vOTU vOTU-109807

vOTU: vOTU-109807

Overview

Genome (FASTA) Annotation Track (GFF) Proteins (FASTA) Protein Annotation (TSV)

Cluster properties
vOTU ID	vOTU-109807
Number of genomes	2
Taxonomy (ICTV)	Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes
Taxonomy (UHGV)	vFAM-00007 → vSUBFAM-01331 → vGENUS-01302 → vOTU-109807
Host lineage	Bacteria → Firmicutes_A → Clostridia → Lachnospirales → Lachnospiraceae → Oliverpabstia
Host range breadth	Genus
Lifestyle	lytic (evidence: BACPHLIP)

Representative genome
Genome ID	UHGV-1395293
Biosample ID	N/A
Genome length (bp)	36,503 bps
CheckV completeness	60.50% (Medium-quality)
CDS count	56
CDS density	93.35%
tRNA count	0
Integrase	No
Viral confidence	Confident

Host assignment details
Assignment method	CRISPR
CRISPR-predicted host lineage	Bacteria → Firmicutes_A → Clostridia → Lachnospirales → Lachnospiraceae → Oliverpabstia	Total connections	277	Host agreement	78.7
PHIST-predicted host lineage	Bacteria → Firmicutes_A → Clostridia → Lachnospirales → Lachnospiraceae → Oliverpabstia → Oliverpabstia intestinalis	Total connections	2	Host agreement	100

