vOTU vOTU-110806

vOTU: vOTU-110806

Overview

Genome (FASTA) Annotation Track (GFF) Proteins (FASTA) Protein Annotation (TSV)

Cluster properties
vOTU ID	vOTU-110806
Number of genomes	1
Taxonomy (ICTV)
Taxonomy (UHGV)	vFAM-00006 → vSUBFAM-00007 → vOTU-110806
Host lineage	Bacteria → Firmicutes_A → Clostridia → Oscillospirales → Ruminococcaceae → Faecalibacterium
Host range breadth	Genus
Lifestyle	temperate (Evidence: BACPHLIP)

Representative genome
Genome ID	UHGV-0034509
Biosample ID	N/A
Genome length (bp)	45,996 bps
CheckV completeness	79.80% (Medium-quality)
CDS count	90
CDS density	88.64%
tRNA count	0
Integrase	No
Viral confidence	Confident

Host assignment details
Assignment method	CRISPR
CRISPR-predicted host lineage	Bacteria → Firmicutes_A → Clostridia → Oscillospirales → Ruminococcaceae → Faecalibacterium	Total connections	716	Host agreement	97.35
PHIST-predicted host lineage		Total connections		Host agreement

Representative genome content

Select to view: Genome Viewer Functional Annotation

Genome view (completeness: 79.8)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
eggNOG-mapper	UHGV-0034509_2	1298920.KI911353_gene2656	53.1	0.000000439	N/A	N/A
structural_annotation	UHGV-0034509_2	PF19586,TIGR01563,COG5614	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0034509_3	397290.C810_01411	52.4	0.00000547	N/A	N/A
structural_annotation	UHGV-0034509_4	PF06141,TIGR02367,COG3167	N/A	N/A	N/A	N/A
PHROG	UHGV-0034509_5	phrog_158	44.9	0.0000000000019	major tail protein	tail
UniRef90	UHGV-0034509_5	UniRef90_UPI001D087591	113.0	1.42e-29	phage tail protein	N/A
eggNOG-mapper	UHGV-0034509_5	1449343.JQLQ01000002_gene1514	57.4	0.0000000278	Phage tail tube protein, TTP	N/A
structural_annotation	UHGV-0034509_5	PF16463,TIGR02241,COG5437	N/A	N/A	N/A	N/A
Pfam	UHGV-0034509_6	PF16478	N/A	N/A	N/A	DUF5055
structural_annotation	UHGV-0034509_6	PF16478	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0034509_7	1121333.JMLH01000047_gene1011	78.6	5.11e-17	N/A	N/A
PHROG	UHGV-0034509_8	phrog_1535	141.0	0	tail length tape measure protein	tail
UniRef90	UHGV-0034509_8	UniRef90_A0A318EME6	180.0	4.83028e-42	Phage-related protein	N/A
eggNOG-mapper	UHGV-0034509_8	1121866.AUGK01000003_gene1437	196.0	0	phage tail tape measure protein	N/A
COG	UHGV-0034509_8	COG1280	N/A	N/A	Threonine/homoserine/homoserine lactone efflux protein	N/A
PHROG	UHGV-0034509_9	phrog_1194	79.8	2.7e-23	N/A	unknown function
eggNOG-mapper	UHGV-0034509_9	1007103.AFHW01000096_gene3257	52.4	0.000000533	N/A	N/A
Pfam	UHGV-0034509_9	PF20458	N/A	N/A	N/A	DUF6711
structural_annotation	UHGV-0034509_9	PF20458,TIGR02126,COG3499	N/A	N/A	N/A	N/A
PHROG	UHGV-0034509_10	phrog_13879	230.6	0	N/A	unknown function
eggNOG-mapper	UHGV-0034509_10	1122919.KB905559_gene1344	157.0	5.85e-38	N/A	N/A
Pfam	UHGV-0034509_10	PF19789	N/A	N/A	N/A	DUF6273
structural_annotation	UHGV-0034509_10	PF14594,PF19789,PF03256,PF09134,NF033848,COG3500,COG5156	N/A	N/A	N/A	N/A
PHROG	UHGV-0034509_11	phrog_18725	68.8	8e-20	N/A	unknown function
