vOTU vOTU-109741

vOTU: vOTU-109741

Overview

Genome (FASTA) Annotation Track (GFF) Proteins (FASTA) Protein Annotation (TSV)

Cluster properties
vOTU ID	vOTU-109741
Number of genomes	1
Taxonomy (ICTV)	Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes
Taxonomy (UHGV)	vFAM-00003 → vSUBFAM-00027 → vGENUS-09551 → vOTU-109741
Host lineage	Bacteria → Firmicutes_A → Clostridia → Oscillospirales → Acutalibacteraceae → Ruminococcus_E → Ruminococcus_E bromii_B
Host range breadth	Species
Lifestyle	temperate (evidence: BACPHLIP)

Representative genome
Genome ID	UHGV-0014361
Biosample ID	SAMEA4766207
Genome length (bp)	38,755 bps
CheckV completeness	84.42% (Medium-quality)
CDS count	52
CDS density	92.31%
tRNA count	0
Integrase	No
Viral confidence	Confident

Host assignment details
Assignment method	CRISPR
CRISPR-predicted host lineage	Bacteria → Firmicutes_A → Clostridia → Oscillospirales → Acutalibacteraceae → Ruminococcus_E → Ruminococcus_E bromii_B	Total connections	915	Host agreement	82.4
PHIST-predicted host lineage	Bacteria → Firmicutes_A → Clostridia → Oscillospirales → Acutalibacteraceae → Ruminococcus_E → Ruminococcus_E bromii_B	Total connections	44	Host agreement	90.91

