vOTU vOTU-110101

vOTU: vOTU-110101

Overview

Genome (FASTA) Annotation Track (GFF) Proteins (FASTA) Protein Annotation (TSV)

Cluster properties
vOTU ID	vOTU-110101
Number of genomes	1
Taxonomy (ICTV)
Taxonomy (UHGV)	vFAM-00006 → vSUBFAM-00007 → vGENUS-00066 → vOTU-110101
Host lineage	Bacteria → Firmicutes_A → Clostridia → Oscillospirales → Ruminococcaceae → Faecalibacterium
Host range breadth	Genus
Lifestyle	temperate (Evidence: BACPHLIP)

Representative genome
Genome ID	UHGV-1880500
Biosample ID	SAMN18819078
Genome length (bp)	39,640 bps
CheckV completeness	68.80% (Medium-quality)
CDS count	56
CDS density	85.64%
tRNA count	1
Integrase	No
Viral confidence	Confident

Host assignment details
Assignment method	CRISPR
CRISPR-predicted host lineage	Bacteria → Firmicutes_A → Clostridia → Oscillospirales → Ruminococcaceae → Faecalibacterium	Total connections	614	Host agreement	96.74
PHIST-predicted host lineage		Total connections		Host agreement

Representative genome content

Select to view: Genome Viewer Functional Annotation

Genome view (completeness: 68.8)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
PHROG	UHGV-1880500_1	phrog_4402	108.3	6.4e-32	replication initiation protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1880500_1	UniRef90_A0A0H5Q331	254.0	0	Rep_3 domain-containing protein	N/A
eggNOG-mapper	UHGV-1880500_1	999413.HMPREF1094_04438	143.0	6.81e-37	Initiator Replication protein	N/A
Pfam	UHGV-1880500_1	PF01051	N/A	N/A	Initiator Replication protein, WH1	Rep3_N
Pfam	UHGV-1880500_1	PF21205	N/A	N/A	Initiator Rep protein, WH2	Rep3_C
COG	UHGV-1880500_1	COG5527	N/A	N/A	Protein involved in initiation of plasmid replication	N/A
structural_annotation	UHGV-1880500_1	PF01051,PF21205,NF010305,COG5527	N/A	N/A	N/A	N/A
Pfam	UHGV-1880500_2	PF04448	N/A	N/A	N/A	DUF551
structural_annotation	UHGV-1880500_2	NF041588	N/A	N/A	N/A	N/A
KOfam	UHGV-1880500_3	K03496	237.8	0	parA, soj; chromosome partitioning protein	N/A
PHROG	UHGV-1880500_3	phrog_164	163.5	0	ParA-like partition protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1880500_3	UniRef90_A0A1C6BS15	206.0	0	Sporulation initiation inhibitor protein soj	N/A
eggNOG-mapper	UHGV-1880500_3	1408423.JHYA01000021_gene392	186.0	0	Cellulose biosynthesis protein BcsQ	N/A
Pfam	UHGV-1880500_3	PF13614	N/A	N/A	AAA domain	AAA_31
COG	UHGV-1880500_3	COG1192	N/A	N/A	ParA-like ATPase involved in chromosome/plasmid partitioning or cellulose biosynthesis protein BcsQ	N/A
structural_annotation	UHGV-1880500_3	PF13614,MF_00533,NF010443,COG1192	N/A	N/A	N/A	N/A
structural_annotation	UHGV-1880500_5	PF07878	N/A	N/A	N/A	N/A
PHROG	UHGV-1880500_7	phrog_7070	113.6	5.6e-34	N/A	unknown function
eggNOG-mapper	UHGV-1880500_7	1195072.M4HPW0_9CAUD	94.0	2.68e-23	N/A	N/A
eggNOG-mapper	UHGV-1880500_8	1415774.U728_858	123.0	3.25e-34	N/A	N/A