eggNOG-mapper	UHGV-0034509_11	1226322.HMPREF1545_00062	75.9	0.00000000000000345	N/A	N/A
PHROG	UHGV-0034509_12	phrog_9534	50.0	0.00000000000004	head protein	head and packaging
eggNOG-mapper	UHGV-0034509_12	748224.HMPREF9436_01407	206.0	0	COG NOG18825 non supervised orthologous group	N/A
PHROG	UHGV-0034509_14	phrog_1382	50.7	0.000000000000012	N/A	unknown function
eggNOG-mapper	UHGV-0034509_14	33035.JPJF01000043_gene998	46.6	0.00000209	N/A	N/A
KOfam	UHGV-0034509_15	K07273	165.7	0	acm; lysozyme	N/A
PHROG	UHGV-0034509_15	phrog_291	116.3	2.8e-34	endolysin	lysis
UniRef90	UHGV-0034509_15	UniRef90_A0A564U0D3	409.0	0	Autolytic lysozyme	N/A
eggNOG-mapper	UHGV-0034509_15	718252.FP2_04890	244.0	0	hydrolase, family 25	N/A
Pfam	UHGV-0034509_15	PF01183	N/A	N/A	Glycosyl hydrolases family 25	Glyco_hydro_25
COG	UHGV-0034509_15	COG3757	N/A	N/A	Lyzozyme M1 (1,4-beta-N-acetylmuramidase), GH25 family	N/A
structural_annotation	UHGV-0034509_15	PF01183,NF007404,COG3757	N/A	N/A	N/A	N/A
PHROG	UHGV-0034509_17	phrog_15303	115.2	3e-34	N/A	unknown function
Pfam	UHGV-0034509_17	PF09682	N/A	N/A	Bacteriophage holin of superfamily 6 (Holin_LLH)	Phage_holin_6_1
KOfam	UHGV-0034509_18	K24213	55.0	7.8e-16	C1QTNF9; complement C1q and tumor necrosis factor-related protein 9	N/A
PHROG	UHGV-0034509_18	phrog_17587	56.9	1.6e-16	tail fiber protein	tail
UniRef90	UHGV-0034509_18	UniRef90_UPI0018835F0C	620.0	0	collagen-like protein	N/A
eggNOG-mapper	UHGV-0034509_18	411483.FAEPRAA2165_00757	168.0	2.24208e-44	N/A	N/A
Pfam	UHGV-0034509_18	PF01391	N/A	N/A	Collagen triple helix repeat (20 copies)	Collagen
structural_annotation	UHGV-0034509_18	PF10651	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0034509_20	PF07870,MF_01506	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0034509_23	1160721.RBI_I00206	58.5	0.0000000000724	N/A	N/A
Pfam	UHGV-0034509_23	PF09274	N/A	N/A	ParG	ParG
structural_annotation	UHGV-0034509_23	PF10723	N/A	N/A	N/A	N/A
PHROG	UHGV-0034509_27	phrog_16490	102.0	7.7e-39	N/A	unknown function
eggNOG-mapper	UHGV-0034509_27	1408437.JNJN01000043_gene803	159.0	4.2039e-45	N/A	N/A
eggNOG-mapper	UHGV-0034509_28	658655.HMPREF0988_00916	120.0	2.13e-33	N/A	N/A
eggNOG-mapper	UHGV-0034509_29	1408437.JNJN01000043_gene801	86.7	2.85e-18	N/A	N/A
PHROG	UHGV-0034509_32	phrog_10980	52.7	0.0000000000000076	N/A	unknown function
UniRef90	UHGV-0034509_32	UniRef90_G3MA20	73.9	0.000000000000025	Gp279	N/A
structural_annotation	UHGV-0034509_33	PF07878	N/A	N/A	N/A	N/A
KOfam	UHGV-0034509_35	K03496	235.6	0	parA, soj; chromosome partitioning protein	N/A
PHROG	UHGV-0034509_35	phrog_164	161.5	0	ParA-like partition protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0034509_35	UniRef90_A0A1C6BS15	211.0	0	Sporulation initiation inhibitor protein soj	N/A
eggNOG-mapper	UHGV-0034509_35	1408423.JHYA01000021_gene392	192.0	0	Cellulose biosynthesis protein BcsQ	N/A
Pfam	UHGV-0034509_35	PF13614	N/A	N/A	AAA domain	AAA_31
COG	UHGV-0034509_35	COG1192	N/A	N/A	ParA-like ATPase involved in chromosome/plasmid partitioning or cellulose biosynthesis protein BcsQ	N/A
