vOTU vOTU-110331

vOTU: vOTU-110331

Overview

Genome (FASTA) Annotation Track (GFF) Proteins (FASTA) Protein Annotation (TSV)

Cluster properties
vOTU ID	vOTU-110331
Number of genomes	1
Taxonomy (ICTV)	Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes
Taxonomy (UHGV)	vFAM-00004 → vSUBFAM-00367 → vOTU-110331
Host lineage	Bacteria → Firmicutes_A → Clostridia → Oscillospirales → Oscillospiraceae → Dysosmobacter → Dysosmobacter welbionis
Host range breadth	Species
Lifestyle	temperate (evidence: integrase)

Representative genome
Genome ID	UHGV-0037029
Biosample ID	N/A
Genome length (bp)	27,088 bps
CheckV completeness	59.22% (Medium-quality)
CDS count	55
CDS density	83.88%
tRNA count	0
Integrase	Yes
Viral confidence	Confident

Host assignment details
Assignment method	CRISPR
CRISPR-predicted host lineage	Bacteria → Firmicutes_A → Clostridia → Oscillospirales → Oscillospiraceae → Dysosmobacter → Dysosmobacter welbionis	Total connections	72	Host agreement	76.39
PHIST-predicted host lineage	Bacteria → Firmicutes_A → Clostridia → Oscillospirales → Oscillospiraceae → Lawsonibacter → Lawsonibacter sp900066645	Total connections	4	Host agreement	75

