999	Helix-turn-helix domain	N/A
Pfam	UHGV-0017466_11	PF14090	N/A	N/A	Helix-turn-helix domain	HTH_39
structural_annotation	UHGV-0017466_11	PF14090,NF040939,COG4738	N/A	N/A	N/A	N/A
KOfam	UHGV-0017466_12	K03111	145.5	5.19882e-43	ssb; single-strand DNA-binding protein	N/A
PHROG	UHGV-0017466_12	phrog_44	143.6	1.10002e-42	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0017466_12	UniRef90_A0A352RPR0	211.0	0	Single-stranded DNA-binding protein	N/A
eggNOG-mapper	UHGV-0017466_12	1226322.HMPREF1545_04080	200.0	0	Single-strand binding protein family	N/A
Pfam	UHGV-0017466_12	PF00436	N/A	N/A	Single-strand binding protein family	SSB
NCBIFam	UHGV-0017466_12	TIGR00621.2	N/A	N/A	single-stranded DNA-binding protein	N/A
COG	UHGV-0017466_12	COG0629	N/A	N/A	Single-stranded DNA-binding protein	N/A
HAMAP	UHGV-0017466_12	MF_00984	N/A	N/A	Single-stranded DNA-binding protein	N/A
structural_annotation	UHGV-0017466_12	PF00436,MF_00984,NF005241,COG0629	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0017466_13	PF11417	N/A	N/A	N/A	N/A
PHROG	UHGV-0017466_14	phrog_4632	46.1	0.000000000000054	RusA-like Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0017466_14	UniRef90_A0A7X8IB41	120.0	1.2e-32	RusA family crossover junction endodeoxyribonuclease	N/A
eggNOG-mapper	UHGV-0017466_14	556263.FSEG_00477	65.9	0.00000000000416	N/A	N/A
structural_annotation	UHGV-0017466_14	PF19595,NF007305,COG4570	N/A	N/A	N/A	N/A
KOfam	UHGV-0017466_17	K00558	137.8	0	DNMT1, dcm; DNA (cytosine-5)-methyltransferase 1 [EC:2.1.1.37]	N/A
PHROG	UHGV-0017466_17	phrog_116	172.3	0	DNA methyltransferase	other
UniRef90	UHGV-0017466_17	UniRef90_A0A316NA61	347.0	0	DNA (cytosine-5-)-methyltransferase	N/A
eggNOG-mapper	UHGV-0017466_17	871963.Desdi_1341	332.0	0	Belongs to the class I-like SAM-binding methyltransferase superfamily. C5-methyltransferase family	N/A
PADLOC	UHGV-0017466_17	oMTase_00004	194.3	0	orphan methyltransferase	RM
Pfam	UHGV-0017466_17	PF00145	N/A	N/A	C-5 cytosine-specific DNA methylase	DNA_methylase
COG	UHGV-0017466_17	COG0270	N/A	N/A	DNA-cytosine methylase	N/A
PHROG	UHGV-0017466_18	phrog_22740	78.0	9.6e-23	N/A	unknown function
UniRef90	UHGV-0017466_18	UniRef90_A0A6N9P2A7	87.8	3.62e-20	Adenine methyltransferase	N/A
eggNOG-mapper	UHGV-0017466_18	1235793.C809_02648	84.3	2.22e-20	DNA N-6-adenine-methyltransferase	N/A
PADLOC	UHGV-0017466_18	oMTase_00015	73.8	4.5e-21	orphan methyltransferase	RM
Pfam	UHGV-0017466_18	PF05869	N/A	N/A	DNA N-6-adenine-methyltransferase (Dam)	Dam
PHROG	UHGV-0017466_19	phrog_2245	95.6	5e-28	nucleoside triphosphate pyrophosphohydrolase	other
UniRef90	UHGV-0017466_19	UniRef90_A0A1Y4MJF4	66.2	0.000000000184	N/A	N/A
eggNOG-mapper	UHGV-0017466_19	588581.Cpap_1498	90.1	3.06e-21	COG NOG14118 non supervised orthologous group	N/A
structural_annotation	UHGV-0017466_19	NF001611,COG1694	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0017466_20	COG4446	N/A	N/A	N/A	N/A