Representative genome content

Select to view: Genome Viewer Functional Annotation

Genome view (completeness: 84.42)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
KOfam	UHGV-0014361_1	K01448	57.1	2.6e-16	amiABC; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]	N/A
PHROG	UHGV-0014361_1	phrog_1794	83.2	4e-24	amidase	lysis
UniRef90	UHGV-0014361_1	UniRef90_A0A373KFY8	431.0	0	SH3b domain-containing protein	N/A
eggNOG-mapper	UHGV-0014361_1	1226322.HMPREF1545_03576	88.6	1.82e-17	N-acetylmuramoyl-L-alanine amidase	N/A
Pfam	UHGV-0014361_1	PF01520	N/A	N/A	N-acetylmuramoyl-L-alanine amidase	Amidase_3
Pfam	UHGV-0014361_1	PF08239	N/A	N/A	Bacterial SH3 domain	SH3_3
COG	UHGV-0014361_1	COG0860	N/A	N/A	N-acetylmuramoyl-L-alanine amidase	N/A
structural_annotation	UHGV-0014361_1	PF01520,PF01471,MF_00562,TIGR02883,TIGR03979,COG0860,COG3409	N/A	N/A	N/A	N/A
PHROG	UHGV-0014361_2	phrog_199	75.1	7.6e-22	holin	lysis
UniRef90	UHGV-0014361_2	UniRef90_A0A2N0ULW7	264.0	0	Holin	N/A
eggNOG-mapper	UHGV-0014361_2	1160721.RBI_I01565	143.0	9.04959e-42	Bacteriophage holin family	N/A
Pfam	UHGV-0014361_2	PF05105	N/A	N/A	Bacteriophage holin family	Phage_holin_4_1
NCBIFam	UHGV-0014361_2	TIGR01593.1	N/A	N/A	toxin secretion/phage lysis holin	N/A
COG	UHGV-0014361_2	COG4824	N/A	N/A	Phage-related holin (Lysis protein)	N/A
structural_annotation	UHGV-0014361_2	PF05105,TIGR01593,COG4824	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0014361_4	PF10651,PF15432,PF08931,TIGR03711	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0014361_5	PF14594,NF033848,COG3500	N/A	N/A	N/A	N/A
PHROG	UHGV-0014361_6	phrog_1194	60.5	2.4e-17	N/A	unknown function
eggNOG-mapper	UHGV-0014361_6	397290.C810_05238	94.4	7.23e-23	N/A	N/A
Pfam	UHGV-0014361_6	PF20458	N/A	N/A	N/A	DUF6711
structural_annotation	UHGV-0014361_6	PF20458,TIGR01633,COG3499	N/A	N/A	N/A	N/A
PHROG	UHGV-0014361_7	phrog_1535	474.0	0	tail length tape measure protein	tail
UniRef90	UHGV-0014361_7	UniRef90_A0A2N0ULX3	1977.0	0	Phage-related protein	N/A
eggNOG-mapper	UHGV-0014361_7	476272.RUMHYD_01785	350.0	0	phage tail tape measure protein	N/A
COG	UHGV-0014361_7	COG1511	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0014361_7	PF20155,COG3941	N/A	N/A	N/A	N/A
UniRef90	UHGV-0014361_8	UniRef90_A0A174ZSI5	127.0	3.85e-33	Phage minor capsid protein 2	N/A
eggNOG-mapper	UHGV-0014361_8	411902.CLOBOL_02557	117.0	1.54e-28	N/A	N/A
Pfam	UHGV-0014361_8	PF06152	N/A	N/A	Phage minor capsid protein 2	Phage_min_cap2
PHROG	UHGV-0014361_11	phrog_706	141.8	3.69943e-42	N/A	unknown function
UniRef90	UHGV-0014361_11	UniRef90_A0A2N0ULW2	366.0	0	Bacteriophage Gp15 protein	N/A
eggNOG-mapper	UHGV-0014361_11	1160721.RBI_II00530	213.0	0	Bacteriophage Gp15 protein	N/A
Pfam	UHGV-0014361_11	PF06854	N/A	N/A	Bacteriophage Gp15 protein	Phage_Gp15
structural_annotation	UHGV-0014361_11	PF06854	N/A	N/A	N/A	N/A
PHROG	UHGV-0014361_12	phrog_11299	136.5	1.2e-40	N/A	unknown function
eggNOG-mapper	UHGV-0014361_12	1298920.KI911353_gene2067	75.9	0.00000000000000174	N/A	N/A