Representative genome content

Select to view: Genome Viewer Functional Annotation

Genome view (completeness: 59.22)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
PHROG	UHGV-0037029_4	phrog_937	54.8	0.0000000000000016	hemolysin	other
eggNOG-mapper	UHGV-0037029_4	428125.CLOLEP_00170	61.2	0.000000000164	N/A	N/A
PHROG	UHGV-0037029_5	phrog_1129	68.3	8e-20	holin	lysis
UniRef90	UHGV-0037029_5	UniRef90_A0A416QZD1	125.0	5.03e-36	Enolase	N/A
eggNOG-mapper	UHGV-0037029_5	1007096.BAGW01000036_gene2663	124.0	4.22e-36	Phage holin family Hol44, in holin superfamily V	N/A
Pfam	UHGV-0037029_5	PF16079	N/A	N/A	Phage holin family Hol44, in holin superfamily V	Phage_holin_5_2
structural_annotation	UHGV-0037029_5	PF06946	N/A	N/A	N/A	N/A
KOfam	UHGV-0037029_7	K01448	131.9	5.8e-39	amiABC; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]	N/A
PHROG	UHGV-0037029_7	phrog_435	136.9	1.8e-40	endolysin	lysis
UniRef90	UHGV-0037029_7	UniRef90_A0A1C6B3W5	419.0	0	Sporulation-specific N-acetylmuramoyl-L-alanine amidase	N/A
eggNOG-mapper	UHGV-0037029_7	1410668.JNKC01000001_gene1675	149.0	3.25998e-41	N-Acetylmuramoyl-L-alanine amidase	N/A
Pfam	UHGV-0037029_7	PF01520	N/A	N/A	N-acetylmuramoyl-L-alanine amidase	Amidase_3
COG	UHGV-0037029_7	COG0860	N/A	N/A	N-acetylmuramoyl-L-alanine amidase	N/A
structural_annotation	UHGV-0037029_7	PF01520,MF_00562,TIGR02883,COG0860	N/A	N/A	N/A	N/A
KOfam	UHGV-0037029_8	K14059	108.6	1e-31	int; integrase	N/A
PHROG	UHGV-0037029_8	phrog_1	135.4	5.30001e-40	integrase	integration and excision
UniRef90	UHGV-0037029_8	UniRef90_UPI00195CC1EE	607.0	0	tyrosine-type recombinase/integrase	N/A
eggNOG-mapper	UHGV-0037029_8	1235835.C814_03141	209.0	0	Belongs to the 'phage' integrase family	N/A
Pfam	UHGV-0037029_8	PF00589	N/A	N/A	Phage integrase family	Phage_integrase
COG	UHGV-0037029_8	COG0582	N/A	N/A	Integrase/recombinase, includes phage integrase	N/A
structural_annotation	UHGV-0037029_8	PF00589,MF_01807,TIGR02224,COG4973	N/A	N/A	N/A	N/A
PHROG	UHGV-0037029_9	phrog_7115	151.2	2.8026e-45	N/A	unknown function
UniRef90	UHGV-0037029_9	UniRef90_G9YSE2	269.0	0	bPH_1 domain-containing protein	N/A
eggNOG-mapper	UHGV-0037029_9	1121344.JHZO01000003_gene733	239.0	0	Bacterial PH domain	N/A
Pfam	UHGV-0037029_9	PF08000	N/A	N/A	Bacterial PH domain	bPH_1
structural_annotation	UHGV-0037029_9	PF08000,COG3402	N/A	N/A	N/A	N/A
PHROG	UHGV-0037029_10	phrog_2657	160.7	0	transcriptional regulator	transcription regulation
UniRef90	UHGV-0037029_10	UniRef90_A0A1C6B9J9	534.0	0	KilA-N domain	N/A
eggNOG-mapper	UHGV-0037029_10	428125.CLOLEP_01836	427.0	0	COG NOG08824 non supervised orthologous group	N/A
Pfam	UHGV-0037029_10	PF04383	N/A	N/A	KilA-N domain	KilA-N
structural_annotation	UHGV-0037029_10	PF04383,NF033622,COG3943	N/A	N/A	N/A	N/A
PHROG	UHGV-0037029_11	phrog_33872	55.2	3.9e-22	N/A	unknown function
eggNOG-mapper	UHGV-0037029_11	693746.OBV_19740	49.3	0.00000317	N/A	N/A
PHROG	UHGV-0037029_13	phrog_87	56.8	3.5e-16	metallo-protease	other
UniRef90	UHGV-0037029_13	UniRef90_UPI001D02ABB3	254.0	0	ImmA/IrrE family metallo-endopeptidase	N/A
eggNOG-mapper	UHGV-0037029_13	1007096.BAGW01000011_gene2354	128.0	4.46e-36	IrrE N-terminal-like domain	N/A
Pfam	UHGV-0037029_13	PF06114	N/A	N/A	IrrE N-terminal-like domain	Peptidase_M78
COG	UHGV-0037029_13	COG2856	N/A	N/A	Zn-dependent peptidase ImmA, M78 family	N/A
structural_annotation	UHGV-0037029_13	PF06114,COG2856	N/A	N/A	N/A	N/A
UniRef90	UHGV-0037029_14	UniRef90_UPI001897E58E	144.0	1.70958e-42	helix-turn-helix transcriptional regulator	N/A
eggNOG-mapper	UHGV-0037029_14	742738.HMPREF9460_02485	88.6	4.54e-21	Helix-turn-helix XRE-family like proteins	N/A
