vOTU vOTU-108189

vOTU: vOTU-108189

Overview

Genome (FASTA) Annotation Track (GFF) Proteins (FASTA) Protein Annotation (TSV)

Cluster properties
vOTU ID	vOTU-108189
Number of genomes	1
Taxonomy (ICTV)	Bacteria → Firmicutes_A → Clostridia → Oscillospirales → Ruminococcaceae → Ruminococcus_C → Ruminococcus_C sp000433635
Taxonomy (UHGV)	vFAM-00006 → vSUBFAM-01631 → vGENUS-02331 → vOTU-108189
Host lineage	Bacteria → Firmicutes_A → Clostridia → Oscillospirales → Ruminococcaceae → Ruminococcus_C → Ruminococcus_C sp000433635
Host range breadth	Species
Lifestyle	temperate (Evidence: BACPHLIP)

Representative genome
Genome ID	UHGV-1997788
Biosample ID	SAMEA2580017
Genome length (bp)	28,593 bps
CheckV completeness	74.86% (Medium-quality)
CDS count	44
CDS density	89.22%
tRNA count	0
Integrase	No
Viral confidence	Confident

Host assignment details
Assignment method	CRISPR
CRISPR-predicted host lineage	Bacteria → Firmicutes_A → Clostridia → Oscillospirales → Ruminococcaceae → Ruminococcus_C → Ruminococcus_C sp000433635	Total connections	84	Host agreement	92.86
PHIST-predicted host lineage	Bacteria → Firmicutes_A → Clostridia → Oscillospirales → Ruminococcaceae → Ruminococcus_C → Ruminococcus_C sp000433635	Total connections	63	Host agreement	98.41