eggNOG-mapper	UHGV-1880500_9	1408437.JNJN01000043_gene801	84.7	1.53e-17	N/A	N/A
eggNOG-mapper	UHGV-1880500_10	1408437.JNJN01000043_gene802	116.0	4.25e-32	N/A	N/A
PHROG	UHGV-1880500_11	phrog_16490	100.7	4e-38	N/A	unknown function
eggNOG-mapper	UHGV-1880500_11	1408437.JNJN01000043_gene803	153.0	1.02995e-42	N/A	N/A
KOfam	UHGV-1880500_18	K24213	60.9	1.5e-17	C1QTNF9; complement C1q and tumor necrosis factor-related protein 9	N/A
PHROG	UHGV-1880500_18	phrog_17587	54.2	0.000000000000001	tail fiber protein	tail
UniRef90	UHGV-1880500_18	UniRef90_UPI0018835F0C	559.0	0	collagen-like protein	N/A
eggNOG-mapper	UHGV-1880500_18	411483.FAEPRAA2165_00757	168.0	8.96831e-44	N/A	N/A
Pfam	UHGV-1880500_18	PF01391	N/A	N/A	Collagen triple helix repeat (20 copies)	Collagen
structural_annotation	UHGV-1880500_18	PF10651	N/A	N/A	N/A	N/A
PHROG	UHGV-1880500_19	phrog_15303	113.4	1.1e-33	N/A	unknown function
Pfam	UHGV-1880500_19	PF09682	N/A	N/A	Bacteriophage holin of superfamily 6 (Holin_LLH)	Phage_holin_6_1
KOfam	UHGV-1880500_21	K07273	167.0	0	acm; lysozyme	N/A
PHROG	UHGV-1880500_21	phrog_291	115.2	7e-34	endolysin	lysis
UniRef90	UHGV-1880500_21	UniRef90_A0A564U0D3	417.0	0	Autolytic lysozyme	N/A
eggNOG-mapper	UHGV-1880500_21	718252.FP2_04890	256.0	0	hydrolase, family 25	N/A
Pfam	UHGV-1880500_21	PF01183	N/A	N/A	Glycosyl hydrolases family 25	Glyco_hydro_25
COG	UHGV-1880500_21	COG3757	N/A	N/A	Lyzozyme M1 (1,4-beta-N-acetylmuramidase), GH25 family	N/A
structural_annotation	UHGV-1880500_21	PF01183,NF007404,COG3757	N/A	N/A	N/A	N/A
PHROG	UHGV-1880500_22	phrog_1382	52.9	0.0000000000000029	N/A	unknown function
eggNOG-mapper	UHGV-1880500_22	33035.JPJF01000043_gene998	48.1	0.000000514	N/A	N/A
PHROG	UHGV-1880500_24	phrog_9534	51.4	0.000000000000017	head protein	head and packaging
eggNOG-mapper	UHGV-1880500_24	748224.HMPREF9436_00405	168.0	1.4013e-45	domain, Protein	N/A
COG	UHGV-1880500_24	COG5492	N/A	N/A	N/A	N/A
PHROG	UHGV-1880500_25	phrog_18725	69.2	6.5e-20	N/A	unknown function
eggNOG-mapper	UHGV-1880500_25	1226322.HMPREF1545_00062	80.5	5.74e-17	N/A	N/A
PHROG	UHGV-1880500_26	phrog_13879	228.2	0	N/A	unknown function
eggNOG-mapper	UHGV-1880500_26	1122919.KB905559_gene1344	158.0	2.38e-38	N/A	N/A
Pfam	UHGV-1880500_26	PF19789	N/A	N/A	N/A	DUF6273
structural_annotation	UHGV-1880500_26	PF14594,PF19789,PF03256,PF09134,NF033848,COG3500,COG5156	N/A	N/A	N/A	N/A
PHROG	UHGV-1880500_27	phrog_1194	82.9	3.4e-24	N/A	unknown function
eggNOG-mapper	UHGV-1880500_27	665956.HMPREF1032_03629	56.2	0.0000000285	N/A	N/A
Pfam	UHGV-1880500_27	PF20458	N/A	N/A	N/A	DUF6711
structural_annotation	UHGV-1880500_27	PF20458,TIGR02126,COG3499	N/A	N/A	N/A	N/A
PHROG	UHGV-1880500_28	phrog_1535	141.0	0	tail length tape measure protein	tail
eggNOG-mapper	UHGV-1880500_28	1121866.AUGK01000003_gene1437	194.0	0	phage tail tape measure protein	N/A