Pfam	UHGV-0037029_14	PF13443	N/A	N/A	Cro/C1-type HTH DNA-binding domain	HTH_26
COG	UHGV-0037029_14	COG1476	N/A	N/A	DNA-binding transcriptional regulator, XRE-family HTH domain	N/A
structural_annotation	UHGV-0037029_14	PF12844,NF041951,COG1396	N/A	N/A	N/A	N/A
UniRef90	UHGV-0037029_15	UniRef90_G9YWB8	102.0	3.85e-27	Toxin-antitoxin system, antitoxin component, Xre family	N/A
eggNOG-mapper	UHGV-0037029_15	742738.HMPREF9460_02486	102.0	6.45e-28	N/A	N/A
structural_annotation	UHGV-0037029_15	TIGR03070	N/A	N/A	N/A	N/A
UniRef90	UHGV-0037029_17	UniRef90_UPI000F0633F9	87.0	3.73e-21	DNA-binding protein	N/A
eggNOG-mapper	UHGV-0037029_17	693746.OBV_43260	78.2	2.06e-18	N/A	N/A
structural_annotation	UHGV-0037029_17	PF12728,TIGR01764,COG3311	N/A	N/A	N/A	N/A
KOfam	UHGV-0037029_20	K15773	41.1	0.000000000033	hipB; HTH-type transcriptional regulator / antitoxin HipB	N/A
PHROG	UHGV-0037029_20	phrog_3	42.3	0.000000000031	transcriptional repressor	transcription regulation
UniRef90	UHGV-0037029_20	UniRef90_UPI0012DE0A5F	104.0	3.48e-28	helix-turn-helix transcriptional regulator	N/A
Pfam	UHGV-0037029_20	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
COG	UHGV-0037029_20	COG1396	N/A	N/A	Transcriptional regulator, contains XRE-family HTH domain	N/A
structural_annotation	UHGV-0037029_20	PF01381,NF041951,COG1476	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0037029_23	PF13560	N/A	N/A	N/A	N/A
PHROG	UHGV-0037029_25	phrog_5070	192.3	0	N/A	unknown function
UniRef90	UHGV-0037029_25	UniRef90_B0PAM0	122.0	1.65e-31	Bacterial transferase hexapeptide repeat protein	N/A
eggNOG-mapper	UHGV-0037029_25	445972.ANACOL_01820	122.0	2.77e-32	COG NOG06285 non supervised orthologous group	N/A
Pfam	UHGV-0037029_25	PF18836	N/A	N/A	YdcK Beta solenoid repeat	B_solenoid_ydck
COG	UHGV-0037029_25	COG1044	N/A	N/A	UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase	N/A
structural_annotation	UHGV-0037029_25	NF040481	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0037029_27	PF09943	N/A	N/A	N/A	N/A
PHROG	UHGV-0037029_28	phrog_155	143.5	1.49939e-42	Erf-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0037029_28	UniRef90_UPI001C126E67	229.0	0	ERF family protein	N/A
eggNOG-mapper	UHGV-0037029_28	97138.C820_00777	167.0	0	ERF superfamily	N/A
Pfam	UHGV-0037029_28	PF04404	N/A	N/A	ERF superfamily	ERF
structural_annotation	UHGV-0037029_28	PF04404,COG4712	N/A	N/A	N/A	N/A
PHROG	UHGV-0037029_29	phrog_72	65.1	8e-19	NinB/ Orf homologous recombination mediator	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0037029_29	UniRef90_UPI001F3F3E5C	190.0	0	recombination protein NinB	N/A
eggNOG-mapper	UHGV-0037029_29	445972.ANACOL_01825	138.0	3.49e-39	N/A	N/A
structural_annotation	UHGV-0037029_29	PF05772	N/A	N/A	N/A	N/A
PHROG	UHGV-0037029_30	phrog_7370	52.6	0.0000000000000075	HNH endonuclease	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0037029_30	UniRef90_A0A2Z4QA94	163.0	0	Recombination protein	N/A
eggNOG-mapper	UHGV-0037029_30	445972.ANACOL_01826	67.0	0.000000000000682	HNH nucleases	N/A
Pfam	UHGV-0037029_30	PF13391	N/A	N/A	HNH endonuclease	HNH_2
PHROG	UHGV-0037029_31	phrog_4973	58.0	1.6e-16	N/A	unknown function
UniRef90	UHGV-0037029_31	UniRef90_UPI00164C43FE	84.7	4.17e-20	helix-turn-helix domain-containing protein	N/A
eggNOG-mapper	UHGV-0037029_31	1072685.IX83_07155	51.2	0.000000101	Helix-turn-helix domain	N/A
Pfam	UHGV-0037029_31	PF14090	N/A	N/A	Helix-turn-helix domain	HTH_39
structural_annotation	UHGV-0037029_31	PF14090,NF040939,COG4738	N/A	N/A	N/A	N/A
KOfam	UHGV-0037029_32	K03111	153.2	2.8026e-45	ssb; single-strand DNA-binding protein	N/A