Representative genome content

Select to view: Genome Viewer Functional Annotation

Genome view (completeness: 60.5)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
PHROG	UHGV-1395293_1	phrog_355	41.7	0.000000000018	nucleoside 2-deoxyribosyltransferase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1395293_1	UniRef90_A0A396KGT7	121.0	1.4e-34	N/A	N/A
eggNOG-mapper	UHGV-1395293_1	97138.C820_00250	86.3	2.21e-21	N/A	N/A
structural_annotation	UHGV-1395293_1	PF14359,NF010124	N/A	N/A	N/A	N/A
PHROG	UHGV-1395293_2	phrog_918	96.3	1.5e-28	N/A	unknown function
UniRef90	UHGV-1395293_2	UniRef90_UPI001D092FF5	163.0	0	N/A	N/A
eggNOG-mapper	UHGV-1395293_2	1256908.HMPREF0373_00480	164.0	0	N/A	N/A
Pfam	UHGV-1395293_2	PF19791	N/A	N/A	N/A	DUF6275
structural_annotation	UHGV-1395293_2	PF19791	N/A	N/A	N/A	N/A
PHROG	UHGV-1395293_3	phrog_38	166.7	0	terminase large subunit	head and packaging
UniRef90	UHGV-1395293_3	UniRef90_A0A318EQM2	520.0	0	Putative phage terminase large subunit-like protein	N/A
eggNOG-mapper	UHGV-1395293_3	1123263.AUKY01000015_gene1608	309.0	0	chromosome segregation	N/A
COG	UHGV-1395293_3	COG5410	N/A	N/A	N/A	N/A
structural_annotation	UHGV-1395293_3	PF17289,PF05876,MF_04147,NF033889,COG5362,COG5410	N/A	N/A	N/A	N/A
PHROG	UHGV-1395293_4	phrog_36	61.5	1.6e-17	transcriptional regulator	transcription regulation
UniRef90	UHGV-1395293_4	UniRef90_A0A845QQ43	72.0	0.000000000000247	N/A	N/A
eggNOG-mapper	UHGV-1395293_4	1410670.JHXF01000015_gene2276	56.2	0.0000000502	N/A	N/A
structural_annotation	UHGV-1395293_4	PF07374,MF_00674,NF008895,COG1191	N/A	N/A	N/A	N/A
Pfam	UHGV-1395293_5	PF10601	N/A	N/A	LITAF-like zinc ribbon domain	zf-LITAF-like
PHROG	UHGV-1395293_6	phrog_64	154.4	0	portal protein	head and packaging
UniRef90	UHGV-1395293_6	UniRef90_R6CA99	571.0	0	SPP1 family phage portal protein	N/A
eggNOG-mapper	UHGV-1395293_6	1298920.KI911353_gene2663	412.0	0	Phage portal protein, SPP1 Gp6-like	N/A
Pfam	UHGV-1395293_6	PF05133	N/A	N/A	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
structural_annotation	UHGV-1395293_6	PF05133,MF_04120,TIGR01538,COG5511	N/A	N/A	N/A	N/A
KOfam	UHGV-1395293_7	K04068	187.2	0	nrdG; anaerobic ribonucleoside-triphosphate reductase activating protein [EC:1.97.1.4]	N/A
PHROG	UHGV-1395293_7	phrog_626	195.9	0	anaerobic ribonucleotide reductase small subunit	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1395293_7	UniRef90_A0A396PMA6	247.0	0	Anaerobic ribonucleoside-triphosphate reductase-activating protein	N/A
eggNOG-mapper	UHGV-1395293_7	1235790.C805_02369	223.0	0	Activation of anaerobic ribonucleoside-triphosphate reductase under anaerobic conditions by generation of an organic free radical, using S-adenosylmethionine and reduced flavodoxin as cosubstrates to produce 5'-deoxy-adenosine	N/A
Pfam	UHGV-1395293_7	PF13353	N/A	N/A	4Fe-4S single cluster domain	Fer4_12
NCBIFam	UHGV-1395293_7	TIGR02491.1	N/A	N/A	anaerobic ribonucleoside-triphosphate reductase activating protein	N/A
COG	UHGV-1395293_7	COG0602	N/A	N/A	Organic radical activating enzyme NrdG/QueE	N/A
structural_annotation	UHGV-1395293_7	PF13353,MF_00917,TIGR02491,COG0602	N/A	N/A	N/A	N/A
