vOTU vOTU-110473

vOTU: vOTU-110473

Overview

Genome (FASTA) Annotation Track (GFF) Proteins (FASTA) Protein Annotation (TSV)

Cluster properties
vOTU ID	vOTU-110473
Number of genomes	1
Taxonomy (ICTV)	Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes
Taxonomy (UHGV)	vFAM-00022 → vSUBFAM-00313 → vGENUS-00344 → vOTU-110473
Host lineage	Bacteria → Firmicutes_A → Clostridia → Oscillospirales → Ruminococcaceae → Gemmiger
Host range breadth	Genus
Lifestyle	temperate (evidence: BACPHLIP)

Representative genome
Genome ID	UHGV-1466044
Biosample ID	SAMEA2338639
Genome length (bp)	21,213 bps
CheckV completeness	64.45% (Medium-quality)
CDS count	26
CDS density	94.80%
tRNA count	0
Integrase	No
Viral confidence	Confident

Host assignment details
Assignment method	PHIST
CRISPR-predicted host lineage	Bacteria → Firmicutes_A → Clostridia → Oscillospirales → Ruminococcaceae → Gemmiger → Gemmiger formicilis	Total connections	80	Host agreement	83.75
PHIST-predicted host lineage	Bacteria → Firmicutes_A → Clostridia → Oscillospirales → Ruminococcaceae → Gemmiger	Total connections	118	Host agreement	99.15