structural_annotation	UHGV-0034509_35	PF13614,MF_00533,NF010443,COG1192	N/A	N/A	N/A	N/A
PHROG	UHGV-0034509_38	phrog_4402	107.8	8.1e-32	replication initiation protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0034509_38	UniRef90_A0A0H5Q331	254.0	0	Rep_3 domain-containing protein	N/A
eggNOG-mapper	UHGV-0034509_38	999413.HMPREF1094_04438	142.0	1.33e-36	Initiator Replication protein	N/A
Pfam	UHGV-0034509_38	PF01051	N/A	N/A	Initiator Replication protein, WH1	Rep3_N
Pfam	UHGV-0034509_38	PF21205	N/A	N/A	Initiator Rep protein, WH2	Rep3_C
COG	UHGV-0034509_38	COG5527	N/A	N/A	Protein involved in initiation of plasmid replication	N/A
structural_annotation	UHGV-0034509_38	PF01051,PF21205,NF010305,COG5527	N/A	N/A	N/A	N/A
UniRef90	UHGV-0034509_39	UniRef90_A0A2A7AM70	196.0	0	HTH cro/C1-type domain-containing protein	N/A
Pfam	UHGV-0034509_39	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
structural_annotation	UHGV-0034509_39	PF13560,MF_00535,NF041951,COG1476	N/A	N/A	N/A	N/A
PHROG	UHGV-0034509_42	phrog_8	52.2	0.000000000000013	transcriptional regulator	transcription regulation
UniRef90	UHGV-0034509_42	UniRef90_A0A1C6D4U5	95.1	5.25e-23	Helix-turn-helix domain	N/A
eggNOG-mapper	UHGV-0034509_42	693746.OBV_43290	54.7	0.0000000779	addiction module antidote protein HigA	N/A
Pfam	UHGV-0034509_42	PF13443	N/A	N/A	Cro/C1-type HTH DNA-binding domain	HTH_26
COG	UHGV-0034509_42	COG3093	N/A	N/A	Plasmid maintenance system antidote protein VapI, contains XRE-type HTH domain	N/A
structural_annotation	UHGV-0034509_42	PF01381,MF_00535,NF041951,COG3655	N/A	N/A	N/A	N/A
PHROG	UHGV-0034509_43	phrog_1468	41.5	0.0000000000044	transcriptional repressor	transcription regulation
UniRef90	UHGV-0034509_43	UniRef90_A0A8J6LUU7	55.8	0.0000000129	XRE family transcriptional regulator	N/A
eggNOG-mapper	UHGV-0034509_43	428125.CLOLEP_02737	47.8	0.00000336	N/A	N/A
structural_annotation	UHGV-0034509_43	TIGR03070	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0034509_44	397290.C810_01459	80.5	6.91e-16	N/A	N/A
structural_annotation	UHGV-0034509_45	TIGR03826	N/A	N/A	N/A	N/A
Pfam	UHGV-0034509_47	PF13443	N/A	N/A	Cro/C1-type HTH DNA-binding domain	HTH_26
structural_annotation	UHGV-0034509_47	PF13443,TIGR02684,COG1476	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0034509_48	PF14143	N/A	N/A	N/A	N/A
KOfam	UHGV-0034509_49	K07738	43.5	0.0000000000048	nrdR; transcriptional repressor NrdR	N/A
UniRef90	UHGV-0034509_49	UniRef90_X1J2I6	52.8	0.000000179	ATP-cone domain-containing protein (Fragment)	N/A
eggNOG-mapper	UHGV-0034509_49	1165096.ARWF01000001_gene689	51.6	0.000000266	Negatively regulates transcription of bacterial ribonucleotide reductase nrd genes and operons by binding to NrdR- boxes	N/A
Pfam	UHGV-0034509_49	PF01096	N/A	N/A	Transcription factor S-II (TFIIS)	TFIIS_C
COG	UHGV-0034509_49	COG1327	N/A	N/A	Transcriptional regulator NrdR, contains Zn-ribbon and ATP-cone domains	N/A
structural_annotation	UHGV-0034509_49	PF04606,NF007241	N/A	N/A	N/A	N/A