UniRef90	UHGV-1395293_8	UniRef90_R6C0B6	62.4	0.00000000998	Phage capsid scaffolding protein	N/A
PHROG	UHGV-1395293_9	phrog_909	82.7	3.3e-24	major head protein	head and packaging
UniRef90	UHGV-1395293_9	UniRef90_R7BGI8	209.0	0	Phage major capsid protein	N/A
eggNOG-mapper	UHGV-1395293_9	1536772.R70723_06665	58.5	0.00000000146	N/A	N/A
PHROG	UHGV-1395293_10	phrog_29	161.5	0	major head protein	head and packaging
UniRef90	UHGV-1395293_10	UniRef90_A0A1C5WIT9	582.0	0	Phage major capsid protein E	N/A
eggNOG-mapper	UHGV-1395293_10	756499.Desde_1083	142.0	2.02e-36	Phage major capsid protein E	N/A
Pfam	UHGV-1395293_10	PF03864	N/A	N/A	Phage major capsid protein E	Phage_cap_E
structural_annotation	UHGV-1395293_10	PF03864,MF_04133,NF041162,COG4653	N/A	N/A	N/A	N/A
UniRef90	UHGV-1395293_11	UniRef90_A0A416G2T8	61.6	0.0000000000979	Rho_N domain-containing protein	N/A
structural_annotation	UHGV-1395293_11	PF21169	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-1395293_12	397290.C810_01402	51.6	0.000000701	N/A	N/A
PHROG	UHGV-1395293_13	phrog_4105	80.5	1.6e-23	N/A	unknown function
eggNOG-mapper	UHGV-1395293_13	411459.RUMOBE_00911	149.0	1.4013e-45	N/A	N/A
PHROG	UHGV-1395293_14	phrog_1129	70.4	1.7e-20	holin	lysis
UniRef90	UHGV-1395293_14	UniRef90_A0A8D9UII9	129.0	2.78e-37	Holin	N/A
eggNOG-mapper	UHGV-1395293_14	411461.DORFOR_00721	102.0	2.89e-27	N/A	N/A
Pfam	UHGV-1395293_14	PF16079	N/A	N/A	Phage holin family Hol44, in holin superfamily V	Phage_holin_5_2
structural_annotation	UHGV-1395293_14	PF06946	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-1395293_15	1298920.KI911353_gene2656	62.8	0.00000000016	N/A	N/A
structural_annotation	UHGV-1395293_15	PF07405,TIGR01563,COG5614	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-1395293_16	1298920.KI911353_gene2654	175.0	0	N/A	N/A
AcrCatalog	UHGV-1395293_16	cluster_24841	108.0	6.83e-32	NA	N/A
structural_annotation	UHGV-1395293_17	PF05657	N/A	N/A	N/A	N/A
UniRef90	UHGV-1395293_18	UniRef90_R7BGF5	182.0	0	Phage tail protein	N/A
eggNOG-mapper	UHGV-1395293_18	1232453.BAIF02000058_gene1634	54.3	0.0000004	N/A	N/A
structural_annotation	UHGV-1395293_18	PF16463,TIGR02126,COG5437	N/A	N/A	N/A	N/A
UniRef90	UHGV-1395293_19	UniRef90_UPI001D0975F6	116.0	8.84e-31	N/A	N/A
PHROG	UHGV-1395293_21	phrog_1535	216.8	0	tail length tape measure protein	tail
UniRef90	UHGV-1395293_21	UniRef90_C0BA73	456.0	0	Transglycosylase SLT domain protein	N/A
eggNOG-mapper	UHGV-1395293_21	1232453.BAIF02000058_gene1637	335.0	0	phage tail tape measure protein	N/A
COG	UHGV-1395293_21	COG5412	N/A	N/A	Phage-related protein	N/A
PHROG	UHGV-1395293_22	phrog_1194	112.6	2.1e-33	N/A	unknown function
eggNOG-mapper	UHGV-1395293_22	1121866.AUGK01000003_gene1438	88.6	5.2e-21	N/A	N/A
Pfam	UHGV-1395293_22	PF20458	N/A	N/A	N/A	DUF6711
structural_annotation	UHGV-1395293_22	PF20458,TIGR02126,COG3499	N/A	N/A	N/A	N/A
PHROG	UHGV-1395293_23	phrog_6616	648.3	0	tail protein	tail
UniRef90	UHGV-1395293_23	UniRef90_A0A1C5RZB4	717.0	0	Peptidase S74 domain-containing protein	N/A
eggNOG-mapper	UHGV-1395293_23	476272.RUMHYD_01992	307.0	0	N/A	N/A
