vOTU vOTU-109001

vOTU: vOTU-109001

Overview

Genome (FASTA) Annotation Track (GFF) Proteins (FASTA) Protein Annotation (TSV)

Cluster properties
vOTU ID	vOTU-109001
Number of genomes	1
Taxonomy (ICTV)	Bacteria → Firmicutes_C → Negativicutes → Acidaminococcales → Acidaminococcaceae → Phascolarctobacterium_A → Phascolarctobacterium_A succinatutens
Taxonomy (UHGV)	vFAM-00008 → vSUBFAM-00244 → vGENUS-00145 → vOTU-109001
Host lineage	Bacteria → Firmicutes_C → Negativicutes → Acidaminococcales → Acidaminococcaceae → Phascolarctobacterium_A
Host range breadth	Genus
Lifestyle	temperate (Evidence: BACPHLIP)

Representative genome
Genome ID	UHGV-1533003
Biosample ID	SAMEA3541532
Genome length (bp)	33,562 bps
CheckV completeness	53.53% (Medium-quality)
CDS count	71
CDS density	92.05%
tRNA count	0
Integrase	No
Viral confidence	Confident

Host assignment details
Assignment method	CRISPR
CRISPR-predicted host lineage	Bacteria → Firmicutes_C → Negativicutes → Acidaminococcales → Acidaminococcaceae → Phascolarctobacterium_A	Total connections	127	Host agreement	100
PHIST-predicted host lineage	Bacteria → Firmicutes_C → Negativicutes → Acidaminococcales → Acidaminococcaceae → Phascolarctobacterium_A → Phascolarctobacterium_A succinatutens	Total connections	19	Host agreement	84.21