Representative genome content

Select to view: Genome Viewer Functional Annotation

Genome view (completeness: 74.86)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
PHROG	UHGV-1997788_1	phrog_2514	56.0	4.3e-16	DnaD-like helicase loader	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1997788_1	UniRef90_S0A2V1	76.6	0.000000000000573	DNA replication protein	N/A
eggNOG-mapper	UHGV-1997788_1	665956.HMPREF1032_02617	98.6	8.52e-22	Phage replisome organizer, N-terminal domain protein	N/A
Pfam	UHGV-1997788_1	PF13730	N/A	N/A	Helix-turn-helix domain	HTH_36
COG	UHGV-1997788_1	COG3935	N/A	N/A	DNA replication protein DnaD	N/A
structural_annotation	UHGV-1997788_1	PF10771,MF_01177,TIGR01714,COG5529	N/A	N/A	N/A	N/A
KOfam	UHGV-1997788_3	K14059	223.5	0	int; integrase	N/A
PHROG	UHGV-1997788_3	phrog_1	202.7	0	integrase	integration and excision
UniRef90	UHGV-1997788_3	UniRef90_A0A7X9GK55	474.0	0	Site-specific integrase	N/A
eggNOG-mapper	UHGV-1997788_3	1007096.BAGW01000006_gene1761	186.0	0	Phage integrase, N-terminal SAM-like domain	N/A
Pfam	UHGV-1997788_3	PF14659	N/A	N/A	Phage integrase, N-terminal SAM-like domain	Phage_int_SAM_3
Pfam	UHGV-1997788_3	PF00589	N/A	N/A	Phage integrase family	Phage_integrase
COG	UHGV-1997788_3	COG0582	N/A	N/A	Integrase/recombinase, includes phage integrase	N/A
structural_annotation	UHGV-1997788_3	PF00589,PF14659,MF_02055,TIGR02224,COG4974	N/A	N/A	N/A	N/A
PHROG	UHGV-1997788_4	phrog_23726	63.5	3.8e-35	N/A	unknown function
eggNOG-mapper	UHGV-1997788_4	428125.CLOLEP_01549	124.0	1.56e-28	cell wall binding repeat	N/A
COG	UHGV-1997788_4	COG2247	N/A	N/A	Putative cell wall-binding domain (amidase enhancer), LytB superfamily	N/A
KOfam	UHGV-1997788_5	K11641	77.6	1.5e-22	natR; two-component system, LytTR family, response regulator NatR	N/A
PHROG	UHGV-1997788_5	phrog_8810	71.8	7.9e-21	N/A	unknown function
UniRef90	UHGV-1997788_5	UniRef90_A0A352TI42	494.0	0	Stage 0 sporulation protein A homolog	N/A
eggNOG-mapper	UHGV-1997788_5	356829.BITS_0510	56.6	0.00000103	LytTr DNA-binding domain	N/A
Pfam	UHGV-1997788_5	PF00072	N/A	N/A	Response regulator receiver domain	Response_reg
Pfam	UHGV-1997788_5	PF04397	N/A	N/A	LytTr DNA-binding domain	LytTR
COG	UHGV-1997788_5	COG3279	N/A	N/A	DNA-binding response regulator, LytR/AlgR family	N/A
KOfam	UHGV-1997788_6	K22300	59.4	8.3e-17	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	N/A
PHROG	UHGV-1997788_6	phrog_8	71.8	1.2e-20	transcriptional regulator	transcription regulation
UniRef90	UHGV-1997788_6	UniRef90_R7FCD2	131.0	7.55e-36	DNA-binding helix-turn-helix protein	N/A
eggNOG-mapper	UHGV-1997788_6	697281.Mahau_0099	70.5	0.000000000000193	PFAM Helix-turn-helix	N/A
Pfam	UHGV-1997788_6	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
COG	UHGV-1997788_6	COG1396	N/A	N/A	Transcriptional regulator, contains XRE-family HTH domain	N/A
structural_annotation	UHGV-1997788_6	PF12844,MF_00535,NF041951,COG1476	N/A	N/A	N/A	N/A
PHROG	UHGV-1997788_8	phrog_585	96.6	2.4e-28	N/A	unknown function
UniRef90	UHGV-1997788_8	UniRef90_A0A5B8T2E2	93.6	5.29e-22	N/A	N/A
eggNOG-mapper	UHGV-1997788_8	279010.BL03622	88.2	1.03e-20	N/A	N/A
Pfam	UHGV-1997788_8	PF10711	N/A	N/A	N/A	DUF2513
structural_annotation	UHGV-1997788_8	PF10711,TIGR04176,COG1695	N/A	N/A	N/A	N/A
PHROG	UHGV-1997788_10	phrog_130	147.2	9.3887e-44	anti-repressor Ant	transcription regulation
UniRef90	UHGV-1997788_10	UniRef90_A0A352TI38	443.0	0	Bro-N domain-containing protein	N/A
eggNOG-mapper	UHGV-1997788_10	1121342.AUCO01000004_gene621	150.0	9.98986e-42	Phage antirepressor protein	N/A
Pfam	UHGV-1997788_10	PF02498	N/A	N/A	BRO family, N-terminal domain	Bro-N
COG	UHGV-1997788_10	COG3617	N/A	N/A	Prophage antirepressor	N/A