Representative genome content

Select to view: Genome Viewer Functional Annotation

Genome view (completeness: 64.45)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
structural_annotation	UHGV-1466044_2	PF18614,MF_00085,NF003082,COG0361	N/A	N/A	N/A	N/A
PHROG	UHGV-1466044_3	phrog_26795	86.0	2.2e-25	N/A	unknown function
eggNOG-mapper	UHGV-1466044_3	742740.HMPREF9474_04294	121.0	1.51e-28	N/A	N/A
structural_annotation	UHGV-1466044_3	PF14594,NF033848,COG4379	N/A	N/A	N/A	N/A
UniRef90	UHGV-1466044_4	UniRef90_A0A3D0W045	222.0	0	Fibronectin type-III domain-containing protein	N/A
eggNOG-mapper	UHGV-1466044_4	1161901.I1TLF2_9CAUD	77.4	0.0000000000149	N/A	N/A
structural_annotation	UHGV-1466044_4	PF02010,PF06995,MF_04116,NF010681,COG3401,COG3499	N/A	N/A	N/A	N/A
PHROG	UHGV-1466044_5	phrog_8462	121.7	6.6e-38	tail length tape measure protein	tail
UniRef90	UHGV-1466044_5	UniRef90_A0A174XMM8	261.0	0	Tail tape measure protein TP901 core region	N/A
eggNOG-mapper	UHGV-1466044_5	1195236.CTER_5104	281.0	0	nuclear chromosome segregation	N/A
COG	UHGV-1466044_5	COG5283	N/A	N/A	Phage-related tail protein	N/A
structural_annotation	UHGV-1466044_5	TIGR01760,COG5280	N/A	N/A	N/A	N/A
structural_annotation	UHGV-1466044_6	PF12363	N/A	N/A	N/A	N/A
PHROG	UHGV-1466044_7	phrog_88	42.2	0.000000000012	major tail protein	tail
structural_annotation	UHGV-1466044_7	PF06488,TIGR01603	N/A	N/A	N/A	N/A
PHROG	UHGV-1466044_9	phrog_5	47.8	0.00000000000031	tail completion or Neck1 protein	connector
UniRef90	UHGV-1466044_9	UniRef90_UPI000684DFDC	60.5	0.00000000782	HK97 gp10 family phage protein	N/A
eggNOG-mapper	UHGV-1466044_9	1195236.CTER_5108	81.3	1.04e-17	Phage protein, HK97 gp10 family	N/A
NCBIFam	UHGV-1466044_9	TIGR01725.1	N/A	N/A	HK97-gp10 family putative phage morphogenesis protein	N/A
structural_annotation	UHGV-1466044_9	TIGR01725	N/A	N/A	N/A	N/A
PHROG	UHGV-1466044_10	phrog_1951	67.4	1.7e-19	head-tail adaptor	connector
UniRef90	UHGV-1466044_10	UniRef90_UPI00195B41A2	155.0	0	phage head closure protein	N/A
eggNOG-mapper	UHGV-1466044_10	411470.RUMGNA_02070	67.0	0.000000000000509	N/A	N/A
NCBIFam	UHGV-1466044_10	TIGR01563.1	N/A	N/A	phage head closure protein	N/A
structural_annotation	UHGV-1466044_10	PF05521,TIGR01563,COG5614	N/A	N/A	N/A	N/A
PHROG	UHGV-1466044_11	phrog_5223	72.8	3e-21	neck protein	connector
UniRef90	UHGV-1466044_11	UniRef90_UPI00195CBB4A	140.0	1.46996e-41	DNA-packaging protein	N/A
eggNOG-mapper	UHGV-1466044_11	411471.SUBVAR_05853	93.6	1.17e-23	N/A	N/A
PHROG	UHGV-1466044_12	phrog_10	60.3	2.7e-17	major head protein	head and packaging
UniRef90	UHGV-1466044_12	UniRef90_A0A1C5W5F9	443.0	0	Phage major capsid protein, HK97 family	N/A
eggNOG-mapper	UHGV-1466044_12	742740.HMPREF9474_04304	390.0	0	Phage capsid family	N/A
Pfam	UHGV-1466044_12	PF05065	N/A	N/A	Phage capsid family	Phage_capsid
NCBIFam	UHGV-1466044_12	TIGR01554.2	N/A	N/A	phage major capsid protein	N/A
structural_annotation	UHGV-1466044_12	PF05065,PF09032,MF_04119,TIGR01554,COG4653	N/A	N/A	N/A	N/A
KOfam	UHGV-1466044_13	K06904	122.2	5.7e-36	N/A	N/A
PHROG	UHGV-1466044_13	phrog_80	132.5	4.3e-39	head maturation protease	head and packaging
UniRef90	UHGV-1466044_13	UniRef90_A0A1C5W530	271.0	0	Phage prohead protease, HK97 family	N/A
eggNOG-mapper	UHGV-1466044_13	411471.SUBVAR_05851	252.0	0	Caudovirus prohead serine protease	N/A
Pfam	UHGV-1466044_13	PF04586	N/A	N/A	Caudovirus prohead serine protease	Peptidase_S78
COG	UHGV-1466044_13	COG3740	N/A	N/A	Phage head maturation protease	N/A
structural_annotation	UHGV-1466044_13	PF04586,TIGR01543,COG3740	N/A	N/A	N/A	N/A
PHROG	UHGV-1466044_14	phrog_12	115.7	3.1e-34	portal protein	head and packaging
UniRef90	UHGV-1466044_14	UniRef90_UPI00195C5E58	648.0	0	phage portal protein	N/A
eggNOG-mapper	UHGV-1466044_14	742740.HMPREF9474_04306	592.0	0	Phage portal protein	N/A
Pfam	UHGV-1466044_14	PF04860	N/A	N/A	Phage portal protein	Phage_portal
COG	UHGV-1466044_14	COG4695	N/A	N/A	Phage portal protein BeeE	N/A
structural_annotation	UHGV-1466044_14	PF04860,MF_04135,TIGR01537,COG4695	N/A	N/A	N/A	N/A
PHROG	UHGV-1466044_15	phrog_9	333.4	0	terminase large subunit	head and packaging
UniRef90	UHGV-1466044_15	UniRef90_A0A8J6TY49	895.0	0	Terminase large subunit	N/A
eggNOG-mapper	UHGV-1466044_15	411471.SUBVAR_05848	793.0	0	large subunit	N/A
Pfam	UHGV-1466044_15	PF03354	N/A	N/A	Terminase large subunit, ATPase domain	TerL_ATPase
Pfam	UHGV-1466044_15	PF20441	N/A	N/A	Terminase large subunit, endonuclease domain	TerL_nuclease
COG	UHGV-1466044_15	COG4626	N/A	N/A	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	N/A
structural_annotation	UHGV-1466044_15	PF20441,PF03354,MF_04146,TIGR01547,COG4626	N/A	N/A	N/A	N/A