COG	UHGV-1880500_28	COG1280	N/A	N/A	Threonine/homoserine/homoserine lactone efflux protein	N/A
eggNOG-mapper	UHGV-1880500_29	1121333.JMLH01000047_gene1011	77.0	3.89e-16	N/A	N/A
UniRef90	UHGV-1880500_30	UniRef90_A0A847YX95	70.9	0.000000000000144	N/A	N/A
eggNOG-mapper	UHGV-1880500_30	1123263.AUKY01000015_gene1618	62.8	0.0000000000345	N/A	N/A
Pfam	UHGV-1880500_30	PF16478	N/A	N/A	N/A	DUF5055
structural_annotation	UHGV-1880500_30	PF16478	N/A	N/A	N/A	N/A
PHROG	UHGV-1880500_31	phrog_158	45.9	0.000000000001	major tail protein	tail
UniRef90	UHGV-1880500_31	UniRef90_UPI001D087591	115.0	2.49e-30	phage tail protein	N/A
eggNOG-mapper	UHGV-1880500_31	1449343.JQLQ01000002_gene1514	54.7	0.000000287	Phage tail tube protein, TTP	N/A
structural_annotation	UHGV-1880500_31	PF16463,TIGR02241,COG5437	N/A	N/A	N/A	N/A
structural_annotation	UHGV-1880500_32	PF06141,TIGR02367,COG3167	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-1880500_34	1298920.KI911353_gene2656	55.5	0.0000000562	N/A	N/A
structural_annotation	UHGV-1880500_34	PF19586,TIGR01563,COG5614	N/A	N/A	N/A	N/A
UniRef90	UHGV-1880500_35	UniRef90_R6N215	81.6	7.46e-18	Phage QLRG family putative DNA packaging	N/A
structural_annotation	UHGV-1880500_35	TIGR01560	N/A	N/A	N/A	N/A
PHROG	UHGV-1880500_36	phrog_29	179.7	0	major head protein	head and packaging
UniRef90	UHGV-1880500_36	UniRef90_A0A2Z4QBB4	373.0	0	Major capsid protein E	N/A
eggNOG-mapper	UHGV-1880500_36	476272.RUMHYD_01946	258.0	0	Phage major capsid protein E	N/A
Pfam	UHGV-1880500_36	PF03864	N/A	N/A	Phage major capsid protein E	Phage_cap_E
structural_annotation	UHGV-1880500_36	PF03864,MF_04133,NF041162,COG4653	N/A	N/A	N/A	N/A
PHROG	UHGV-1880500_37	phrog_909	40.5	0.00000000004	major head protein	head and packaging
UniRef90	UHGV-1880500_39	UniRef90_UPI0011072322	70.9	0.000000000000178	N/A	N/A
eggNOG-mapper	UHGV-1880500_39	397290.C810_05229	68.6	0.000000000000251	N/A	N/A
structural_annotation	UHGV-1880500_39	PF14359,NF040588,COG3613	N/A	N/A	N/A	N/A
PHROG	UHGV-1880500_40	phrog_64	145.7	2.49431e-43	portal protein	head and packaging
UniRef90	UHGV-1880500_40	UniRef90_A0A371ILT4	328.0	0	Phage portal protein	N/A
eggNOG-mapper	UHGV-1880500_40	1121866.AUGK01000003_gene1429	274.0	0	Phage portal protein, SPP1 Gp6-like	N/A
Pfam	UHGV-1880500_40	PF05133	N/A	N/A	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
structural_annotation	UHGV-1880500_40	PF05133,MF_04120,TIGR01538,COG5511	N/A	N/A	N/A	N/A
PHROG	UHGV-1880500_42	phrog_38	177.4	0	terminase large subunit	head and packaging
UniRef90	UHGV-1880500_42	UniRef90_UPI000419A6BC	422.0	0	phage terminase large subunit	N/A
eggNOG-mapper	UHGV-1880500_42	1121866.AUGK01000003_gene1428	422.0	0	chromosome segregation	N/A
COG	UHGV-1880500_42	COG5410	N/A	N/A	N/A	N/A