structural_annotation	UHGV-1997788_10	PF02498,TIGR02681,COG3617	N/A	N/A	N/A	N/A
structural_annotation	UHGV-1997788_11	PF10743	N/A	N/A	N/A	N/A
PHROG	UHGV-1997788_12	phrog_5968	166.0	0	replisome organizer	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1997788_12	UniRef90_A0A2S7ZGS0	194.0	0	Replisome organizer	N/A
eggNOG-mapper	UHGV-1997788_12	1111134.HMPREF1253_0491	153.0	7.553e-43	Phage replisome organizer N-terminal domain protein	N/A
Pfam	UHGV-1997788_12	PF09681	N/A	N/A	N-terminal phage replisome organiser (Phage_rep_org_N)	Phage_rep_org_N
NCBIFam	UHGV-1997788_12	TIGR01714.1	N/A	N/A	phage replisome organizer, putative, N-terminal region	N/A
structural_annotation	UHGV-1997788_12	PF09681,PF09524,TIGR01714,TIGR02220,COG0640	N/A	N/A	N/A	N/A
KOfam	UHGV-1997788_16	K03111	116.8	2.9e-34	ssb; single-strand DNA-binding protein	N/A
PHROG	UHGV-1997788_16	phrog_44	127.3	1.1e-37	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1997788_16	UniRef90_R5VJF6	132.0	2.75e-36	Single-stranded DNA-binding protein	N/A
eggNOG-mapper	UHGV-1997788_16	411473.RUMCAL_03263	123.0	1.01e-33	Single-stranded DNA-binding protein	N/A
Pfam	UHGV-1997788_16	PF00436	N/A	N/A	Single-strand binding protein family	SSB
NCBIFam	UHGV-1997788_16	TIGR00621.2	N/A	N/A	single-stranded DNA-binding protein	N/A
COG	UHGV-1997788_16	COG0629	N/A	N/A	Single-stranded DNA-binding protein	N/A
HAMAP	UHGV-1997788_16	MF_00984	N/A	N/A	Single-stranded DNA-binding protein	N/A
structural_annotation	UHGV-1997788_16	PF00436,MF_00984,NF005580,COG0629	N/A	N/A	N/A	N/A
structural_annotation	UHGV-1997788_18	PF10372	N/A	N/A	N/A	N/A
PHROG	UHGV-1997788_23	phrog_31911	42.8	0.0000000000086	N/A	unknown function
eggNOG-mapper	UHGV-1997788_23	1120980.JQKH01000028_gene1713	49.3	0.00000125	N/A	N/A
KOfam	UHGV-1997788_24	K03427	67.4	2.1e-19	hsdM; type I restriction enzyme M protein [EC:2.1.1.72]	N/A
PHROG	UHGV-1997788_24	phrog_5696	212.6	0	N/A	unknown function
UniRef90	UHGV-1997788_24	UniRef90_A0A8E3SKS1	239.0	0	N-6 DNA methylase	N/A
eggNOG-mapper	UHGV-1997788_24	1038869.AXAN01000028_gene1662	134.0	2.76e-35	N-6 DNA Methylase	N/A
PADLOC	UHGV-1997788_24	MTase_I_00005	41.3	0.000000000017	Type I methyltransferase	RM
Pfam	UHGV-1997788_24	PF02384	N/A	N/A	N-6 DNA Methylase	N6_Mtase
COG	UHGV-1997788_24	COG0286	N/A	N/A	Type I restriction-modification system, DNA methylase subunit	N/A
structural_annotation	UHGV-1997788_24	COG0286	N/A	N/A	N/A	N/A
structural_annotation	UHGV-1997788_25	PF14354,TIGR03655	N/A	N/A	N/A	N/A
PHROG	UHGV-1997788_27	phrog_24490	113.6	6e-34	N/A	unknown function
structural_annotation	UHGV-1997788_30	PF13613	N/A	N/A	N/A	N/A
PHROG	UHGV-1997788_31	phrog_824	133.0	1.1e-39	N/A	unknown function
UniRef90	UHGV-1997788_31	UniRef90_R7GUQ9	142.0	1.98003e-41	VRR-NUC domain-containing protein	N/A
eggNOG-mapper	UHGV-1997788_31	397288.C806_00096	119.0	5.91e-33	VRR_NUC	N/A
Pfam	UHGV-1997788_31	PF08774	N/A	N/A	VRR-NUC domain	VRR_NUC
structural_annotation	UHGV-1997788_31	PF08774	N/A	N/A	N/A	N/A
PHROG	UHGV-1997788_33	phrog_5110	76.8	2e-22	terminase small subunit	head and packaging
UniRef90	UHGV-1997788_33	UniRef90_UPI000C06AD39	67.0	0.00000000000284	P27 family phage terminase small subunit	N/A
eggNOG-mapper	UHGV-1997788_33	1235792.C808_00082	59.3	0.00000000051	N/A	N/A
Pfam	UHGV-1997788_33	PF05119	N/A	N/A	Phage terminase, small subunit	Terminase_4
structural_annotation	UHGV-1997788_33	PF05119,TIGR01558,COG3747	N/A	N/A	N/A	N/A
PHROG	UHGV-1997788_34	phrog_9	253.4	0	terminase large subunit	head and packaging
UniRef90	UHGV-1997788_34	UniRef90_A0A318XNK0	606.0	0	Phage terminase large subunit-like protein	N/A
eggNOG-mapper	UHGV-1997788_34	1211817.CCAT010000053_gene2129	559.0	0	Phage Terminase	N/A