structural_annotation	UHGV-1395293_23	PF05113,PF18432,NF033848,NF011735,COG4379	N/A	N/A	N/A	N/A
PHROG	UHGV-1395293_24	phrog_18444	79.7	2.2e-23	N/A	unknown function
UniRef90	UHGV-1395293_24	UniRef90_UPI0011788049	53.5	0.0000000604	peptide chain release factor 2	N/A
eggNOG-mapper	UHGV-1395293_24	931276.Cspa_c07570	49.7	0.000000291	N/A	N/A
PHROG	UHGV-1395293_28	phrog_443	58.3	2.2e-16	holin	lysis
UniRef90	UHGV-1395293_28	UniRef90_UPI0018AA56FB	93.2	1.22e-23	holin	N/A
eggNOG-mapper	UHGV-1395293_28	397290.C810_03257	90.5	2.65e-23	Putative lactococcus lactis phage r1t holin	N/A
Pfam	UHGV-1395293_28	PF16945	N/A	N/A	Putative lactococcus lactis phage r1t holin	Phage_r1t_holin
structural_annotation	UHGV-1395293_28	PF16945	N/A	N/A	N/A	N/A
KOfam	UHGV-1395293_29	K22519	40.6	0.000000000027	PTAC5; protein disulfide-isomerase [EC:5.3.4.1]	N/A
PHROG	UHGV-1395293_29	phrog_20388	80.9	9e-24	endolysin	lysis
UniRef90	UHGV-1395293_29	UniRef90_R6H452	382.0	0	PG_binding_1 domain-containing protein	N/A
eggNOG-mapper	UHGV-1395293_29	610130.Closa_1415	165.0	2.38221e-44	Peptidoglycan-binding domain 1 protein	N/A
Pfam	UHGV-1395293_29	PF18013	N/A	N/A	Phage tail lysozyme	Phage_lysozyme2
Pfam	UHGV-1395293_29	PF01471	N/A	N/A	Putative peptidoglycan binding domain	PG_binding_1
COG	UHGV-1395293_29	COG3409	N/A	N/A	Peptidoglycan-binding (PGRP) domain of peptidoglycan hydrolases	N/A
structural_annotation	UHGV-1395293_29	PF18013,PF01471,COG3409	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-1395293_30	1158608.I583_00641	52.4	0.00000428	Helix-turn-helix XRE-family like proteins	N/A
Pfam	UHGV-1395293_30	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
COG	UHGV-1395293_30	COG1476	N/A	N/A	DNA-binding transcriptional regulator, XRE-family HTH domain	N/A
structural_annotation	UHGV-1395293_30	PF13560,MF_00535,NF041951,COG1476	N/A	N/A	N/A	N/A
PHROG	UHGV-1395293_32	phrog_2967	47.4	0.00000000000036	transcriptional regulator	transcription regulation
UniRef90	UHGV-1395293_32	UniRef90_UPI001D029144	169.0	0	transcriptional regulator	N/A
eggNOG-mapper	UHGV-1395293_32	457412.RSAG_00795	109.0	8.14e-29	sequence-specific DNA binding	N/A
Pfam	UHGV-1395293_32	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
COG	UHGV-1395293_32	COG1396	N/A	N/A	Transcriptional regulator, contains XRE-family HTH domain	N/A
structural_annotation	UHGV-1395293_32	PF01381,NF007257,COG3655	N/A	N/A	N/A	N/A
UniRef90	UHGV-1395293_33	UniRef90_UPI001D0090A6	107.0	6.32e-29	N/A	N/A
eggNOG-mapper	UHGV-1395293_33	411470.RUMGNA_03231	95.1	5.97e-25	N/A	N/A
Pfam	UHGV-1395293_33	PF05339	N/A	N/A	N/A	DUF739
COG	UHGV-1395293_33	COG3655	N/A	N/A	DNA-binding transcriptional regulator, XRE family	N/A
structural_annotation	UHGV-1395293_33	PF05339,NF002773,COG1476	N/A	N/A	N/A	N/A
KOfam	UHGV-1395293_34	K07741	192.6	0	antB; anti-repressor protein	N/A
PHROG	UHGV-1395293_34	phrog_63	174.7	0	anti-repressor Ant	transcription regulation
UniRef90	UHGV-1395293_34	UniRef90_A0A6N2U2M0	381.0	0	Phage antirepressor protein KilAC domain protein	N/A
eggNOG-mapper	UHGV-1395293_34	658655.HMPREF0988_02592	271.0	0	AntA/AntB antirepressor	N/A