PHROG	UHGV-0037029_32	phrog_44	154.3	0	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0037029_32	UniRef90_A0A1C6B8W9	287.0	0	Single-stranded DNA-binding protein	N/A
eggNOG-mapper	UHGV-0037029_32	1378168.N510_01674	201.0	0	Plays an important role in DNA replication, recombination and repair. Binds to ssDNA and to an array of partner proteins to recruit them to their sites of action during DNA metabolism	N/A
Pfam	UHGV-0037029_32	PF00436	N/A	N/A	Single-strand binding protein family	SSB
NCBIFam	UHGV-0037029_32	TIGR00621.2	N/A	N/A	single-stranded DNA-binding protein	N/A
COG	UHGV-0037029_32	COG0629	N/A	N/A	Single-stranded DNA-binding protein	N/A
HAMAP	UHGV-0037029_32	MF_00984	N/A	N/A	Single-stranded DNA-binding protein	N/A
structural_annotation	UHGV-0037029_32	PF00436,MF_00984,NF005241,COG0629	N/A	N/A	N/A	N/A
PHROG	UHGV-0037029_33	phrog_186	48.0	0.0000000000002	DnaD-like helicase loader	DNA, RNA and nucleotide metabolism
NCBIFam	UHGV-0037029_33	TIGR01446.1	N/A	N/A	DnaD domain protein	N/A
KOfam	UHGV-0037029_34	K17680	176.9	0	PEO1; twinkle protein [EC:5.6.2.3]	N/A
PHROG	UHGV-0037029_34	phrog_239	155.2	0	DNA primase/helicase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0037029_34	UniRef90_A0A1C5N602	852.0	0	DNA repair protein RadA	N/A
eggNOG-mapper	UHGV-0037029_34	1378168.N510_01441	528.0	0	N/A	N/A
Pfam	UHGV-0037029_34	PF03796	N/A	N/A	DnaB-like helicase C terminal domain	DnaB_C
COG	UHGV-0037029_34	COG0305	N/A	N/A	Replicative DNA helicase	N/A
structural_annotation	UHGV-0037029_34	PF03796,MF_04154,NF006606,COG0467	N/A	N/A	N/A	N/A
KOfam	UHGV-0037029_36	K01160	52.5	0.000000000000013	rusA; crossover junction endodeoxyribonuclease RusA [EC:3.1.21.10]	N/A
PHROG	UHGV-0037029_36	phrog_1682	71.9	1.1e-20	RusA-like Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0037029_36	UniRef90_A0A1C5N534	241.0	0	Endodeoxyribonuclease RusA	N/A
eggNOG-mapper	UHGV-0037029_36	1235790.C805_00029	139.0	4.14e-41	Endonuclease that resolves Holliday junction intermediates made during homologous genetic recombination and DNA repair. Exhibits sequence and structure-selective cleavage of four-way DNA junctions, where it introduces symmetrical nicks in two strands of the same polarity at the 5' side of dinucleotides. Corrects the defects in genetic recombination and DNA repair associated with inactivation of ruvAB or ruvC	N/A
COG	UHGV-0037029_36	COG4570	N/A	N/A	Holliday junction resolvase RusA (prophage-encoded endonuclease)	N/A
structural_annotation	UHGV-0037029_36	PF19595,NF007305,COG4570	N/A	N/A	N/A	N/A
PHROG	UHGV-0037029_37	phrog_757	189.0	0	DNA methyltransferase	other
UniRef90	UHGV-0037029_37	UniRef90_UPI000F0668EB	224.0	0	DNA cytosine methyltransferase	N/A
eggNOG-mapper	UHGV-0037029_37	397290.C810_01487	235.0	0	DNA (cytosine-5-)-methyltransferase activity	N/A
COG	UHGV-0037029_37	COG0270	N/A	N/A	DNA-cytosine methylase	N/A
structural_annotation	UHGV-0037029_37	PF00145,MF_01872,TIGR00675,COG0270	N/A	N/A	N/A	N/A
PHROG	UHGV-0037029_38	phrog_599	41.1	0.000000000022	Lar-like restriction alleviation protein	moron, auxiliary metabolic gene and host takeover
UniRef90	UHGV-0037029_38	UniRef90_A0A4D7ANR2	77.8	5.09e-16	Lar family restriction alleviation protein	N/A
eggNOG-mapper	UHGV-0037029_38	742738.HMPREF9460_04054	67.0	0.00000000000126	Restriction alleviation protein Lar	N/A
Pfam	UHGV-0037029_38	PF14354	N/A	N/A	Restriction alleviation protein Lar	Lar_restr_allev
PHROG	UHGV-0037029_39	phrog_757	113.5	1.5e-33	DNA methyltransferase	other
UniRef90	UHGV-0037029_39	UniRef90_A0A8D9PDD1	364.0	0	DNA (Cytosine 5) methyltransferase	N/A