Pfam	UHGV-0034509_51	PF13451	N/A	N/A	Probable zinc-ribbon domain	zf-trcl
COG	UHGV-0034509_51	COG4248	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0034509_51	PF13451	N/A	N/A	N/A	N/A
PHROG	UHGV-0034509_52	phrog_155	146.9	1.09301e-43	Erf-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0034509_52	UniRef90_E2ZNS9	273.0	0	Erf family protein	N/A
eggNOG-mapper	UHGV-0034509_52	748224.HMPREF9436_03360	273.0	0	ERF superfamily	N/A
Pfam	UHGV-0034509_52	PF04404	N/A	N/A	ERF superfamily	ERF
structural_annotation	UHGV-0034509_52	PF04404,COG4712	N/A	N/A	N/A	N/A
KOfam	UHGV-0034509_53	K03111	116.7	3.1e-34	ssb; single-strand DNA-binding protein	N/A
PHROG	UHGV-0034509_53	phrog_44	126.5	2e-37	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0034509_53	UniRef90_A0A6N7TNV3	157.0	0	Single-stranded DNA-binding protein	N/A
eggNOG-mapper	UHGV-0034509_53	748224.HMPREF9436_03359	152.0	1.4013e-45	Plays an important role in DNA replication, recombination and repair. Binds to ssDNA and to an array of partner proteins to recruit them to their sites of action during DNA metabolism	N/A
Pfam	UHGV-0034509_53	PF00436	N/A	N/A	Single-strand binding protein family	SSB
NCBIFam	UHGV-0034509_53	TIGR00621.2	N/A	N/A	single-stranded DNA-binding protein	N/A
COG	UHGV-0034509_53	COG0629	N/A	N/A	Single-stranded DNA-binding protein	N/A
HAMAP	UHGV-0034509_53	MF_00984	N/A	N/A	Single-stranded DNA-binding protein	N/A
structural_annotation	UHGV-0034509_53	PF00436,MF_00984,NF005241,COG0629	N/A	N/A	N/A	N/A
PHROG	UHGV-0034509_54	phrog_28936	123.1	1.7e-36	N/A	unknown function
eggNOG-mapper	UHGV-0034509_54	573061.Clocel_3563	129.0	5.17e-35	N/A	N/A
structural_annotation	UHGV-0034509_54	PF11645,MF_01490,NF040854	N/A	N/A	N/A	N/A
PHROG	UHGV-0034509_55	phrog_35094	93.3	3e-27	N/A	unknown function
eggNOG-mapper	UHGV-0034509_55	457424.BFAG_02409	119.0	5.41e-34	N/A	N/A
PHROG	UHGV-0034509_57	phrog_843	62.0	6.6e-18	Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0034509_57	UniRef90_UPI001159D907	116.0	7.86e-30	Holliday junction resolvase RecU	N/A
eggNOG-mapper	UHGV-0034509_57	929506.CbC4_1203	107.0	4.73e-27	Endonuclease that resolves Holliday junction intermediates in genetic recombination. Cleaves mobile four-strand junctions by introducing symmetrical nicks in paired strands. Promotes annealing of linear ssDNA with homologous dsDNA. Required for DNA repair, homologous recombination and chromosome segregation	N/A
structural_annotation	UHGV-0034509_57	PF03838,MF_00130,NF002581,COG3331	N/A	N/A	N/A	N/A
Pfam	UHGV-0034509_60	PF03819	N/A	N/A	MazG nucleotide pyrophosphohydrolase domain	MazG
structural_annotation	UHGV-0034509_60	PF11998,COG5420	N/A	N/A	N/A	N/A
Pfam	UHGV-0034509_65	PF04448	N/A	N/A	N/A	DUF551
PHROG	UHGV-0034509_66	phrog_2118	96.8	2.6e-28	HNH endonuclease	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0034509_66	UniRef90_UPI0012DD5A09	196.0	0	HNH endonuclease	N/A
eggNOG-mapper	UHGV-0034509_66	742740.HMPREF9474_03129	114.0	3.28e-31	HNH endonuclease	N/A
