vOTU vOTU-108299

vOTU: vOTU-108299

Overview

Genome (FASTA) Annotation Track (GFF) Proteins (FASTA) Protein Annotation (TSV)

Cluster properties
vOTU ID	vOTU-108299
Number of genomes	1
Taxonomy (ICTV)
Taxonomy (UHGV)	vFAM-00003 → vSUBFAM-00930 → vOTU-108299
Host lineage	Bacteria → Firmicutes_A → Clostridia → Lachnospirales → Lachnospiraceae → AF33-28 → AF33-28 sp003477885
Host range breadth	Species
Lifestyle	temperate (Evidence: integrase)

Representative genome
Genome ID	UHGV-1923824
Biosample ID	N/A
Genome length (bp)	23,396 bps
CheckV completeness	56.43% (Medium-quality)
CDS count	30
CDS density	90.71%
tRNA count	0
Integrase	Yes
Viral confidence	Confident

Host assignment details
Assignment method	CRISPR
CRISPR-predicted host lineage	Bacteria → Firmicutes_A → Clostridia → Lachnospirales → Lachnospiraceae → AF33-28 → AF33-28 sp003477885	Total connections	5	Host agreement	100
PHIST-predicted host lineage		Total connections		Host agreement

Representative genome content

Select to view: Genome Viewer Functional Annotation

Genome view (completeness: 56.43)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
PHROG	UHGV-1923824_3	phrog_954	202.7	0	DNA methyltransferase	other
UniRef90	UHGV-1923824_3	UniRef90_A0A1C7GBP2	330.0	0	Methyltransferase	N/A
eggNOG-mapper	UHGV-1923824_3	679201.HMPREF9334_00469	212.0	0	methyltransferase	N/A
PADLOC	UHGV-1923824_3	MTase_II_00074	197.5	0	Type II methyltransferase	RM
Pfam	UHGV-1923824_3	PF08241	N/A	N/A	Methyltransferase domain	Methyltransf_11
COG	UHGV-1923824_3	COG0500	N/A	N/A	SAM-dependent methyltransferase	N/A
structural_annotation	UHGV-1923824_3	PF05148,MF_03044,NF033398,COG1041	N/A	N/A	N/A	N/A
KOfam	UHGV-1923824_4	K00571	114.0	1.6e-33	E2.1.1.72; site-specific DNA-methyltransferase (adenine-specific) [EC:2.1.1.72]	N/A
PHROG	UHGV-1923824_4	phrog_67	98.6	3.5e-29	DNA methyltransferase	other
UniRef90	UHGV-1923824_4	UniRef90_A0A6N2TY97	499.0	0	Methyltransferase	N/A
eggNOG-mapper	UHGV-1923824_4	658655.HMPREF0988_00878	493.0	0	DNA methylase	N/A
PADLOC	UHGV-1923824_4	MTase_II_00157	89.8	3.9e-26	Type II methyltransferase	RM
Pfam	UHGV-1923824_4	PF01555	N/A	N/A	DNA methylase	N6_N4_Mtase
COG	UHGV-1923824_4	COG0863	N/A	N/A	DNA modification methylase	N/A
structural_annotation	UHGV-1923824_4	PF01555,MF_01872,NF010253,COG0863	N/A	N/A	N/A	N/A
KOfam	UHGV-1923824_6	K04763	181.8	0	xerD; integrase/recombinase XerD	N/A
PHROG	UHGV-1923824_6	phrog_1	141.0	1.19993e-41	integrase	integration and excision
UniRef90	UHGV-1923824_6	UniRef90_B0NA30	402.0	0	Site-specific recombinase, phage integrase family	N/A
eggNOG-mapper	UHGV-1923824_6	411468.CLOSCI_00297	402.0	0	Belongs to the 'phage' integrase family	N/A
Pfam	UHGV-1923824_6	PF13495	N/A	N/A	Phage integrase, N-terminal SAM-like domain	Phage_int_SAM_4
Pfam	UHGV-1923824_6	PF00589	N/A	N/A	Phage integrase family	Phage_integrase
COG	UHGV-1923824_6	COG4974	N/A	N/A	Site-specific recombinase XerD	N/A