structural_annotation	UHGV-0014361_12	PF10666	N/A	N/A	N/A	N/A
PHROG	UHGV-0014361_13	phrog_3099	149.7	1.26117e-44	N/A	unknown function
eggNOG-mapper	UHGV-0014361_13	1160721.RBI_II00532	236.0	0	N/A	N/A
structural_annotation	UHGV-0014361_13	PF06199,TIGR02126,COG5437	N/A	N/A	N/A	N/A
PHROG	UHGV-0014361_14	phrog_3266	106.7	1.4e-31	tail completion	connector
eggNOG-mapper	UHGV-0014361_14	1449050.JNLE01000003_gene3885	141.0	3.06002e-41	N/A	N/A
structural_annotation	UHGV-0014361_14	PF20765	N/A	N/A	N/A	N/A
PHROG	UHGV-0014361_15	phrog_556	118.2	2.3e-35	minor head protein	head and packaging
UniRef90	UHGV-0014361_15	UniRef90_UPI00189BC4F9	181.0	0	minor capsid protein	N/A
eggNOG-mapper	UHGV-0014361_15	1449050.JNLE01000003_gene3886	176.0	0	N/A	N/A
Pfam	UHGV-0014361_15	PF11114	N/A	N/A	Minor capsid protein	Minor_capsid_2
structural_annotation	UHGV-0014361_15	PF11114	N/A	N/A	N/A	N/A
PHROG	UHGV-0014361_16	phrog_3366	73.6	2.1e-21	N/A	unknown function
eggNOG-mapper	UHGV-0014361_16	1449050.JNLE01000003_gene3887	89.0	6.3e-21	N/A	N/A
Pfam	UHGV-0014361_16	PF20536	N/A	N/A	N/A	DUF6751
structural_annotation	UHGV-0014361_16	PF20536,TIGR01563	N/A	N/A	N/A	N/A
PHROG	UHGV-0014361_17	phrog_541	80.8	1.4e-23	head-tail adaptor	connector
UniRef90	UHGV-0014361_17	UniRef90_A0A371AQT0	108.0	2.75e-28	N/A	N/A
eggNOG-mapper	UHGV-0014361_17	1449050.JNLE01000003_gene3888	81.6	2.41e-18	N/A	N/A
PHROG	UHGV-0014361_18	phrog_544	293.0	0	major head protein	head and packaging
UniRef90	UHGV-0014361_18	UniRef90_UPI000F53CC4F	476.0	0	N4-gp56 family major capsid protein	N/A
eggNOG-mapper	UHGV-0014361_18	936580.HMPREF1516_0718	332.0	0	N/A	N/A
NCBIFam	UHGV-0014361_18	TIGR04387.1	N/A	N/A	N4-gp56 family major capsid protein	N/A
structural_annotation	UHGV-0014361_18	PF05065,MF_04119,TIGR04387,COG4653	N/A	N/A	N/A	N/A
PHROG	UHGV-0014361_19	phrog_194	98.4	8.5e-29	head scaffolding protein	head and packaging
UniRef90	UHGV-0014361_19	UniRef90_A0A2N0ULW9	284.0	0	Phage minor structural protein GP20	N/A
eggNOG-mapper	UHGV-0014361_19	742765.HMPREF9457_02126	160.0	0	COG NOG36366 non supervised orthologous group	N/A
Pfam	UHGV-0014361_19	PF06810	N/A	N/A	Phage minor structural protein GP20	Phage_GP20
structural_annotation	UHGV-0014361_19	PF06810	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0014361_20	PF01281	N/A	N/A	N/A	N/A
PHROG	UHGV-0014361_21	phrog_478	129.3	1.4e-38	site-specific recombination directionality factor RDF	integration and excision
UniRef90	UHGV-0014361_21	UniRef90_A0A285PT53	146.0	1.03976e-42	Prokaryotic membrane lipoprotein lipid attachment site profile	N/A
eggNOG-mapper	UHGV-0014361_21	478749.BRYFOR_08526	148.0	2.24208e-44	N/A	N/A
KOfam	UHGV-0014361_23	K11044	47.8	0.0000000000002	spyA; C3 family ADP-ribosyltransferase [EC:2.4.2.-]	N/A
PHROG	UHGV-0014361_23	phrog_581	318.7	0	minor head protein	head and packaging
UniRef90	UHGV-0014361_23	UniRef90_A0A2N0ULU5	1279.0	0	Putative ADP-ribosyltransferase Certhrax	N/A
eggNOG-mapper	UHGV-0014361_23	658655.HMPREF0988_02563	370.0	0	Phage minor capsid protein 2	N/A