Pfam	UHGV-1997788_34	PF03354	N/A	N/A	Terminase large subunit, ATPase domain	TerL_ATPase
Pfam	UHGV-1997788_34	PF20441	N/A	N/A	Terminase large subunit, endonuclease domain	TerL_nuclease
COG	UHGV-1997788_34	COG4626	N/A	N/A	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	N/A
structural_annotation	UHGV-1997788_34	PF20441,PF03354,MF_04146,TIGR01547,COG4626	N/A	N/A	N/A	N/A
PHROG	UHGV-1997788_35	phrog_12	74.4	7.7e-22	portal protein	head and packaging
UniRef90	UHGV-1997788_35	UniRef90_R4K0V5	154.0	1.85e-39	Phage portal protein, HK97 family	N/A
eggNOG-mapper	UHGV-1997788_35	86416.Clopa_0339	154.0	3.09999e-40	Phage portal protein	N/A
Pfam	UHGV-1997788_35	PF04860	N/A	N/A	Phage portal protein	Phage_portal
COG	UHGV-1997788_35	COG4695	N/A	N/A	Phage portal protein BeeE	N/A
structural_annotation	UHGV-1997788_35	PF04860,MF_04135,TIGR01537,COG4695	N/A	N/A	N/A	N/A
KOfam	UHGV-1997788_36	K01358	125.7	4.7e-37	clpP, CLPP; ATP-dependent Clp protease, protease subunit [EC:3.4.21.92]	N/A
PHROG	UHGV-1997788_36	phrog_94	221.5	0	head maturation protease	head and packaging
UniRef90	UHGV-1997788_36	UniRef90_A0A0G3WFI3	174.0	0	ATP-dependent Clp protease proteolytic subunit	N/A
eggNOG-mapper	UHGV-1997788_36	349161.Dred_2605	173.0	0	Belongs to the peptidase S14 family	N/A
Pfam	UHGV-1997788_36	PF00574	N/A	N/A	Clp protease	CLP_protease
COG	UHGV-1997788_36	COG0740	N/A	N/A	ATP-dependent protease ClpP, protease subunit	N/A
structural_annotation	UHGV-1997788_36	PF00574,MF_00444,NF011090,COG0740	N/A	N/A	N/A	N/A
PHROG	UHGV-1997788_37	phrog_10	114.7	9.9e-34	major head protein	head and packaging
UniRef90	UHGV-1997788_37	UniRef90_A0A7X5E289	333.0	0	Phage major capsid protein	N/A
eggNOG-mapper	UHGV-1997788_37	610130.Closa_0744	327.0	0	Phage capsid family	N/A
Pfam	UHGV-1997788_37	PF05065	N/A	N/A	Phage capsid family	Phage_capsid
NCBIFam	UHGV-1997788_37	TIGR01554.2	N/A	N/A	phage major capsid protein	N/A
COG	UHGV-1997788_37	COG4653	N/A	N/A	Predicted phage phi-C31 gp36 major capsid-like protein	N/A
structural_annotation	UHGV-1997788_37	PF05065,MF_04119,TIGR01554,COG4653	N/A	N/A	N/A	N/A
PHROG	UHGV-1997788_38	phrog_749	54.0	0.0000000000000024	N/A	unknown function
UniRef90	UHGV-1997788_38	UniRef90_A0A396SIZ8	53.1	0.000000526	Phage gp6-like head-tail connector protein	N/A
eggNOG-mapper	UHGV-1997788_38	86416.Clopa_0342	51.6	0.000000382	N/A	N/A
PHROG	UHGV-1997788_39	phrog_19734	89.5	3.3e-26	N/A	unknown function
UniRef90	UHGV-1997788_39	UniRef90_A0A0D8I708	87.0	8.97e-20	Phage head-tail joining protein	N/A
eggNOG-mapper	UHGV-1997788_39	349161.Dred_2602	88.6	3.64e-21	N/A	N/A
structural_annotation	UHGV-1997788_39	PF05521,TIGR01563,COG5614	N/A	N/A	N/A	N/A
structural_annotation	UHGV-1997788_40	PF05657,COG5003	N/A	N/A	N/A	N/A
structural_annotation	UHGV-1997788_41	TIGR01725	N/A	N/A	N/A	N/A
PHROG	UHGV-1997788_42	phrog_88	60.1	9.5e-18	major tail protein	tail
UniRef90	UHGV-1997788_42	UniRef90_A0A3Q9GIB3	59.3	0.000000293	Phage tail protein	N/A
eggNOG-mapper	UHGV-1997788_42	411459.RUMOBE_00930	85.5	7.38e-18	N/A	N/A
structural_annotation	UHGV-1997788_42	PF06488,TIGR01603,COG3498	N/A	N/A	N/A	N/A
structural_annotation	UHGV-1997788_43	PF11836	N/A	N/A	N/A	N/A
PHROG	UHGV-1997788_44	phrog_5218	240.5	0	N/A	unknown function
UniRef90	UHGV-1997788_44	UniRef90_UPI001EDCC813	352.0	0	phage tail tape measure protein	N/A
eggNOG-mapper	UHGV-1997788_44	573061.Clocel_3533	215.0	0	tail tape measure protein	N/A
Pfam	UHGV-1997788_44	PF10145	N/A	N/A	Phage-related minor tail protein	PhageMin_Tail
COG	UHGV-1997788_44	COG5280	N/A	N/A	Phage-related minor tail protein	N/A

All viral genomes

ID	Representative?	Length (bps)	% GC Content	CheckV Completeness	geNomad Score
UHGV-1997788	Yes	28,593	43	75	1