Pfam	UHGV-1395293_34	PF08346	N/A	N/A	AntA/AntB antirepressor	AntA
Pfam	UHGV-1395293_34	PF03374	N/A	N/A	Phage antirepressor protein KilAC domain	ANT
COG	UHGV-1395293_34	COG3561	N/A	N/A	Phage anti-repressor protein Ant	N/A
structural_annotation	UHGV-1395293_34	PF03374,PF08346,TIGR02681,COG3645,COG3561	N/A	N/A	N/A	N/A
PHROG	UHGV-1395293_36	phrog_4292	64.2	1.4e-18	N/A	unknown function
eggNOG-mapper	UHGV-1395293_36	742733.HMPREF9469_05058	77.0	2.62e-18	N/A	N/A
KOfam	UHGV-1395293_40	K10906	91.2	2.1e-33	recE; exodeoxyribonuclease VIII [EC:3.1.11.-]	N/A
PHROG	UHGV-1395293_40	phrog_412	268.5	0	exonuclease VIII	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1395293_40	UniRef90_A0A3D3U8P6	264.0	0	N/A	N/A
eggNOG-mapper	UHGV-1395293_40	1242969.ATCC51562_1602	160.0	1.4013e-45	N/A	N/A
Pfam	UHGV-1395293_40	PF12684	N/A	N/A	N/A	DUF3799
structural_annotation	UHGV-1395293_40	PF12684,MF_03030,TIGR01896,COG2887	N/A	N/A	N/A	N/A
PHROG	UHGV-1395293_41	phrog_3657	332.7	0	N/A	unknown function
eggNOG-mapper	UHGV-1395293_41	1121864.OMO_02139	225.0	0	N/A	N/A
PHROG	UHGV-1395293_42	phrog_1682	52.0	0.000000000000011	RusA-like Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1395293_42	UniRef90_A0A371ATH3	73.2	0.0000000000000502	RusA family crossover junction endodeoxyribonuclease	N/A
eggNOG-mapper	UHGV-1395293_42	1235790.C805_00029	63.9	0.0000000000286	Endonuclease that resolves Holliday junction intermediates made during homologous genetic recombination and DNA repair. Exhibits sequence and structure-selective cleavage of four-way DNA junctions, where it introduces symmetrical nicks in two strands of the same polarity at the 5' side of dinucleotides. Corrects the defects in genetic recombination and DNA repair associated with inactivation of ruvAB or ruvC	N/A
COG	UHGV-1395293_42	COG4570	N/A	N/A	Holliday junction resolvase RusA (prophage-encoded endonuclease)	N/A
structural_annotation	UHGV-1395293_42	PF05866,NF007305,COG4570	N/A	N/A	N/A	N/A
KOfam	UHGV-1395293_43	K03111	123.4	2.9e-36	ssb; single-strand DNA-binding protein	N/A
PHROG	UHGV-1395293_43	phrog_44	131.9	4.5e-39	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1395293_43	UniRef90_A0A1C5WNQ4	193.0	0	Single-stranded DNA-binding protein	N/A
eggNOG-mapper	UHGV-1395293_43	658088.HMPREF0987_02000	189.0	0	Single-strand binding protein family	N/A
Pfam	UHGV-1395293_43	PF00436	N/A	N/A	Single-strand binding protein family	SSB
NCBIFam	UHGV-1395293_43	TIGR00621.2	N/A	N/A	single-stranded DNA-binding protein	N/A
COG	UHGV-1395293_43	COG0629	N/A	N/A	Single-stranded DNA-binding protein	N/A
HAMAP	UHGV-1395293_43	MF_00984	N/A	N/A	Single-stranded DNA-binding protein	N/A
structural_annotation	UHGV-1395293_43	PF00436,MF_00984,NF005580,COG0629	N/A	N/A	N/A	N/A
PHROG	UHGV-1395293_44	phrog_2514	95.7	4.7e-28	DnaD-like helicase loader	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1395293_44	UniRef90_A0A8G7Q5B6	115.0	3.41e-29	DNA replication protein DnaD (Fragment)	N/A
eggNOG-mapper	UHGV-1395293_44	646529.Desaci_3039	114.0	1.61e-28	Transcriptional regulator	N/A
COG	UHGV-1395293_44	COG3935	N/A	N/A	DNA replication protein DnaD	N/A