PHROG	UHGV-0017466_26	phrog_18750	41.7	0.000000000015	N/A	unknown function
eggNOG-mapper	UHGV-0017466_26	411483.FAEPRAA2165_01872	53.9	0.00000265	Cell wall hydrolase	N/A
COG	UHGV-0017466_26	COG3773	N/A	N/A	Cell wall hydrolase CwlJ, involved in spore germination	N/A
structural_annotation	UHGV-0017466_26	PF07486,TIGR02869,COG3773	N/A	N/A	N/A	N/A
UniRef90	UHGV-0017466_29	UniRef90_UPI001D07B715	128.0	4.56e-34	DNA-packaging protein	N/A
eggNOG-mapper	UHGV-0017466_29	1235793.C809_00539	57.0	0.000000163	N/A	N/A
PHROG	UHGV-0017466_31	phrog_6244	52.4	0.000000000000012	N/A	unknown function
eggNOG-mapper	UHGV-0017466_31	1354300.AUQY01000005_gene215	115.0	1.8e-32	N/A	N/A
KOfam	UHGV-0017466_33	K06400	282.4	0	spoIVCA; site-specific DNA recombinase	N/A
PHROG	UHGV-0017466_33	phrog_95	285.0	0	integrase	integration and excision
UniRef90	UHGV-0017466_33	UniRef90_A0A6G1NB68	191.0	0	Recombinase family protein	N/A
eggNOG-mapper	UHGV-0017466_33	1203606.HMPREF1526_00251	189.0	0	Resolvase, N terminal domain	N/A
Pfam	UHGV-0017466_33	PF00239	N/A	N/A	Resolvase, N terminal domain	Resolvase
Pfam	UHGV-0017466_33	PF07508	N/A	N/A	Recombinase	Recombinase
COG	UHGV-0017466_33	COG1961	N/A	N/A	Site-specific DNA recombinase SpoIVCA/DNA invertase PinE	N/A
structural_annotation	UHGV-0017466_33	PF00239,PF07508,NF041201,COG1961	N/A	N/A	N/A	N/A
PHROG	UHGV-0017466_35	phrog_3675	85.6	3.5e-25	N/A	unknown function
UniRef90	UHGV-0017466_35	UniRef90_UPI001D08FCA4	130.0	2.73e-37	YjcQ family protein	N/A
eggNOG-mapper	UHGV-0017466_35	1235802.C823_04879	117.0	9.73e-33	YjcQ protein	N/A
Pfam	UHGV-0017466_35	PF09639	N/A	N/A	YjcQ protein	YjcQ
structural_annotation	UHGV-0017466_35	PF09639,TIGR04176,COG2345	N/A	N/A	N/A	N/A
PHROG	UHGV-0017466_36	phrog_38	181.3	0	terminase large subunit	head and packaging
UniRef90	UHGV-0017466_36	UniRef90_A0A810QA10	667.0	0	Terminase	N/A
eggNOG-mapper	UHGV-0017466_36	1298920.KI911353_gene2682	498.0	0	TIGRFAM Phage	N/A
NCBIFam	UHGV-0017466_36	TIGR01630.1	N/A	N/A	phage terminase large subunit	N/A
COG	UHGV-0017466_36	COG5410	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0017466_36	PF17289,PF04466,MF_04147,NF033889,COG5410,COG5362	N/A	N/A	N/A	N/A
PHROG	UHGV-0017466_37	phrog_64	226.1	0	portal protein	head and packaging
UniRef90	UHGV-0017466_37	UniRef90_UPI001C02F349	780.0	0	phage portal protein	N/A
eggNOG-mapper	UHGV-0017466_37	1123263.AUKY01000015_gene1609	422.0	0	Phage portal protein, SPP1 Gp6-like	N/A
Pfam	UHGV-0017466_37	PF05133	N/A	N/A	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
structural_annotation	UHGV-0017466_37	PF05133,MF_04120,TIGR01538,COG5511	N/A	N/A	N/A	N/A
PHROG	UHGV-0017466_39	phrog_1328	123.5	1.2e-36	major head protein	head and packaging
UniRef90	UHGV-0017466_39	UniRef90_UPI00164DD2D5	575.0	0	N/A	N/A
eggNOG-mapper	UHGV-0017466_39	665956.HMPREF1032_03619	237.0	0	N/A	N/A
Pfam	UHGV-0017466_39	PF17236	N/A	N/A	N/A	DUF5309