structural_annotation	UHGV-1880500_42	PF17289,PF02562,MF_04147,NF033889,COG5362,COG5410	N/A	N/A	N/A	N/A
structural_annotation	UHGV-1880500_45	NF009949	N/A	N/A	N/A	N/A
KOfam	UHGV-1880500_46	K14060	97.2	2.3e-28	pinR; putative DNA-invertase from lambdoid prophage Rac	N/A
PHROG	UHGV-1880500_46	phrog_125	130.3	1.5e-38	DNA invertase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1880500_46	UniRef90_UPI001A9B5A42	241.0	0	recombinase family protein	N/A
eggNOG-mapper	UHGV-1880500_46	1443122.Z958_05795	156.0	2.8026e-45	Resolvase, N terminal domain	N/A
Pfam	UHGV-1880500_46	PF00239	N/A	N/A	Resolvase, N terminal domain	Resolvase
COG	UHGV-1880500_46	COG1961	N/A	N/A	Site-specific DNA recombinase SpoIVCA/DNA invertase PinE	N/A
structural_annotation	UHGV-1880500_46	PF00239,PF02796,NF009949,COG1961	N/A	N/A	N/A	N/A
UniRef90	UHGV-1880500_47	UniRef90_A0A417DZ16	52.4	0.000000241	HTH cro/C1-type domain-containing protein	N/A
structural_annotation	UHGV-1880500_47	PF20075,TIGR02612,COG1396	N/A	N/A	N/A	N/A
structural_annotation	UHGV-1880500_49	PF19807,NF041793,COG4877	N/A	N/A	N/A	N/A
KOfam	UHGV-1880500_50	K07741	80.4	2.9e-23	antB; anti-repressor protein	N/A
PHROG	UHGV-1880500_50	phrog_373	127.2	1.5e-37	anti-repressor	transcription regulation
UniRef90	UHGV-1880500_50	UniRef90_UPI001C039A6C	171.0	0	ORF6C domain-containing protein	N/A
eggNOG-mapper	UHGV-1880500_50	1567013.A0A0A7RVQ9_9CAUD	140.0	4.1e-38	AntA/AntB antirepressor	N/A
Pfam	UHGV-1880500_50	PF08346	N/A	N/A	AntA/AntB antirepressor	AntA
Pfam	UHGV-1880500_50	PF10552	N/A	N/A	ORF6C domain	ORF6C
structural_annotation	UHGV-1880500_50	PF10552,PF08346,TIGR02681,COG3561	N/A	N/A	N/A	N/A
NCBIFam	UHGV-1880500_52	NF038353.1	N/A	N/A	FxLYD domain-containing protein	N/A
COG	UHGV-1880500_52	COG0515	N/A	N/A	Serine/threonine protein kinase	N/A
structural_annotation	UHGV-1880500_52	PF09624,PF14263,MF_00791,NF038353,TIGR02588,COG4885	N/A	N/A	N/A	N/A
PHROG	UHGV-1880500_55	phrog_15551	88.8	4.1e-26	N/A	unknown function
UniRef90	UHGV-1880500_55	UniRef90_E1A234	84.7	7.3e-20	LPD11 domain-containing protein	N/A
eggNOG-mapper	UHGV-1880500_55	1226322.HMPREF1545_03227	87.0	6.06e-19	SNF2 family N-terminal domain	N/A
Pfam	UHGV-1880500_55	PF18824	N/A	N/A	Large polyvalent protein-associated domain 11	LPD11
COG	UHGV-1880500_55	COG0249	N/A	N/A	DNA mismatch repair ATPase MutS	N/A
structural_annotation	UHGV-1880500_55	PF18824	N/A	N/A	N/A	N/A
PHROG	UHGV-1880500_56	phrog_434	45.4	0.0000000000014	RecE-like recombination exonuclease	DNA, RNA and nucleotide metabolism
eggNOG-mapper	UHGV-1880500_56	742738.HMPREF9460_00717	48.9	0.00000238	YqaJ viral recombinase family	N/A
COG	UHGV-1880500_56	COG5377	N/A	N/A	Phage-related protein, predicted endonuclease	N/A

All viral genomes

ID	Representative?	Length (bps)	% GC Content	CheckV Completeness	geNomad Score
UHGV-1880500	Yes	39,640	49	69	1