PHROG	UHGV-1395293_45	phrog_9804	139.2	2.29995e-41	N/A	unknown function
UniRef90	UHGV-1395293_45	UniRef90_A0A3A6JKE0	161.0	0	Inhibitor_G39P domain-containing protein	N/A
eggNOG-mapper	UHGV-1395293_45	903814.ELI_3550	113.0	1.67e-28	Loader and inhibitor of phage G40P	N/A
Pfam	UHGV-1395293_45	PF11417	N/A	N/A	Loader and inhibitor of phage G40P	Inhibitor_G39P
structural_annotation	UHGV-1395293_45	PF11417	N/A	N/A	N/A	N/A
PHROG	UHGV-1395293_46	phrog_14105	188.6	0	N/A	unknown function
UniRef90	UHGV-1395293_46	UniRef90_U2BMS0	295.0	0	Pentapeptide repeat protein	N/A
eggNOG-mapper	UHGV-1395293_46	742740.HMPREF9474_02379	183.0	0	dextransucrase activity	N/A
Pfam	UHGV-1395293_46	PF01469	N/A	N/A	Pentapeptide repeats (8 copies)	Pentapeptide_2
COG	UHGV-1395293_46	COG5263	N/A	N/A	Glucan-binding domain (YG repeat)	N/A
KOfam	UHGV-1395293_48	K00390	70.6	1.9e-21	cysH; phosphoadenosine phosphosulfate reductase [EC:1.8.4.8 1.8.4.10]	N/A
PHROG	UHGV-1395293_48	phrog_424	141.2	6.30024e-42	phosphoadenosine phosphosulfate reductase	moron, auxiliary metabolic gene and host takeover
UniRef90	UHGV-1395293_48	UniRef90_UPI0018A95D39	581.0	0	phosphoadenosine phosphosulfate reductase family protein	N/A
eggNOG-mapper	UHGV-1395293_48	742765.HMPREF9457_03403	400.0	0	Phosphoadenosine phosphosulfate reductase family	N/A
Pfam	UHGV-1395293_48	PF01507	N/A	N/A	Phosphoadenosine phosphosulfate reductase family	PAPS_reduct
COG	UHGV-1395293_48	COG0175	N/A	N/A	3'-phosphoadenosine 5'-phosphosulfate sulfotransferase (PAPS reductase)/FAD synthetase or related enzyme	N/A
structural_annotation	UHGV-1395293_48	PF01507,MF_00063,NF006327,COG0175	N/A	N/A	N/A	N/A
KOfam	UHGV-1395293_50	K00558	188.0	0	DNMT1, dcm; DNA (cytosine-5)-methyltransferase 1 [EC:2.1.1.37]	N/A
PHROG	UHGV-1395293_50	phrog_116	221.5	0	DNA methyltransferase	other
UniRef90	UHGV-1395293_50	UniRef90_A0A373MWF0	766.0	0	DNA (cytosine-5-)-methyltransferase	N/A
eggNOG-mapper	UHGV-1395293_50	742740.HMPREF9474_04317	683.0	0	C-5 cytosine-specific DNA methylase	N/A
PADLOC	UHGV-1395293_50	MTase_II_00020	105.0	1.5e-31	Type II methyltransferase	RM
Pfam	UHGV-1395293_50	PF00145	N/A	N/A	C-5 cytosine-specific DNA methylase	DNA_methylase
COG	UHGV-1395293_50	COG0270	N/A	N/A	DNA-cytosine methylase	N/A
structural_annotation	UHGV-1395293_50	PF00145,MF_00351,TIGR00675,COG0270	N/A	N/A	N/A	N/A
PHROG	UHGV-1395293_53	phrog_424	119.6	2.9e-35	phosphoadenosine phosphosulfate reductase	moron, auxiliary metabolic gene and host takeover
UniRef90	UHGV-1395293_53	UniRef90_A0A373DE70	446.0	0	Phosphoadenosine phosphosulfate reductase	N/A
eggNOG-mapper	UHGV-1395293_53	742733.HMPREF9469_01838	392.0	0	sulfate reduction	N/A
COG	UHGV-1395293_53	COG0175	N/A	N/A	3'-phosphoadenosine 5'-phosphosulfate sulfotransferase (PAPS reductase)/FAD synthetase or related enzyme	N/A
structural_annotation	UHGV-1395293_53	PF01507,MF_00063,TIGR02055,COG0175	N/A	N/A	N/A	N/A
PHROG	UHGV-1395293_56	phrog_9822	56.3	6.4e-16	N/A	unknown function

All viral genomes

ID	Representative?	Length (bps)	% GC Content	CheckV Completeness	geNomad Score
UHGV-1395293	Yes	36,503	41	61	1
UHGV-0042712	No	36,503	41	61	1