Representative genome content

Select to view: Genome Viewer Functional Annotation

Genome view (completeness: 53.53)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
KOfam	UHGV-1533003_1	K09961	317.3	0	N/A	N/A
PHROG	UHGV-1533003_1	phrog_146	320.4	0	portal protein	head and packaging
UniRef90	UHGV-1533003_1	UniRef90_UPI0012DECB78	266.0	0	N/A	N/A
eggNOG-mapper	UHGV-1533003_1	1120985.AUMI01000019_gene2237	270.0	0	N/A	N/A
Pfam	UHGV-1533003_1	PF06381	N/A	N/A	Anti-CBASS protein Acb1-like	Abc1-like
COG	UHGV-1533003_1	COG3567	N/A	N/A	N/A	N/A
structural_annotation	UHGV-1533003_1	PF06381,MF_04135,TIGR01555,COG3567	N/A	N/A	N/A	N/A
PHROG	UHGV-1533003_2	phrog_979	454.1	0	terminase large subunit	head and packaging
UniRef90	UHGV-1533003_2	UniRef90_UPI001D00751E	692.0	0	phage terminase large subunit	N/A
eggNOG-mapper	UHGV-1533003_2	1200557.JHWV01000006_gene1732	511.0	0	Terminase RNaseH-like domain	N/A
Pfam	UHGV-1533003_2	PF03237	N/A	N/A	Terminase large subunit, T4likevirus-type, N-terminal	Terminase_6N
Pfam	UHGV-1533003_2	PF17289	N/A	N/A	Terminase RNaseH-like domain	Terminase_6C
NCBIFam	UHGV-1533003_2	TIGR01630.1	N/A	N/A	phage terminase large subunit	N/A
COG	UHGV-1533003_2	COG5362	N/A	N/A	Phage terminase large subunit	N/A
structural_annotation	UHGV-1533003_2	PF04466,PF17289,MF_04145,TIGR01547,COG5323	N/A	N/A	N/A	N/A
PHROG	UHGV-1533003_3	phrog_16866	58.9	3.2e-32	N/A	unknown function
eggNOG-mapper	UHGV-1533003_3	927704.SELR_18260	105.0	1.12e-23	atpase related to the helicase subunit of the holliday junction resolvase	N/A
COG	UHGV-1533003_3	COG2256	N/A	N/A	Replication-associated recombination protein RarA (DNA-dependent ATPase)	N/A
PHROG	UHGV-1533003_4	phrog_842	54.3	0.0000000000000021	beta-glucosyl-HMC-alpha-glucosyltransferase	other
structural_annotation	UHGV-1533003_4	PF20691,MF_00316,TIGR04017,COG1216	N/A	N/A	N/A	N/A
UniRef90	UHGV-1533003_5	UniRef90_A0A1V5XFN8	185.0	0	WbqC-like protein family protein	N/A
eggNOG-mapper	UHGV-1533003_5	1449050.JNLE01000003_gene3165	158.0	2.8026e-45	WbqC-like protein family	N/A
Pfam	UHGV-1533003_5	PF08889	N/A	N/A	WbqC-like protein family	WbqC
COG	UHGV-1533003_5	COG0224	N/A	N/A	FoF1-type ATP synthase, gamma subunit	N/A
structural_annotation	UHGV-1533003_5	PF08889	N/A	N/A	N/A	N/A
PHROG	UHGV-1533003_6	phrog_620	60.7	3.3e-17	ParB-like partition protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1533003_6	UniRef90_UPI001C018E19	196.0	0	ParB N-terminal domain-containing protein	N/A
eggNOG-mapper	UHGV-1533003_6	761193.Runsl_0328	67.4	0.0000000000439	DNA binding	N/A
COG	UHGV-1533003_6	COG1475	N/A	N/A	Chromosome segregation protein Spo0J, contains ParB-like nuclease domain	N/A
structural_annotation	UHGV-1533003_6	PF02195,MF_02015,TIGR03764	N/A	N/A	N/A	N/A
KOfam	UHGV-1533003_7	K01463	145.7	3.40516e-43	bshB1; N-acetylglucosamine malate deacetylase 1 [EC:3.5.1.-]	N/A
PHROG	UHGV-1533003_7	phrog_11796	109.5	3.9e-32	N/A	unknown function
UniRef90	UHGV-1533003_7	UniRef90_C7X6G4	270.0	0	N-acetylglucosaminylphosphatidylinositol deacetylase	N/A
eggNOG-mapper	UHGV-1533003_7	1196028.ALEF01000042_gene756	257.0	0	GlcNAc-PI de-N-acetylase	N/A