structural_annotation	UHGV-0017466_39	PF17236,MF_04119,NF041162,COG4653	N/A	N/A	N/A	N/A
UniRef90	UHGV-0017466_40	UniRef90_UPI00164E20D5	157.0	0	phage head-tail connector protein	N/A
eggNOG-mapper	UHGV-0017466_40	1298920.KI911353_gene2658	56.2	0.00000000826	N/A	N/A
Pfam	UHGV-0017466_40	PF05135	N/A	N/A	Phage gp6-like head-tail connector protein	Phage_connect_1
structural_annotation	UHGV-0017466_40	TIGR01560	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0017466_41	1232453.BAIF02000058_gene1630	77.4	1.82e-16	N/A	N/A
structural_annotation	UHGV-0017466_43	PF06141,TIGR02367,COG3167	N/A	N/A	N/A	N/A
PHROG	UHGV-0017466_44	phrog_158	54.2	0.0000000000000025	major tail protein	tail
UniRef90	UHGV-0017466_44	UniRef90_A0A1C6L0H9	221.0	0	Phage tail protein	N/A
eggNOG-mapper	UHGV-0017466_44	1232453.BAIF02000058_gene1634	97.8	3.57e-24	N/A	N/A
Pfam	UHGV-0017466_44	PF08813	N/A	N/A	Phage tail tube protein, TTP	Phage_tail_3
structural_annotation	UHGV-0017466_44	PF16463,TIGR02241,COG5437	N/A	N/A	N/A	N/A
UniRef90	UHGV-0017466_45	UniRef90_UPI00164D364F	117.0	4.77e-32	N/A	N/A
eggNOG-mapper	UHGV-0017466_45	1123263.AUKY01000015_gene1618	76.6	1.19e-16	N/A	N/A
Pfam	UHGV-0017466_45	PF16478	N/A	N/A	N/A	DUF5055
structural_annotation	UHGV-0017466_45	PF16478	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0017466_46	1121333.JMLH01000047_gene1011	87.8	3.73e-20	N/A	N/A
PHROG	UHGV-0017466_47	phrog_1535	147.3	0	tail length tape measure protein	tail
UniRef90	UHGV-0017466_47	UniRef90_A0A8D9PDW4	214.0	0	Minor tail protein	N/A
eggNOG-mapper	UHGV-0017466_47	1121866.AUGK01000003_gene1437	288.0	0	phage tail tape measure protein	N/A
COG	UHGV-0017466_47	COG1280	N/A	N/A	Threonine/homoserine/homoserine lactone efflux protein	N/A
PHROG	UHGV-0017466_48	phrog_1194	72.8	3.7e-21	N/A	unknown function
UniRef90	UHGV-0017466_48	UniRef90_A0A8D9PDT1	146.0	1.15047e-42	YolD-like protein	N/A
eggNOG-mapper	UHGV-0017466_48	483218.BACPEC_01144	99.4	6.4e-25	N/A	N/A
Pfam	UHGV-0017466_48	PF20458	N/A	N/A	N/A	DUF6711
structural_annotation	UHGV-0017466_48	PF20458,TIGR01633,COG3499	N/A	N/A	N/A	N/A
PHROG	UHGV-0017466_49	phrog_6616	79.4	3.7e-25	tail protein	tail
eggNOG-mapper	UHGV-0017466_49	1507.HMPREF0262_01189	107.0	2.65e-21	Phage minor structural protein	N/A
COG	UHGV-0017466_49	COG4926	N/A	N/A	Phage-related protein	N/A
structural_annotation	UHGV-0017466_49	PF14594,NF033848,COG3500	N/A	N/A	N/A	N/A
NCBIFam	UHGV-0017466_50	TIGR02543.1	N/A	N/A	TIGR02543 family repeat protein	N/A
structural_annotation	UHGV-0017466_50	PF20377	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0017466_51	1280682.AUKA01000016_gene2141	68.9	0.00000000000778	Peptidase_C39 like family	N/A
structural_annotation	UHGV-0017466_51	PF05543,NF033920	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0017466_52	PF21683	N/A	N/A	N/A	N/A

All viral genomes

ID	Representative?	Length (bps)	% GC Content	CheckV Completeness	geNomad Score
UHGV-0017466	Yes	34,337	56	76	1