structural_annotation	UHGV-1923824_6	PF00589,PF02899,MF_01807,TIGR02224,COG4973	N/A	N/A	N/A	N/A
PHROG	UHGV-1923824_8	phrog_36	43.7	0.0000000000043	transcriptional regulator	transcription regulation
UniRef90	UHGV-1923824_8	UniRef90_A0A174KVR7	159.0	0	ECF subfamily RNA polymerase sigma-24 subunit	N/A
eggNOG-mapper	UHGV-1923824_8	411468.CLOSCI_00296	79.7	7.56e-17	N/A	N/A
structural_annotation	UHGV-1923824_8	MF_00307	N/A	N/A	N/A	N/A
KOfam	UHGV-1923824_9	K01356	52.8	0.0000000000000093	lexA; repressor LexA [EC:3.4.21.88]	N/A
PHROG	UHGV-1923824_9	phrog_3502	55.6	0.000000000000001	N/A	unknown function
UniRef90	UHGV-1923824_9	UniRef90_UPI001A937992	67.0	0.000000000000433	winged helix-turn-helix transcriptional regulator	N/A
eggNOG-mapper	UHGV-1923824_9	1111135.HMPREF1248_0636	63.9	0.0000000000243	Represses a number of genes involved in the response to DNA damage (SOS response), including recA and lexA. In the presence of single-stranded DNA, RecA interacts with LexA causing an autocatalytic cleavage which disrupts the DNA-binding part of LexA, leading to derepression of the SOS regulon and eventually DNA repair	N/A
Pfam	UHGV-1923824_9	PF01726	N/A	N/A	LexA DNA binding domain	LexA_DNA_bind
COG	UHGV-1923824_9	COG1974	N/A	N/A	SOS-response transcriptional repressor LexA (RecA-mediated autopeptidase)	N/A
structural_annotation	UHGV-1923824_9	PF01726,MF_00732,TIGR02944,COG1321	N/A	N/A	N/A	N/A
PHROG	UHGV-1923824_10	phrog_1889	177.6	0	terminase small subunit	head and packaging
UniRef90	UHGV-1923824_10	UniRef90_A0A0F0C4F1	310.0	0	Phage terminase small subunit	N/A
eggNOG-mapper	UHGV-1923824_10	1443122.Z958_p0034	104.0	1.07e-24	N/A	N/A
Pfam	UHGV-1923824_10	PF10668	N/A	N/A	Phage terminase small subunit	Phage_terminase
NCBIFam	UHGV-1923824_10	NF040601.1	N/A	N/A	phage terminase small subunit	N/A
COG	UHGV-1923824_10	COG5484	N/A	N/A	N/A	N/A
structural_annotation	UHGV-1923824_10	PF06056,NF040601,COG5484	N/A	N/A	N/A	N/A
KOfam	UHGV-1923824_11	K06909	144.2	1.10002e-42	xtmB; phage terminase large subunit	N/A
PHROG	UHGV-1923824_11	phrog_10250	225.2	0	N/A	unknown function
UniRef90	UHGV-1923824_11	UniRef90_A0A0F0C3Z2	731.0	0	Terminase-like family protein	N/A
eggNOG-mapper	UHGV-1923824_11	903814.ELI_3215	606.0	0	Phage terminase large subunit	N/A
Pfam	UHGV-1923824_11	PF03237	N/A	N/A	Terminase large subunit, T4likevirus-type, N-terminal	Terminase_6N
Pfam	UHGV-1923824_11	PF17289	N/A	N/A	Terminase RNaseH-like domain	Terminase_6C
NCBIFam	UHGV-1923824_11	TIGR01547.1	N/A	N/A	PBSX family phage terminase large subunit	N/A
COG	UHGV-1923824_11	COG1783	N/A	N/A	Phage terminase large subunit	N/A
structural_annotation	UHGV-1923824_11	PF04466,PF20454,MF_04148,TIGR01547,COG1783	N/A	N/A	N/A	N/A
PHROG	UHGV-1923824_12	phrog_64	396.1	0	portal protein	head and packaging
UniRef90	UHGV-1923824_12	UniRef90_UPI001652B712	730.0	0	phage portal protein	N/A