Pfam	UHGV-1533003_7	PF02585	N/A	N/A	GlcNAc-PI de-N-acetylase	PIG-L
COG	UHGV-1533003_7	COG2120	N/A	N/A	N-acetylglucosaminyl deacetylase, LmbE family	N/A
structural_annotation	UHGV-1533003_7	PF02585,MF_01696,TIGR04001,COG2120	N/A	N/A	N/A	N/A
UniRef90	UHGV-1533003_10	UniRef90_A0A415ZLW7	70.1	0.000000000000154	DNA-binding response regulator	N/A
eggNOG-mapper	UHGV-1533003_10	500632.CLONEX_02025	64.7	0.0000000000308	N/A	N/A
Pfam	UHGV-1533003_10	PF13518	N/A	N/A	Helix-turn-helix domain	HTH_28
Pfam	UHGV-1533003_10	PF13384	N/A	N/A	Homeodomain-like domain	HTH_23
structural_annotation	UHGV-1533003_10	PF00196,NF040595,COG2771	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-1533003_11	1064535.MELS_1123	84.7	4.86e-18	N/A	N/A
Pfam	UHGV-1533003_14	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
eggNOG-mapper	UHGV-1533003_15	397291.C804_01048	101.0	7.24e-24	N/A	N/A
UniRef90	UHGV-1533003_16	UniRef90_A0A1Y4JEZ6	71.2	0.00000000000683	N/A	N/A
eggNOG-mapper	UHGV-1533003_16	1002367.HMPREF0673_03040	58.5	0.0000000531	N/A	N/A
KOfam	UHGV-1533003_18	K02990	94.8	1e-27	RP-S6, MRPS6, rpsF; small subunit ribosomal protein S6	N/A
UniRef90	UHGV-1533003_18	UniRef90_R6WXS0	120.0	1.65e-33	30S ribosomal protein S6	N/A
eggNOG-mapper	UHGV-1533003_18	626939.HMPREF9443_01149	120.0	2.76e-34	Binds together with S18 to 16S ribosomal RNA	N/A
Pfam	UHGV-1533003_18	PF01250	N/A	N/A	Ribosomal protein S6	Ribosomal_S6
NCBIFam	UHGV-1533003_18	TIGR00166.1	N/A	N/A	30S ribosomal protein S6	N/A
COG	UHGV-1533003_18	COG0360	N/A	N/A	Ribosomal protein S6	N/A
HAMAP	UHGV-1533003_18	MF_00360	N/A	N/A	Small ribosomal subunit protein bS6 [rpsF]	N/A
structural_annotation	UHGV-1533003_18	PF01250,MF_00360,TIGR00166,COG0360	N/A	N/A	N/A	N/A
KOfam	UHGV-1533003_19	K03630	187.6	0	radC; DNA repair protein RadC	N/A
PHROG	UHGV-1533003_19	phrog_10276	128.9	2.2e-38	DNA repair protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1533003_19	UniRef90_A0A1Q6R9Z9	151.0	1.86933e-42	MPN domain-containing protein	N/A
eggNOG-mapper	UHGV-1533003_19	626939.HMPREF9443_00953	153.0	1.17709e-43	Belongs to the UPF0758 family	N/A
Pfam	UHGV-1533003_19	PF04002	N/A	N/A	RadC-like JAB domain	RadC
NCBIFam	UHGV-1533003_19	TIGR00608.1	N/A	N/A	DNA repair protein RadC	N/A
COG	UHGV-1533003_19	COG2003	N/A	N/A	DNA repair protein RadC, contains a helix-hairpin-helix DNA-binding motif	N/A
structural_annotation	UHGV-1533003_19	PF04002,MF_00018,NF000642,COG2003	N/A	N/A	N/A	N/A
UniRef90	UHGV-1533003_21	UniRef90_W1I488	90.9	1.47e-20	Uncultured bacterium extrachromosomal DNA RGI00017	N/A
eggNOG-mapper	UHGV-1533003_21	272562.CA_C1147	103.0	2.44e-26	N/A	N/A
structural_annotation	UHGV-1533003_24	PF05546	N/A	N/A	N/A	N/A
PHROG	UHGV-1533003_27	phrog_1558	120.4	9.9e-36	N/A	unknown function
UniRef90	UHGV-1533003_27	UniRef90_UPI00143C6E81	94.0	2.12e-20	HTH domain-containing protein	N/A
eggNOG-mapper	UHGV-1533003_27	397291.C804_05808	84.7	1.97e-17	N/A	N/A
structural_annotation	UHGV-1533003_27	PF06530,TIGR01636,COG2739	N/A	N/A	N/A	N/A
PHROG	UHGV-1533003_28	phrog_236	99.0	8.4e-29	nucleotide kinase	other
UniRef90	UHGV-1533003_28	UniRef90_UPI001030BDA4	120.0	1.15e-33	N/A	N/A