Pfam	UHGV-0014361_23	PF06152	N/A	N/A	Phage minor capsid protein 2	Phage_min_cap2
Pfam	UHGV-0014361_23	PF03496	N/A	N/A	ADP-ribosyltransferase exoenzyme	ADPrib_exo_Tox
COG	UHGV-0014361_23	COG2369	N/A	N/A	N/A	N/A
PHROG	UHGV-0014361_24	phrog_533	313.7	0	portal protein	head and packaging
UniRef90	UHGV-0014361_24	UniRef90_A0A2N0ULU9	812.0	0	Phage portal protein, putative, A118 family	N/A
eggNOG-mapper	UHGV-0014361_24	1304866.K413DRAFT_3035	460.0	0	N/A	N/A
structural_annotation	UHGV-0014361_24	PF05133,MF_04120,TIGR01542,COG5511	N/A	N/A	N/A	N/A
KOfam	UHGV-0014361_25	K06909	400.1	0	xtmB; phage terminase large subunit	N/A
PHROG	UHGV-0014361_25	phrog_3717	147.0	2.8026e-45	terminase large subunit	head and packaging
UniRef90	UHGV-0014361_25	UniRef90_A0A2N0ULW5	1026.0	0	Phage terminase, large subunit, PBSX family	N/A
eggNOG-mapper	UHGV-0014361_25	411461.DORFOR_01162	616.0	0	Phage terminase, large subunit, PBSX family	N/A
Pfam	UHGV-0014361_25	PF04466	N/A	N/A	Phage terminase large subunit	Terminase_3
Pfam	UHGV-0014361_25	PF17288	N/A	N/A	Terminase RNAseH like domain	Terminase_3C
NCBIFam	UHGV-0014361_25	TIGR01547.1	N/A	N/A	PBSX family phage terminase large subunit	N/A
COG	UHGV-0014361_25	COG1783	N/A	N/A	Phage terminase large subunit	N/A
structural_annotation	UHGV-0014361_25	PF04466,PF17288,MF_04145,TIGR01547,COG1783	N/A	N/A	N/A	N/A
PHROG	UHGV-0014361_26	phrog_36	82.1	7.5e-24	transcriptional regulator	transcription regulation
UniRef90	UHGV-0014361_26	UniRef90_A0A2N0UXQ6	249.0	0	N/A	N/A
eggNOG-mapper	UHGV-0014361_26	1401067.HMPREF0872_06835	85.5	2.11e-19	N/A	N/A
Pfam	UHGV-0014361_26	PF07374	N/A	N/A	N/A	DUF1492
structural_annotation	UHGV-0014361_26	PF07374,MF_00674,TIGR01636,COG2739	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0014361_27	PF14282,COG5570	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0014361_31	PF02559,MF_00667,TIGR02861	N/A	N/A	N/A	N/A
PHROG	UHGV-0014361_32	phrog_140	90.5	2e-26	RusA-like Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0014361_32	UniRef90_A0A2N0UXU6	265.0	0	Holliday junction resolvase	N/A
eggNOG-mapper	UHGV-0014361_32	411462.DORLON_00806	200.0	0	Endodeoxyribonuclease RusA	N/A
Pfam	UHGV-0014361_32	PF05866	N/A	N/A	Endodeoxyribonuclease RusA	RusA
COG	UHGV-0014361_32	COG4570	N/A	N/A	Holliday junction resolvase RusA (prophage-encoded endonuclease)	N/A
structural_annotation	UHGV-0014361_32	PF05866,NF007305,COG4570	N/A	N/A	N/A	N/A
KOfam	UHGV-0014361_33	K07505	410.1	0	repA; regulatory protein RepA	N/A
PHROG	UHGV-0014361_33	phrog_2597	1171.1	0	DNA primase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0014361_33	UniRef90_A0A2N0UXP7	1444.0	0	Regulatory protein RepA	N/A
eggNOG-mapper	UHGV-0014361_33	394503.Ccel_3304	964.0	0	Primase C terminal 2 (PriCT-2)	N/A
Pfam	UHGV-0014361_33	PF08707	N/A	N/A	Primase C terminal 2 (PriCT-2)	PriCT_2
Pfam	UHGV-0014361_33	PF13481	N/A	N/A	AAA domain	AAA_25
COG	UHGV-0014361_33	COG3598	N/A	N/A	RecA-family ATPase	N/A