eggNOG-mapper	UHGV-1923824_12	742733.HMPREF9469_01826	657.0	0	Phage portal protein, SPP1 family	N/A
Pfam	UHGV-1923824_12	PF05133	N/A	N/A	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
NCBIFam	UHGV-1923824_12	TIGR01538.1	N/A	N/A	phage portal protein	N/A
structural_annotation	UHGV-1923824_12	PF05133,MF_04120,TIGR01538,COG3567	N/A	N/A	N/A	N/A
PHROG	UHGV-1923824_13	phrog_2841	392.2	0	minor head protein	head and packaging
UniRef90	UHGV-1923824_13	UniRef90_A0A2S6HSH1	760.0	0	SPP1 gp7 family putative phage head morphogenesis protein	N/A
eggNOG-mapper	UHGV-1923824_13	742733.HMPREF9469_01825	479.0	0	Phage head morphogenesis protein, SPP1 gp7 family	N/A
Pfam	UHGV-1923824_13	PF04233	N/A	N/A	Phage Mu protein F like protein	Phage_Mu_F
NCBIFam	UHGV-1923824_13	TIGR01641.1	N/A	N/A	minor capsid protein	N/A
COG	UHGV-1923824_13	COG2369	N/A	N/A	N/A	N/A
structural_annotation	UHGV-1923824_13	PF04233,TIGR01641,COG2357	N/A	N/A	N/A	N/A
PHROG	UHGV-1923824_15	phrog_172	160.2	0	head scaffolding protein	head and packaging
UniRef90	UHGV-1923824_15	UniRef90_UPI00156EF0C7	230.0	0	N/A	N/A
eggNOG-mapper	UHGV-1923824_15	742733.HMPREF9469_01824	173.0	0	N/A	N/A
Pfam	UHGV-1923824_15	PF14265	N/A	N/A	N/A	DUF4355
structural_annotation	UHGV-1923824_15	PF14265	N/A	N/A	N/A	N/A
PHROG	UHGV-1923824_16	phrog_247	279.4	0	major head protein	head and packaging
UniRef90	UHGV-1923824_16	UniRef90_UPI00156DFF0E	575.0	0	coat protein	N/A
eggNOG-mapper	UHGV-1923824_16	1304866.K413DRAFT_3038	507.0	0	N/A	N/A
Pfam	UHGV-1923824_16	PF20036	N/A	N/A	Major capsid protein 13-like	Gp13-like
structural_annotation	UHGV-1923824_16	PF20036,MF_04113,TIGR04387,COG4653	N/A	N/A	N/A	N/A
PHROG	UHGV-1923824_17	phrog_132	78.1	9e-23	head-tail adaptor	connector
UniRef90	UHGV-1923824_17	UniRef90_UPI001D06FE42	141.0	2.23003e-41	phage head-tail connector protein	N/A
eggNOG-mapper	UHGV-1923824_17	742733.HMPREF9469_01821	118.0	3.44e-33	Phage gp6-like head-tail connector protein	N/A
Pfam	UHGV-1923824_17	PF05135	N/A	N/A	Phage gp6-like head-tail connector protein	Phage_connect_1
structural_annotation	UHGV-1923824_17	PF05135,TIGR01560	N/A	N/A	N/A	N/A
PHROG	UHGV-1923824_18	phrog_2168	98.9	2.3e-29	N/A	unknown function
eggNOG-mapper	UHGV-1923824_18	742733.HMPREF9469_01820	143.0	1.46015e-42	N/A	N/A
structural_annotation	UHGV-1923824_18	PF07405,TIGR01563,COG5614	N/A	N/A	N/A	N/A
PHROG	UHGV-1923824_19	phrog_5	97.7	1.4e-28	tail completion or Neck1 protein	connector
UniRef90	UHGV-1923824_19	UniRef90_D3ATL6	245.0	0	Phage protein, HK97 gp10 family	N/A
eggNOG-mapper	UHGV-1923824_19	742733.HMPREF9469_01819	217.0	0	Bacteriophage HK97-gp10, putative tail-component	N/A
Pfam	UHGV-1923824_19	PF04883	N/A	N/A	Bacteriophage HK97-gp10, putative tail-component	HK97-gp10_like
NCBIFam	UHGV-1923824_19	TIGR01725.1	N/A	N/A	HK97-gp10 family putative phage morphogenesis protein	N/A
structural_annotation	UHGV-1923824_19	PF20039,TIGR01725,COG5005	N/A	N/A	N/A	N/A