Pfam	UHGV-0034509_66	PF01844	N/A	N/A	HNH endonuclease	HNH
COG	UHGV-0034509_66	COG1403	N/A	N/A	5-methylcytosine-specific restriction endonuclease McrA	N/A
structural_annotation	UHGV-0034509_66	TIGR02646,COG1403	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0034509_67	PF16677	N/A	N/A	N/A	N/A
UniRef90	UHGV-0034509_69	UniRef90_UPI0012DD33A2	306.0	0	restriction endonuclease subunit M	N/A
eggNOG-mapper	UHGV-0034509_69	596329.HMPREF0631_0252	214.0	0	restriction endonuclease	N/A
PADLOC	UHGV-0034509_69	MTase_II_00176	158.9	0	Type II methyltransferase	RM
COG	UHGV-0034509_69	COG1002	N/A	N/A	Type II restriction/modification system, endonuclease and methylase domains	N/A
PHROG	UHGV-0034509_70	phrog_3136	125.9	1.5e-37	N/A	unknown function
UniRef90	UHGV-0034509_70	UniRef90_UPI001CBCD733	139.0	2.23e-38	ASCH domain-containing protein	N/A
eggNOG-mapper	UHGV-0034509_70	394503.Ccel_3165	70.9	0.00000000000027	The globular domain of the protein is located near the polypeptide exit tunnel on the outside of the subunit, while an extended beta-hairpin is found that lines the wall of the exit tunnel in the center of the 70S ribosome	N/A
COG	UHGV-0034509_70	COG4933	N/A	N/A	Predicted transcriptional regulator, contains an HTH and PUA-like domains	N/A
structural_annotation	UHGV-0034509_70	PF08819,MF_00684,NF008917,COG4933	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0034509_77	NF041588	N/A	N/A	N/A	N/A
UniRef90	UHGV-0034509_80	UniRef90_Q5YA82	61.2	0.000000000177	28	N/A
UniRef90	UHGV-0034509_81	UniRef90_UPI001AD832E5	95.1	5.11e-24	Lar family restriction alleviation protein	N/A
Pfam	UHGV-0034509_81	PF14354	N/A	N/A	Restriction alleviation protein Lar	Lar_restr_allev
structural_annotation	UHGV-0034509_81	PF14354	N/A	N/A	N/A	N/A
PHROG	UHGV-0034509_82	phrog_678	43.1	0.000000000007	replication initiation O-like	DNA, RNA and nucleotide metabolism
Pfam	UHGV-0034509_82	PF19808	N/A	N/A	N/A	DUF6291
structural_annotation	UHGV-0034509_82	PF19808	N/A	N/A	N/A	N/A
KOfam	UHGV-0034509_83	K02314	213.3	0	dnaB; replicative DNA helicase [EC:5.6.2.3]	N/A
PHROG	UHGV-0034509_83	phrog_19	224.3	0	DnaB-like replicative helicase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0034509_83	UniRef90_A0A564SBR1	435.0	0	Replicative DNA helicase	N/A
eggNOG-mapper	UHGV-0034509_83	1203606.HMPREF1526_01325	170.0	1.4013e-45	Participates in initiation and elongation during chromosome replication	N/A
Pfam	UHGV-0034509_83	PF03796	N/A	N/A	DnaB-like helicase C terminal domain	DnaB_C
COG	UHGV-0034509_83	COG0305	N/A	N/A	Replicative DNA helicase	N/A
structural_annotation	UHGV-0034509_83	PF03796,PF00772,MF_04155,TIGR00665,COG0305	N/A	N/A	N/A	N/A
PHROG	UHGV-0034509_87	phrog_434	44.0	0.0000000000033	RecE-like recombination exonuclease	DNA, RNA and nucleotide metabolism
eggNOG-mapper	UHGV-0034509_87	1352230.S6C475_9CAUD	49.7	0.00000979	YqaJ-like viral recombinase domain	N/A

All viral genomes

ID	Representative?	Length (bps)	% GC Content	CheckV Completeness	geNomad Score
UHGV-0034509	Yes	45,996	48	80	1