structural_annotation	UHGV-0014361_33	PF13481,PF16793,PF08220,MF_00350,MF_00700,NF006606,NF001641,COG3598,COG3285	N/A	N/A	N/A	N/A
KOfam	UHGV-0014361_34	K17677	362.6	0	IRC3; ATP-dependent helicase IRC3 [EC:5.6.2.-]	N/A
PHROG	UHGV-0014361_34	phrog_16	296.3	0	DNA helicase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0014361_34	UniRef90_A0A412ULZ3	1051.0	0	ATP-dependent helicase	N/A
eggNOG-mapper	UHGV-0014361_34	1235798.C817_03499	840.0	0	helicase superfamily c-terminal domain	N/A
PADLOC	UHGV-0014361_34	mREase_IV_00005	134.9	6.50001e-40	Type IV methyl-directed restriction enzyme	RM
Pfam	UHGV-0014361_34	PF04851	N/A	N/A	Type III restriction enzyme, res subunit	ResIII
Pfam	UHGV-0014361_34	PF00271	N/A	N/A	Helicase conserved C-terminal domain	Helicase_C
COG	UHGV-0014361_34	COG1061	N/A	N/A	Superfamily II DNA or RNA helicase	N/A
structural_annotation	UHGV-0014361_34	PF04851,PF16203,MF_01489,NF008521,COG1061	N/A	N/A	N/A	N/A
PHROG	UHGV-0014361_35	phrog_2698	177.2	0	N/A	unknown function
UniRef90	UHGV-0014361_35	UniRef90_UPI000F54335B	202.0	0	N/A	N/A
eggNOG-mapper	UHGV-0014361_35	742723.HMPREF9477_00927	139.0	1.05e-39	N/A	N/A
structural_annotation	UHGV-0014361_35	PF17426,NF005674	N/A	N/A	N/A	N/A
PHROG	UHGV-0014361_36	phrog_124	265.6	0	Sak4-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0014361_36	UniRef90_A0A2N0UXR5	670.0	0	Phage nucleotide-binding protein	N/A
eggNOG-mapper	UHGV-0014361_36	1123304.AQYA01000037_gene196	425.0	0	AAA domain	N/A
Pfam	UHGV-0014361_36	PF13479	N/A	N/A	AAA domain	AAA_24
structural_annotation	UHGV-0014361_36	PF13479,MF_00268,TIGR01618,COG0468	N/A	N/A	N/A	N/A
KOfam	UHGV-0014361_38	K03546	57.7	9.8e-17	sbcC, rad50; DNA repair protein SbcC/Rad50	N/A
PHROG	UHGV-0014361_38	phrog_1499	478.9	0	N/A	unknown function
UniRef90	UHGV-0014361_38	UniRef90_A0A2N0UXU2	748.0	0	Chromosome segregation protein	N/A
eggNOG-mapper	UHGV-0014361_38	645991.Sgly_0320	499.0	0	domain protein	N/A
Pfam	UHGV-0014361_38	PF13476	N/A	N/A	AAA domain	AAA_23
COG	UHGV-0014361_38	COG1196	N/A	N/A	Chromosome segregation ATPase Smc	N/A
structural_annotation	UHGV-0014361_38	TIGR03185,COG5293	N/A	N/A	N/A	N/A
UniRef90	UHGV-0014361_42	UniRef90_A0A2N0ULT9	137.0	2.09004e-41	DNA binding domain, excisionase family	N/A
eggNOG-mapper	UHGV-0014361_42	1283300.ATXB01000001_gene1737	47.0	0.0000034	DNA excision	N/A
Pfam	UHGV-0014361_42	PF12728	N/A	N/A	Helix-turn-helix domain	HTH_17
NCBIFam	UHGV-0014361_42	TIGR01764.1	N/A	N/A	excisionase family DNA-binding protein	N/A
COG	UHGV-0014361_42	COG3311	N/A	N/A	DNA-binding transcriptional regulator AlpA	N/A
structural_annotation	UHGV-0014361_42	PF12728,NF040990,COG3311	N/A	N/A	N/A	N/A
PHROG	UHGV-0014361_44	phrog_2232	219.6	0	N/A	unknown function
UniRef90	UHGV-0014361_44	UniRef90_UPI00164B82D7	434.0	0	N/A	N/A
eggNOG-mapper	UHGV-0014361_44	748224.HMPREF9436_01448	160.0	4.2039e-45	N/A	N/A
Pfam	UHGV-0014361_44	PF14337	N/A	N/A	Abortive infection alpha	Abi_alpha
structural_annotation	UHGV-0014361_44	PF14337,TIGR03899	N/A	N/A	N/A	N/A
UniRef90	UHGV-0014361_46	UniRef90_UPI001494A832	48.9	0.00000401	helix-turn-helix domain-containing protein	N/A