PHROG	UHGV-1923824_20	phrog_78	61.2	1.9e-17	tail terminator	connector
eggNOG-mapper	UHGV-1923824_20	1235800.C819_00480	167.0	0	N/A	N/A
structural_annotation	UHGV-1923824_20	PF05657	N/A	N/A	N/A	N/A
PHROG	UHGV-1923824_21	phrog_158	61.3	2.2e-17	major tail protein	tail
UniRef90	UHGV-1923824_21	UniRef90_U2PUJ2	187.0	0	Major tail protein	N/A
eggNOG-mapper	UHGV-1923824_21	1294142.CINTURNW_1696	187.0	0	Phage tail tube protein, TTP	N/A
Pfam	UHGV-1923824_21	PF08813	N/A	N/A	Phage tail tube protein, TTP	Phage_tail_3
structural_annotation	UHGV-1923824_21	PF16463,TIGR02241,COG5437	N/A	N/A	N/A	N/A
PHROG	UHGV-1923824_22	phrog_183	64.0	2e-18	tail chaperone protein	tail
UniRef90	UHGV-1923824_22	UniRef90_UPI0008324CF8	149.0	1.41531e-43	N/A	N/A
eggNOG-mapper	UHGV-1923824_22	742733.HMPREF9469_01816	162.0	0	N/A	N/A
Pfam	UHGV-1923824_22	PF19591	N/A	N/A	N/A	DUF6096
structural_annotation	UHGV-1923824_22	PF19591	N/A	N/A	N/A	N/A
PHROG	UHGV-1923824_23	phrog_2066	66.4	4.3e-19	N/A	unknown function
eggNOG-mapper	UHGV-1923824_23	1280689.AUJC01000003_gene975	61.6	0.0000000000795	N/A	N/A
UniRef90	UHGV-1923824_24	UniRef90_N9XK57	63.5	0.00000000178	zinc_ribbon_2 domain-containing protein	N/A
eggNOG-mapper	UHGV-1923824_24	1280694.AUJQ01000007_gene1082	58.2	0.000000114	Trypsin-like peptidase domain	N/A
Pfam	UHGV-1923824_24	PF13248	N/A	N/A	zinc-ribbon domain	zf-ribbon_3
COG	UHGV-1923824_24	COG0265	N/A	N/A	Periplasmic serine protease, S1-C subfamily, contain C-terminal PDZ domain	N/A
PHROG	UHGV-1923824_25	phrog_1535	255.7	0	tail length tape measure protein	tail
UniRef90	UHGV-1923824_25	UniRef90_A0A174GX48	536.0	0	Phage-like protein	N/A
eggNOG-mapper	UHGV-1923824_25	742733.HMPREF9469_01814	434.0	0	tape measure	N/A
COG	UHGV-1923824_25	COG3941	N/A	N/A	Phage tail tape-measure protein, controls tail length	N/A
structural_annotation	UHGV-1923824_25	PF20155,TIGR01760,COG3941	N/A	N/A	N/A	N/A
PHROG	UHGV-1923824_26	phrog_1194	114.2	6.2e-34	N/A	unknown function
eggNOG-mapper	UHGV-1923824_26	936580.HMPREF1516_0708	83.2	5.31e-19	N/A	N/A
Pfam	UHGV-1923824_26	PF20458	N/A	N/A	N/A	DUF6711
structural_annotation	UHGV-1923824_26	PF20458,TIGR02126,COG3499	N/A	N/A	N/A	N/A
PHROG	UHGV-1923824_27	phrog_6616	560.1	0	tail protein	tail
UniRef90	UHGV-1923824_27	UniRef90_UPI00085BC306	449.0	0	tail fiber domain-containing protein	N/A
eggNOG-mapper	UHGV-1923824_27	1121866.AUGK01000003_gene1439	347.0	0	Phage minor structural protein	N/A
COG	UHGV-1923824_27	COG4926	N/A	N/A	Phage-related protein	N/A
structural_annotation	UHGV-1923824_27	PF05113,NF033848,COG3500	N/A	N/A	N/A	N/A
PHROG	UHGV-1923824_28	phrog_21765	50.8	0.000000000000019	N/A	unknown function
COG	UHGV-1923824_28	COG5164	N/A	N/A	Transcription elongation factor SPT5	N/A

All viral genomes

ID	Representative?	Length (bps)	% GC Content	CheckV Completeness	geNomad Score
UHGV-1923824	Yes	23,396	46	56	1