eggNOG-mapper	UHGV-0037029_39	622312.ROSEINA2194_01264	337.0	0	C-5 cytosine-specific DNA methylase	N/A
COG	UHGV-0037029_39	COG0270	N/A	N/A	DNA-cytosine methylase	N/A
structural_annotation	UHGV-0037029_39	PF00145,TIGR00675,COG0270	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0037029_40	742738.HMPREF9460_04055	133.0	1.4e-39	N/A	N/A
PHROG	UHGV-0037029_43	phrog_37865	52.1	0.000000000000001	N/A	unknown function
PHROG	UHGV-0037029_44	phrog_22543	50.7	0.0000000000000049	N/A	unknown function
PHROG	UHGV-0037029_48	phrog_801	91.6	1.1e-26	endolysin; inhibits RNA polymerase	lysis
UniRef90	UHGV-0037029_48	UniRef90_A0A1C6IRL8	253.0	0	N/A	N/A
eggNOG-mapper	UHGV-0037029_48	1244856.K4PY83_9CAUD	73.2	0.0000000000000256	Cytidine and deoxycytidylate deaminase zinc-binding region	N/A
Pfam	UHGV-0037029_48	PF18909	N/A	N/A	dATP/dGTP diphosphohydrolase, N-terminal	dGTP_diPhyd_N
structural_annotation	UHGV-0037029_48	PF18909	N/A	N/A	N/A	N/A
UniRef90	UHGV-0037029_50	UniRef90_A0A1C6IRM5	157.0	0	Transposase	N/A
Pfam	UHGV-0037029_50	PF01527	N/A	N/A	Transposase	HTH_Tnp_1
COG	UHGV-0037029_50	COG2963	N/A	N/A	Transposase InsE and inactivated derivatives	N/A
PHROG	UHGV-0037029_51	phrog_8	58.1	2.2e-16	transcriptional regulator	transcription regulation
UniRef90	UHGV-0037029_51	UniRef90_UPI001899C2C3	132.0	3.43e-39	helix-turn-helix domain-containing protein	N/A
eggNOG-mapper	UHGV-0037029_51	1235797.C816_02037	67.8	0.000000000000789	sequence-specific DNA binding	N/A
Pfam	UHGV-0037029_51	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
COG	UHGV-0037029_51	COG1396	N/A	N/A	Transcriptional regulator, contains XRE-family HTH domain	N/A
structural_annotation	UHGV-0037029_51	PF01381,MF_00535,NF041951,COG1396	N/A	N/A	N/A	N/A
PHROG	UHGV-0037029_52	phrog_130	171.9	0	anti-repressor Ant	transcription regulation
UniRef90	UHGV-0037029_52	UniRef90_A0A1V0QCE9	351.0	0	Bro-N domain-containing protein	N/A
eggNOG-mapper	UHGV-0037029_52	573061.Clocel_3580	181.0	0	Phage antirepressor protein	N/A
Pfam	UHGV-0037029_52	PF02498	N/A	N/A	BRO family, N-terminal domain	Bro-N
COG	UHGV-0037029_52	COG3617	N/A	N/A	Prophage antirepressor	N/A
structural_annotation	UHGV-0037029_52	PF02498,TIGR02681,COG3617	N/A	N/A	N/A	N/A
PHROG	UHGV-0037029_53	phrog_309	183.4	0	terminase small subunit	head and packaging
UniRef90	UHGV-0037029_53	UniRef90_UPI001D01EB7C	240.0	0	helix-turn-helix domain-containing protein	N/A
eggNOG-mapper	UHGV-0037029_53	1408437.JNJN01000045_gene597	197.0	0	HNH endonuclease	N/A
Pfam	UHGV-0037029_53	PF01527	N/A	N/A	Transposase	HTH_Tnp_1
COG	UHGV-0037029_53	COG2963	N/A	N/A	Transposase InsE and inactivated derivatives	N/A
structural_annotation	UHGV-0037029_53	PF07141	N/A	N/A	N/A	N/A
KOfam	UHGV-0037029_54	K06909	381.8	0	xtmB; phage terminase large subunit	N/A
PHROG	UHGV-0037029_54	phrog_5653	157.6	0	terminase large subunit	head and packaging
UniRef90	UHGV-0037029_54	UniRef90_A0A2U1BEH4	824.0	0	PBSX family phage terminase large subunit	N/A
eggNOG-mapper	UHGV-0037029_54	33035.JPJF01000106_gene3136	461.0	0	Terminase small subunit	N/A
Pfam	UHGV-0037029_54	PF04466	N/A	N/A	Phage terminase large subunit	Terminase_3
Pfam	UHGV-0037029_54	PF17288	N/A	N/A	Terminase RNAseH like domain	Terminase_3C
NCBIFam	UHGV-0037029_54	TIGR01547.1	N/A	N/A	PBSX family phage terminase large subunit	N/A
COG	UHGV-0037029_54	COG1783	N/A	N/A	Phage terminase large subunit	N/A
structural_annotation	UHGV-0037029_54	PF04466,PF17288,MF_04145,TIGR01547,COG1783	N/A	N/A	N/A	N/A

All viral genomes

ID	Representative?	Length (bps)	% GC Content	CheckV Completeness	geNomad Score
UHGV-0037029	Yes	27,088	50	59	1