eggNOG-mapper	UHGV-1533003_28	1173749.S4TNV2_9CAUD	124.0	9.46e-36	N/A	N/A
Pfam	UHGV-1533003_28	PF11753	N/A	N/A	N/A	DUF3310
eggNOG-mapper	UHGV-1533003_30	665956.HMPREF1032_02663	80.5	4.02e-17	N/A	N/A
KOfam	UHGV-1533003_32	K01520	106.8	2.4e-31	dut, DUT; dUTP pyrophosphatase [EC:3.6.1.23]	N/A
PHROG	UHGV-1533003_32	phrog_135	104.2	9.9e-31	dUTPase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1533003_32	UniRef90_A0A3C1INT1	230.0	0	Deoxyuridine 5'-triphosphate nucleotidohydrolase	N/A
eggNOG-mapper	UHGV-1533003_32	1410618.JNKI01000001_gene1360	128.0	3.89e-36	This enzyme is involved in nucleotide metabolism it produces dUMP, the immediate precursor of thymidine nucleotides and it decreases the intracellular concentration of dUTP so that uracil cannot be incorporated into DNA	N/A
Pfam	UHGV-1533003_32	PF00692	N/A	N/A	dUTPase	dUTPase
COG	UHGV-1533003_32	COG0756	N/A	N/A	dUTP pyrophosphatase (dUTPase)	N/A
structural_annotation	UHGV-1533003_32	PF00692,MF_00116,NF010561,COG0756	N/A	N/A	N/A	N/A
PHROG	UHGV-1533003_35	phrog_8538	49.6	0.000000000000049	N/A	unknown function
PHROG	UHGV-1533003_40	phrog_8514	41.6	0.00000000002	N/A	unknown function
eggNOG-mapper	UHGV-1533003_40	573065.Astex_0303	54.3	0.000000464	N/A	N/A
PHROG	UHGV-1533003_42	phrog_954	183.6	0	DNA methyltransferase	other
UniRef90	UHGV-1533003_42	UniRef90_A0A413WQZ9	166.0	0	Methyltransferase domain-containing protein	N/A
eggNOG-mapper	UHGV-1533003_42	796940.HMPREF9628_00165	157.0	0	methyltransferase	N/A
PADLOC	UHGV-1533003_42	MTase_II_00074	155.9	0	Type II methyltransferase	RM
COG	UHGV-1533003_42	COG0500	N/A	N/A	SAM-dependent methyltransferase	N/A
structural_annotation	UHGV-1533003_42	PF01170,MF_01057,TIGR00446,COG4123	N/A	N/A	N/A	N/A
PHROG	UHGV-1533003_44	phrog_3878	56.6	4.7e-16	N/A	unknown function
PHROG	UHGV-1533003_45	phrog_10714	85.0	6.5e-25	N/A	unknown function
structural_annotation	UHGV-1533003_45	PF21173	N/A	N/A	N/A	N/A
PHROG	UHGV-1533003_51	phrog_7839	51.6	0.000000000000014	N/A	unknown function
eggNOG-mapper	UHGV-1533003_51	1232453.BAIF02000057_gene1137	54.7	0.000000113	N/A	N/A
KOfam	UHGV-1533003_54	K03700	100.3	2.3e-29	recU; recombination protein U	N/A
PHROG	UHGV-1533003_54	phrog_843	148.0	3.36312e-44	Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1533003_54	UniRef90_A0A1Q6RQM3	343.0	0	Holliday junction resolvase RecU	N/A
eggNOG-mapper	UHGV-1533003_54	445972.ANACOL_03343	163.0	0	Endonuclease that resolves Holliday junction intermediates in genetic recombination. Cleaves mobile four-strand junctions by introducing symmetrical nicks in paired strands. Promotes annealing of linear ssDNA with homologous dsDNA. Required for DNA repair, homologous recombination and chromosome segregation	N/A
Pfam	UHGV-1533003_54	PF03838	N/A	N/A	Recombination protein U	RecU
COG	UHGV-1533003_54	COG3331	N/A	N/A	Penicillin-binding protein-related factor A, putative recombinase	N/A
structural_annotation	UHGV-1533003_54	PF03838,MF_00130,NF002581,COG3331	N/A	N/A	N/A	N/A
KOfam	UHGV-1533003_56	K03111	152.5	4.2039e-45	ssb; single-strand DNA-binding protein	N/A