PHROG	UHGV-1466044_16	phrog_1066	88.4	6.6e-26	N/A	unknown function
eggNOG-mapper	UHGV-1466044_16	1094508.Tsac_2428	98.2	5.16e-25	N/A	N/A
structural_annotation	UHGV-1466044_16	PF05119,TIGR01558,COG3747	N/A	N/A	N/A	N/A
PHROG	UHGV-1466044_17	phrog_119	66.9	2.9e-19	HNH endonuclease	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1466044_17	UniRef90_UPI00195B555F	178.0	0	HNH endonuclease	N/A
eggNOG-mapper	UHGV-1466044_17	543734.LCABL_11060	104.0	9.56e-28	HNH endonuclease	N/A
Pfam	UHGV-1466044_17	PF01844	N/A	N/A	HNH endonuclease	HNH
COG	UHGV-1466044_17	COG1403	N/A	N/A	5-methylcytosine-specific restriction endonuclease McrA	N/A
PHROG	UHGV-1466044_18	phrog_36	67.3	2.6e-19	transcriptional regulator	transcription regulation
UniRef90	UHGV-1466044_18	UniRef90_A0A6N8H4L3	160.0	0	Sigma70_r4 domain-containing protein	N/A
Pfam	UHGV-1466044_18	PF04545	N/A	N/A	Sigma-70, region 4	Sigma70_r4
structural_annotation	UHGV-1466044_18	PF04545,TIGR02984	N/A	N/A	N/A	N/A
KOfam	UHGV-1466044_20	K03497	84.2	2.5e-24	parB, spo0J; ParB family transcriptional regulator, chromosome partitioning protein	N/A
PHROG	UHGV-1466044_20	phrog_4715	124.6	2.1e-37	ParB-like partition protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1466044_20	UniRef90_A0A1Q6T350	828.0	0	ParB domain-containing protein	N/A
eggNOG-mapper	UHGV-1466044_20	411471.SUBVAR_05842	380.0	0	ParB-like nuclease domain	N/A
Pfam	UHGV-1466044_20	PF02195	N/A	N/A	ParB/Sulfiredoxin domain	ParBc
COG	UHGV-1466044_20	COG1475	N/A	N/A	Chromosome segregation protein Spo0J, contains ParB-like nuclease domain	N/A
structural_annotation	UHGV-1466044_20	PF02195,MF_02015,TIGR04285,COG1475	N/A	N/A	N/A	N/A
KOfam	UHGV-1466044_21	K03496	226.8	0	parA, soj; chromosome partitioning protein	N/A
PHROG	UHGV-1466044_21	phrog_164	171.1	0	ParA-like partition protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1466044_21	UniRef90_A0A6N8H6J9	407.0	0	ParA family protein	N/A
eggNOG-mapper	UHGV-1466044_21	411471.SUBVAR_05839	310.0	0	AAA domain	N/A
Pfam	UHGV-1466044_21	PF13614	N/A	N/A	AAA domain	AAA_31
COG	UHGV-1466044_21	COG1192	N/A	N/A	ParA-like ATPase involved in chromosome/plasmid partitioning or cellulose biosynthesis protein BcsQ	N/A
structural_annotation	UHGV-1466044_21	PF13614,MF_00533,TIGR03453,COG1192	N/A	N/A	N/A	N/A
KOfam	UHGV-1466044_22	K02314	227.1	0	dnaB; replicative DNA helicase [EC:5.6.2.3]	N/A
PHROG	UHGV-1466044_22	phrog_19	210.4	0	DnaB-like replicative helicase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1466044_22	UniRef90_A0A1Q6T363	823.0	0	DNA helicase	N/A
eggNOG-mapper	UHGV-1466044_22	411471.SUBVAR_05838	424.0	0	Participates in initiation and elongation during chromosome replication	N/A
Pfam	UHGV-1466044_22	PF00772	N/A	N/A	DnaB-like helicase N terminal domain	DnaB
Pfam	UHGV-1466044_22	PF03796	N/A	N/A	DnaB-like helicase C terminal domain	DnaB_C
COG	UHGV-1466044_22	COG0305	N/A	N/A	Replicative DNA helicase	N/A
structural_annotation	UHGV-1466044_22	PF03796,PF00772,MF_04155,TIGR00665,COG0305	N/A	N/A	N/A	N/A
PHROG	UHGV-1466044_23	phrog_678	49.8	0.000000000000066	replication initiation O-like	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1466044_23	UniRef90_A0A6N8H2D2	207.0	0	Helix-turn-helix domain-containing protein	N/A
eggNOG-mapper	UHGV-1466044_23	411471.SUBVAR_05835	132.0	2.65e-35	Helix-turn-helix domain	N/A
COG	UHGV-1466044_23	COG3935	N/A	N/A	DNA replication protein DnaD	N/A
KOfam	UHGV-1466044_24	K03111	130.6	1.8e-38	ssb; single-strand DNA-binding protein	N/A
PHROG	UHGV-1466044_24	phrog_44	139.3	2.20004e-41	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1466044_24	UniRef90_A0A1Q6T3F1	259.0	0	Single-stranded DNA-binding protein	N/A
eggNOG-mapper	UHGV-1466044_24	411471.SUBVAR_04646	182.0	0	Single-stranded DNA-binding protein	N/A
Pfam	UHGV-1466044_24	PF00436	N/A	N/A	Single-strand binding protein family	SSB
NCBIFam	UHGV-1466044_24	TIGR00621.2	N/A	N/A	single-stranded DNA-binding protein	N/A
COG	UHGV-1466044_24	COG0629	N/A	N/A	Single-stranded DNA-binding protein	N/A
HAMAP	UHGV-1466044_24	MF_00984	N/A	N/A	Single-stranded DNA-binding protein	N/A
structural_annotation	UHGV-1466044_24	PF00436,MF_00984,NF005241,COG0629	N/A	N/A	N/A	N/A
PHROG	UHGV-1466044_25	phrog_1029	202.2	0	N/A	unknown function
eggNOG-mapper	UHGV-1466044_25	411471.SUBVAR_05833	238.0	0	N/A	N/A
structural_annotation	UHGV-1466044_25	PF10065,COG5532	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-1466044_26	411471.SUBVAR_05832	97.8	9.29e-26	N/A	N/A

All viral genomes

ID	Representative?	Length (bps)	% GC Content	CheckV Completeness	geNomad Score
UHGV-1466044	Yes	21,213	59	64	1