Pfam	UHGV-0014361_46	PF13443	N/A	N/A	Cro/C1-type HTH DNA-binding domain	HTH_26
structural_annotation	UHGV-0014361_46	PF05339,NF041951,COG1476	N/A	N/A	N/A	N/A
UniRef90	UHGV-0014361_47	UniRef90_A0A373XLN2	274.0	0	XRE family transcriptional regulator	N/A
eggNOG-mapper	UHGV-0014361_47	1235793.C809_00679	100.0	2.05e-25	Helix-turn-helix XRE-family like proteins	N/A
Pfam	UHGV-0014361_47	PF13443	N/A	N/A	Cro/C1-type HTH DNA-binding domain	HTH_26
structural_annotation	UHGV-0014361_47	PF05339,NF007257,COG3655	N/A	N/A	N/A	N/A
PHROG	UHGV-0014361_48	phrog_1914	145.8	2.39622e-43	N/A	unknown function
UniRef90	UHGV-0014361_48	UniRef90_UPI000E543E50	342.0	0	ImmA/IrrE family metallo-endopeptidase	N/A
eggNOG-mapper	UHGV-0014361_48	1160721.RBI_I01604	169.0	0	N/A	N/A
Pfam	UHGV-0014361_48	PF06114	N/A	N/A	IrrE N-terminal-like domain	Peptidase_M78
COG	UHGV-0014361_48	COG2856	N/A	N/A	Zn-dependent peptidase ImmA, M78 family	N/A
structural_annotation	UHGV-0014361_48	PF06114,COG2856	N/A	N/A	N/A	N/A
UniRef90	UHGV-0014361_49	UniRef90_A0A374DTF3	96.7	2.04e-22	N/A	N/A
KOfam	UHGV-0014361_50	K14059	210.2	0	int; integrase	N/A
PHROG	UHGV-0014361_50	phrog_1	182.6	0	integrase	integration and excision
UniRef90	UHGV-0014361_50	UniRef90_A0A2N0ULT2	773.0	0	Integrase	N/A
eggNOG-mapper	UHGV-0014361_50	428125.CLOLEP_02743	314.0	0	Belongs to the 'phage' integrase family	N/A
Pfam	UHGV-0014361_50	PF00589	N/A	N/A	Phage integrase family	Phage_integrase
COG	UHGV-0014361_50	COG4974	N/A	N/A	Site-specific recombinase XerD	N/A
structural_annotation	UHGV-0014361_50	PF00589,PF14659,MF_02055,TIGR02224,COG4974	N/A	N/A	N/A	N/A
KOfam	UHGV-0014361_51	K15640	141.8	6.00036e-42	K15640, phoE; uncharacterized phosphatase	N/A
PHROG	UHGV-0014361_51	phrog_12933	106.1	3.7e-31	N/A	unknown function
UniRef90	UHGV-0014361_51	UniRef90_A0A2N0UZ23	350.0	0	2,3-bisphosphoglycerate-dependent phosphoglycerate mutase	N/A
eggNOG-mapper	UHGV-0014361_51	1408304.JAHA01000006_gene768	281.0	0	Phosphoglycerate mutase family	N/A
Pfam	UHGV-0014361_51	PF00300	N/A	N/A	Histidine phosphatase superfamily (branch 1)	His_Phos_1
COG	UHGV-0014361_51	COG0406	N/A	N/A	Broad specificity phosphatase PhoE	N/A
structural_annotation	UHGV-0014361_51	PF00300,MF_01040,NF009994,COG0406	N/A	N/A	N/A	N/A
KOfam	UHGV-0014361_52	K08281	103.6	1e-30	pncA; nicotinamidase/pyrazinamidase [EC:3.5.1.19 3.5.1.-]	N/A
PHROG	UHGV-0014361_52	phrog_19305	107.5	3e-33	N/A	unknown function
UniRef90	UHGV-0014361_52	UniRef90_A0A374MZ53	345.0	0	Cysteine hydrolase	N/A
eggNOG-mapper	UHGV-0014361_52	1392493.JIAB01000001_gene1643	251.0	0	Isochorismatase family	N/A
Pfam	UHGV-0014361_52	PF00857	N/A	N/A	Isochorismatase family	Isochorismatase
COG	UHGV-0014361_52	COG1335	N/A	N/A	Nicotinamidase-related amidase	N/A
structural_annotation	UHGV-0014361_52	PF00857,MF_00830,NF008623,COG1335	N/A	N/A	N/A	N/A

All viral genomes

ID	Representative?	Length (bps)	% GC Content	CheckV Completeness	geNomad Score
UHGV-0014361	Yes	38,755	42	84	1