PHROG	UHGV-1533003_56	phrog_44	154.6	0	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1533003_56	UniRef90_A0A1Q6RQN1	270.0	0	Single-stranded DNA-binding protein	N/A
eggNOG-mapper	UHGV-1533003_56	626939.HMPREF9443_01150	186.0	0	Plays an important role in DNA replication, recombination and repair. Binds to ssDNA and to an array of partner proteins to recruit them to their sites of action during DNA metabolism	N/A
Pfam	UHGV-1533003_56	PF00436	N/A	N/A	Single-strand binding protein family	SSB
NCBIFam	UHGV-1533003_56	TIGR00621.2	N/A	N/A	single-stranded DNA-binding protein	N/A
COG	UHGV-1533003_56	COG0629	N/A	N/A	Single-stranded DNA-binding protein	N/A
HAMAP	UHGV-1533003_56	MF_00984	N/A	N/A	Single-stranded DNA-binding protein	N/A
structural_annotation	UHGV-1533003_56	PF00436,MF_00984,NF005580,COG0629	N/A	N/A	N/A	N/A
KOfam	UHGV-1533003_58	K02315	181.4	0	dnaC; DNA replication protein DnaC	N/A
PHROG	UHGV-1533003_58	phrog_50	149.0	3.22299e-44	DnaC-like helicase loader	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1533003_58	UniRef90_A0A1Q6RQM1	523.0	0	IstB_IS21 domain-containing protein	N/A
eggNOG-mapper	UHGV-1533003_58	1408324.JNJK01000055_gene1199	202.0	0	IstB-like ATP binding protein	N/A
Pfam	UHGV-1533003_58	PF01695	N/A	N/A	IstB-like ATP binding protein	IstB_IS21
NCBIFam	UHGV-1533003_58	NF005992.0	N/A	N/A	hypothetical protein	N/A
COG	UHGV-1533003_58	COG1484	N/A	N/A	DNA replication protein DnaC	N/A
structural_annotation	UHGV-1533003_58	PF01695,MF_00377,NF005992,COG1484	N/A	N/A	N/A	N/A
PHROG	UHGV-1533003_59	phrog_4880	106.7	2.1e-31	replisome organizer	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1533003_59	UniRef90_A0A1Q6RQR2	524.0	0	Phage_rep_org_N domain-containing protein	N/A
eggNOG-mapper	UHGV-1533003_59	1178540.BA70_18625	94.4	1.33e-19	Conserved phage C-terminus (Phg_2220_C)	N/A
Pfam	UHGV-1533003_59	PF09681	N/A	N/A	N-terminal phage replisome organiser (Phage_rep_org_N)	Phage_rep_org_N
NCBIFam	UHGV-1533003_59	TIGR01714.1	N/A	N/A	phage replisome organizer, putative, N-terminal region	N/A
COG	UHGV-1533003_59	COG3935	N/A	N/A	DNA replication protein DnaD	N/A
structural_annotation	UHGV-1533003_59	PF09681,TIGR01714,TIGR01446,COG3935	N/A	N/A	N/A	N/A
PHROG	UHGV-1533003_60	phrog_7566	85.3	4.8e-25	N/A	unknown function
eggNOG-mapper	UHGV-1533003_60	1304866.K413DRAFT_1198	78.6	7.92e-18	N/A	N/A
PHROG	UHGV-1533003_61	phrog_2324	152.1	1.4013e-45	Erf-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1533003_61	UniRef90_UPI001032CF2B	150.0	4.68034e-42	ERF family protein	N/A
eggNOG-mapper	UHGV-1533003_61	1295642.H839_08084	113.0	2.38e-28	ERF superfamily	N/A
Pfam	UHGV-1533003_61	PF04404	N/A	N/A	ERF superfamily	ERF
structural_annotation	UHGV-1533003_61	PF04404,TIGR00607	N/A	N/A	N/A	N/A
PHROG	UHGV-1533003_63	phrog_989	58.8	6.5e-17	N/A	unknown function
UniRef90	UHGV-1533003_63	UniRef90_UPI001D061873	53.9	0.0000000337	helix-turn-helix domain-containing protein	N/A
PHROG	UHGV-1533003_64	phrog_6499	56.4	2.1e-16	transcriptional regulator	transcription regulation
UniRef90	UHGV-1533003_64	UniRef90_A0A0J8DAU9	70.1	0.00000000000235	Putative prophage lambdaCh01, transcriptional regulator	N/A
eggNOG-mapper	UHGV-1533003_64	632518.Calow_0810	77.4	6.28e-16	Helix-turn-helix XRE-family like proteins	N/A
COG	UHGV-1533003_64	COG1813	N/A	N/A	Archaeal ribosome-binding protein aMBF1, putative translation factor, contains Zn-ribbon and HTH domains	N/A
structural_annotation	UHGV-1533003_64	PF01381,MF_00535,TIGR03070,COG1476	N/A	N/A	N/A	N/A
Pfam	UHGV-1533003_65	PF01476	N/A	N/A	LysM domain	LysM
COG	UHGV-1533003_65	COG1388	N/A	N/A	LysM repeat	N/A
structural_annotation	UHGV-1533003_65	MF_02014,NF010723,COG1388	N/A	N/A	N/A	N/A
structural_annotation	UHGV-1533003_66	PF01775,NF010188,COG2157	N/A	N/A	N/A	N/A
KOfam	UHGV-1533003_67	K07729	45.5	0.0000000000016	K07729; putative transcriptional regulator	N/A
PHROG	UHGV-1533003_67	phrog_8	55.3	0.0000000000000017	transcriptional regulator	transcription regulation
UniRef90	UHGV-1533003_67	UniRef90_R6WRV4	125.0	9.18e-37	HTH cro/C1-type domain-containing protein	N/A
eggNOG-mapper	UHGV-1533003_67	411459.RUMOBE_00961	71.6	0.00000000000000349	Bacteriophage CI repressor helix-turn-helix domain	N/A
Pfam	UHGV-1533003_67	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
COG	UHGV-1533003_67	COG3093	N/A	N/A	Plasmid maintenance system antidote protein VapI, contains XRE-type HTH domain	N/A
structural_annotation	UHGV-1533003_67	PF01381,NF041951,COG3655	N/A	N/A	N/A	N/A
KOfam	UHGV-1533003_68	K22299	47.2	0.00000000000045	rghR; HTH-type transcriptional regulator, competence development regulator	N/A
PHROG	UHGV-1533003_68	phrog_8	56.2	7.3e-16	transcriptional regulator	transcription regulation
UniRef90	UHGV-1533003_68	UniRef90_R6X058	245.0	0	DNA-binding helix-turn-helix protein	N/A
eggNOG-mapper	UHGV-1533003_68	1536772.R70723_06535	73.2	0.00000000000000694	addiction module antidote protein HigA	N/A
Pfam	UHGV-1533003_68	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
COG	UHGV-1533003_68	COG3093	N/A	N/A	Plasmid maintenance system antidote protein VapI, contains XRE-type HTH domain	N/A
structural_annotation	UHGV-1533003_68	PF12844,NF041951,COG1476	N/A	N/A	N/A	N/A
UniRef90	UHGV-1533003_69	UniRef90_UPI00082FC8EE	61.2	0.000000531	tetratricopeptide repeat protein	N/A
eggNOG-mapper	UHGV-1533003_69	926561.KB900623_gene722	70.5	0.0000000000956	N/A	N/A
PHROG	UHGV-1533003_70	phrog_26910	90.7	6.5e-27	N/A	unknown function
eggNOG-mapper	UHGV-1533003_70	357809.Cphy_2996	63.9	0.00000000322	N/A	N/A
KOfam	UHGV-1533003_71	K14059	188.5	0	int; integrase	N/A
PHROG	UHGV-1533003_71	phrog_1	179.2	0	integrase	integration and excision
UniRef90	UHGV-1533003_71	UniRef90_R6WJV6	735.0	0	Phage integrase family protein	N/A
eggNOG-mapper	UHGV-1533003_71	1204534.J9QD18_9CAUD	199.0	0	Phage integrase family	N/A
Pfam	UHGV-1533003_71	PF14657	N/A	N/A	Arm DNA-binding domain	Arm-DNA-bind_4
Pfam	UHGV-1533003_71	PF14659	N/A	N/A	Phage integrase, N-terminal SAM-like domain	Phage_int_SAM_3
Pfam	UHGV-1533003_71	PF00589	N/A	N/A	Phage integrase family	Phage_integrase
structural_annotation	UHGV-1533003_71	PF00589,PF14659,PF14657,MF_01808,TIGR02224,COG4974	N/A	N/A	N/A	N/A

All viral genomes

ID	Representative?	Length (bps)	% GC Content	CheckV Completeness	geNomad Score
UHGV-1533003	Yes	33,562	40	54	1